CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS3_RHIEC (Triosephosphate isomerase (Fragment) OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.640e-34
Identity = 81/161 (50.31%), Postives = 106/161 (65.84%), Query Frame = 3
Query:  135 GAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 611
            GA+TGE+SAE+L +  I +V++GHSERR    ES   +  K   AL+ GLKVI CVGE+LEQRE+G    VV  Q   +A  V++  W +IV+AYEP+WAIGTGK A+P  AQ +H ++R+ L   TS    A   I+YGGSV   N  ELAA PD++G L
Sbjct:   68 GAYTGEVSAELLKDSQIEYVLIGHSERREYFAESAAILNAKAQNALNAGLKVIYCVGESLEQRESGQAEVVVLQQICDLASVVTAEQWPHIVIAYEPIWAIGTGKTASPEDAQTMHAKIREGLTQITSH--GANMAILYGGSVKAENAVELAACPDINGAL 226          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_VIBMA (Triosephosphate isomerase OS=Vibrio marinus GN=tpiA PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.366e-34
Identity = 84/190 (44.21%), Postives = 110/190 (57.89%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            + AQN  +   GAFTG++S  ML       +I+GHSERR    ES+EFV  K A+    GL  + C+GE+  Q EAG TM V A Q  A+ +   V +    ++AYEP+WAIGTGK AT   AQ +H ++R  + A  S  +A    I YGGSV   N     AQPD+DG LVGGA+L  + F  I K+A
Sbjct:   63 LGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENGLTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVEALEGAIIAYEPIWAIGTGKAATAEDAQRIHAQIRAHI-AEKSEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAALDAKSFAAIAKAA 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_THET8 (Triosephosphate isomerase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tpiA PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.366e-34
Identity = 83/188 (44.15%), Postives = 112/188 (59.57%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            AQ+    K GA+TGE+SA ML +L   + I+GHSERR    E++  V +K    L +G+  I CVGE LE RE G  +     Q +   + V       +V+AYEPVWAIGTGK ATP  A+ +H  +RK L        A+  RI+YGGSVN  N  +L + P+VDG LVGGASL+ E F+ +++ A
Sbjct:   62 AQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGITPILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATPEDAEAMHQAIRKALSERYGEAFASRVRILYGGSVNPKNFADLLSMPNVDGGLVGGASLELESFLALLRIA 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SILST (Triosephosphate isomerase OS=Silicibacter sp. (strain TM1040) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.366e-34
Identity = 87/184 (47.28%), Postives = 113/184 (61.41%), Query Frame = 3
Query:   93 DFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK-AIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATR---IIYGGSVNGANCKELAAQPDVDGFLVGGASLK 632
            D  +  Q+C  K  GA TG++SA+ML +    +VI+GHSERR    E +  V  K   A + GL  + C+GETLE+REAG+T++VV AQ   ++ D V++  N V+AYEPVWAIGTGKV T  Q  EVH  LR  L A       AA +   ++YGGSV   N  E+    +VDG LVGGASLK
Sbjct:   54 DIAIGGQDCHAKTSGAHTGDLSADMLRDAGATYVIIGHSERRADHGEGDADVRAKTEAAQAAGLVAVVCIGETLEEREAGTTLEVVGAQLAGSLPDGVTA-ENTVVAYEPVWAIGTGKVPTLDQIAEVHDALRADLVA----RFGAAGKDLPLLYGGSVKPGNAAEIFGVSNVDGALVGGASLK 232          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRTD (Triosephosphate isomerase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.620e-34
Identity = 81/191 (42.41%), Postives = 115/191 (60.21%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 656
            VAAQN + +  GAFTGE S ++L  +   +V++GHSERR   +E++E +  K     + G+  I C GE+LE  EAG   + V AQ  A    ++    ++ V+AYEP+WAIGTGK A+   AQ++   +R  + A+   E+A   R++YGGSV   N  E  A PDVDG LVGGASL+PE     +D +K
Sbjct:   62 VAAQNTYFENSGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMIPIICCGESLETYEAGKAAEFVGAQVSAALAGLTPEQVASSVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVLYGGSVKPENVAEYMACPDVDGALVGGASLEPESFLALLDFVK 252          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRT2 (Triosephosphate isomerase OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=tpiA PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 9.620e-34
Identity = 81/191 (42.41%), Postives = 115/191 (60.21%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 656
            VAAQN + +  GAFTGE S ++L  +   +V++GHSERR   +E++E +  K     + G+  I C GE+LE  EAG   + V AQ  A    ++    ++ V+AYEP+WAIGTGK A+   AQ++   +R  + A+   E+A   R++YGGSV   N  E  A PDVDG LVGGASL+PE     +D +K
