CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCA9 (Triosephosphate isomerase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.256e-33
Identity = 81/182 (44.51%), Postives = 107/182 (58.79%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS-----NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AQ+  V   GA+TGE+S   L  L + +V++GHSERR    E +  V  K A AL  GL  I C+GE L+ REAG   D V     ++   ++  S      +V+AYEPVWAIGTG+VA+   AQEV   +R  L    + ++A + R++YGGS N  N  E+ AQ DVDG LVGGASL  E
Sbjct:   68 AQDLSVYDSGAYTGEVSGAFLAKLGVTYVVVGHSERRQYHGEDDALVAAKAAAALKHGLTPIVCIGEALDIREAG---DHVQYNVNSLRGSLAGLSAEQVGKVVIAYEPVWAIGTGRVASAADAQEVCAAIRAELAQIANADVAGSVRVLYGGSANAKNVGEIVAQEDVDGALVGGASLDGE 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPN (Triosephosphate isomerase OS=Chlamydia pneumoniae GN=tpiA PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.256e-33
Identity = 79/187 (42.25%), Postives = 108/187 (57.75%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 659
            + AQN   +  GAFTGEIS  ML  + + +V++GHSERR I  ES+ F+  KV      GL  + CVGE+LE RE G    V+  Q     +++ + S  ++AYEPVWAIGTGKVA     Q++H   R+ +    S   A    I+YGGSV   N +      DVDG LVGGASL+ + F ++ K+
Sbjct:   65 LGAQNVHPELSGAFTGEISLPMLKEVGVEFVLVGHSERRHIFGESDAFIASKVKSVAQAGLVPVLCVGESLEVREEGKAHQVIKKQLLLGLEQMDNGSEFLIAYEPVWAIGTGKVAEASDVQDIHMFCREVVAERFSEATAEEISILYGGSVKVDNAQRFGQCSDVDGLLVGGASLEGQSFFEVAKN 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SACEN (Triosephosphate isomerase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.641e-33
Identity = 86/179 (48.04%), Postives = 106/179 (59.22%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAG-----STMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 629
            AQ+    + GA+TGE+S  ML  L   +V++GHSERR    E++E V  KV   L  G+  I CVGE LE REAG     ST  ++ A      +++     +V+AYEPVWAIGTGKVAT   AQEV   LR  L      EIA   R++YGGSV  +N  EL  Q DVDG LVGGASL
Sbjct:   68 AQDVSEHESGAYTGEVSGPMLAKLGCSYVVVGHSERREHHAETDEVVNRKVRAVLKHGMSPILCVGEPLEVREAGGHVEHSTTQLINALKGLKTEQIRQ---VVVAYEPVWAIGTGKVATAADAQEVCAALRTALADKYGKEIADEVRVLYGGSVKSSNIGELIGQNDVDGALVGGASL 243          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_RALEJ (Triosephosphate isomerase OS=Ralstonia eutropha (strain JMP134) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.641e-33
Identity = 85/179 (47.49%), Postives = 105/179 (58.66%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AQ+   +  GAFTGE++A ML      + ++GHSERR    ES+  V  K   AL  G+  + CVGETL QREAG T  VV  Q +A  D +S      +VLAYEPVWAIGTGK A+  QAQ VH  LR  +       +A    I+YGGSV   N  EL +  D+DG L+GGASLK E
Sbjct:   60 AQDVSAEARGAFTGEVAASMLGEFGCTYALVGHSERRTYHGESDAVVAAKALRALEFGIIPVICVGETLAQREAGETEVVVGRQLQAALDALSVEQLGRVVLAYEPVWAIGTGKTASSEQAQAVHAFLRAEV-RERDAGVADRMAILYGGSVKPDNAAELFSMSDIDGGLIGGASLKSE 237          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PROAC (Triosephosphate isomerase OS=Propionibacterium acnes GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.641e-33
Identity = 82/177 (46.33%), Postives = 106/177 (59.89%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 632
            AQ+      GA+TGE+S  ML  L   +V++GHSERR   NES+E V  K    +  G+  I C GE LE R+AG  ++    Q KA  D + +   + +V+AYEP+WAIGTG+ AT   AQEV   +R+ +        A A RI YGGSV  AN  E+ A+PDVDG LVGGASLK