Sbjct:   62 VAAQNTYFENSGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMIPIICCGESLETYEAGKAAEFVGAQVSAALAGLTPEQVASSVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVLYGGSVKPENVAEYMACPDVDGALVGGASLEPESFLALLDFVK 252          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRT1 (Triosephosphate isomerase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.620e-34
Identity = 81/191 (42.41%), Postives = 115/191 (60.21%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 656
            VAAQN + +  GAFTGE S ++L  +   +V++GHSERR   +E++E +  K     + G+  I C GE+LE  EAG   + V AQ  A    ++    ++ V+AYEP+WAIGTGK A+   AQ++   +R  + A+   E+A   R++YGGSV   N  E  A PDVDG LVGGASL+PE     +D +K
Sbjct:   62 VAAQNTYFENSGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMIPIICCGESLETYEAGKAAEFVGAQVSAALAGLTPEQVASSVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVLYGGSVKPENVAEYMACPDVDGALVGGASLEPESFLALLDFVK 252          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPA (Triosephosphate isomerase OS=Mycobacterium paratuberculosis GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.620e-34
Identity = 84/179 (46.93%), Postives = 108/179 (60.34%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AQ+      GA+TG+IS   L  L   +V++GHSERR   NE +  V  K A AL   L  I C+GE LE REAG+ +     Q +     +S+     +V+AYEPVWAIGTG+VA+   AQEV   +RK L +  S +IA + R++YGGSVN  N  EL AQ D+DG LVGGASL  E
Sbjct:   68 AQDLSQHDSGAYTGDISGAFLAKLGCTFVVVGHSERRTYHNEDDALVAAKAATALKHELTPIICIGEHLEVREAGNHVIHCEEQLRGSLAGLSAEQIGKVVIAYEPVWAIGTGRVASASDAQEVCAAIRKELASLASAQIADSVRVLYGGSVNAKNVGELIAQDDIDGGLVGGASLDGE 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCA1 (Triosephosphate isomerase OS=Mycobacterium avium (strain 104) GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.620e-34
Identity = 84/179 (46.93%), Postives = 108/179 (60.34%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AQ+      GA+TG+IS   L  L   +V++GHSERR   NE +  V  K A AL   L  I C+GE LE REAG+ +     Q +     +S+     +V+AYEPVWAIGTG+VA+   AQEV   +RK L +  S +IA + R++YGGSVN  N  EL AQ D+DG LVGGASL  E
Sbjct:   68 AQDLSQHDSGAYTGDISGAFLAKLGCTFVVVGHSERRTYHNEDDALVAAKAAAALKHELTPIICIGEHLEVREAGNHVIHCEEQLRGSLAGLSAEQIGKVVIAYEPVWAIGTGRVASASDAQEVCAAIRKELASLASAQIADSVRVLYGGSVNAKNVGELIAQDDIDGGLVGGASLDGE 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_FRAP2 (Triosephosphate isomerase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.620e-34
Identity = 80/200 (40.00%), Postives = 119/200 (59.50%), Query Frame = 3
Query:   72 VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            V + L  +  V  QN      GA+TGE+SAEML ++   ++++GHSERR +  E+++ V  K+   +   +  + C+GE+LE R+ G    V+  Q   I + +S    + +++AYEPVWAIGTG VA+  Q QE H  +R  L A     +A   +I+YGGS+   N K++ + PDVDG L+GGASLK  EF +II  A
Sbjct:   49 VLAQLPKEIGVGLQNITFYDNGAYTGELSAEMLHDVGCNYLLIGHSERRSLFGETDQDVFKKLNKIIDTSVVPVVCIGESLEDRQGGRLEKVLTTQLSLILENLSIEQLARVIIAYEPVWAIGTGVVASLEQVQETHQFIRS-LVAKVDENLAKNMKIVYGGSLKAENAKDILSLPDVDGGLIGGASLKASEFNEIINQA 247          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS3_RHIEC5.640e-3450.31Triosephosphate isomerase (Fragment) OS=Rhizobium ... [more]
TPIS_VIBMA7.366e-3444.21Triosephosphate isomerase OS=Vibrio marinus GN=tpi... [more]
TPIS_THET87.366e-3444.15Triosephosphate isomerase OS=Thermus thermophilus ... [more]
TPIS_SILST7.366e-3447.28Triosephosphate isomerase OS=Silicibacter sp. (str... [more]
TPIS_STRTD9.620e-3442.41Triosephosphate isomerase OS=Streptococcus thermop... [more]
TPIS_STRT29.620e-3442.41Triosephosphate isomerase OS=Streptococcus thermop... [more]
TPIS_STRT19.620e-3442.41Triosephosphate isomerase OS=Streptococcus thermop... [more]
TPIS_MYCPA9.620e-3446.93Triosephosphate isomerase OS=Mycobacterium paratub... [more]
TPIS_MYCA19.620e-3446.93Triosephosphate isomerase OS=Mycobacterium avium (... [more]
TPIS_FRAP29.620e-3440.00Triosephosphate isomerase OS=Francisella philomira... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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