Sbjct:   70 AQDISAHDDGAYTGEVSGAMLSKLGCRYVVVGHSERREYHNESDELVNAKAKKVIENGMTPIICCGEALEVRKAGKHVEHTVGQIKADLDGIPAEQVAKLVIAYEPIWAIGTGETATADDAQEVCQAIREAVKELYDAPTAEAVRIQYGGSVKPANVAEIMAKPDVDGALVGGASLK 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BIFAA (Triosephosphate isomerase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.641e-33
Identity = 76/177 (42.94%), Postives = 107/177 (60.45%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 632
            AQ   V   GAFTG++SA+M+ +L   +VI+GHSERR    E +  + D+V   L+ G++ I CVGE+ E+R  G  +D    Q   +   +S    + +++AYEPVWAIGTG VATP  AQ+    +R  L       +    RI+YGGSV+  N  EL  +PDVDGFL+GG++LK
Sbjct:   72 AQAVSVTSQGAFTGDVSADMIAHLGCSYVIVGHSERRKYHPEDDANIVDQVRAVLAAGMQPILCVGESYEERRKGIELDFAVGQVHDVTRDLSDEEAAKLIVAYEPVWAIGTGMVATPQSAQDAARAIRNDLSDTFGTRVGETVRILYGGSVSSKNAVELINEPDVDGFLIGGSALK 248          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRGC (Triosephosphate isomerase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.143e-33
Identity = 83/194 (42.78%), Postives = 115/194 (59.28%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 656
            VAAQNC+ +  GAFTGE S ++L  +   +V++GHSERR   +E++E +  K     + G+  I C GE+LE  EAG   + V AQ  A      A++V+S    V+AYEP+WAIGTGK A+   AQ++   +R  + A+   E+A   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:   62 VAAQNCYFENSGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVAS---TVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRA5 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype V GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.143e-33
Identity = 81/194 (41.75%), Postives = 114/194 (58.76%), Query Frame = 3
Query:   93 DFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 656
            +  +AAQN + +  GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + GL  I C GE+LE  EAG  ++ V AQ  A    +S    S++V+AYEP+WAIGTGK AT   AQ +   +R  + A+    +A   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:   59 ELKIAAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRA3 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype III GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.143e-33
Identity = 81/194 (41.75%), Postives = 114/194 (58.76%), Query Frame = 3
Query:   93 DFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 656
            +  +AAQN + +  GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + GL  I C GE+LE  EAG  ++ V AQ  A    +S    S++V+AYEP+WAIGTGK AT   AQ +   +R  + A+    +A   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:   59 ELKIAAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRA1 (Triosephosphate isomerase OS=Streptococcus agalactiae serotype Ia GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.143e-33
Identity = 81/194 (41.75%), Postives = 114/194 (58.76%), Query Frame = 3
Query:   93 DFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 656
            +  +AAQN + +  GAFTGE S ++L  +   +V++GHSERR   +E+++ +  K     + GL  I C GE+LE  EAG  ++ V AQ  A    +S    S++V+AYEP+WAIGTGK AT   AQ +   +R  + A+    +A   R+ YGGSV   N  E  A PDVDG LVGGASL+ E     +D +K
Sbjct:   59 ELKIAAQNSYFENSGAFTGENSPKVLAEMGTDYVVIGHSERRDYFHETDQDINKKAKAIFANGLTPIICCGESLETYEAGKAVEFVGAQVSAALAGLSEEQVSSLVIAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQAVADKVRVQYGGSVKPENVAEYMACPDVDGALVGGASLEAESFLALLDFVK 252          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MYCA91.256e-3344.51Triosephosphate isomerase OS=Mycobacterium abscess... [more]
TPIS_CHLPN1.256e-3342.25Triosephosphate isomerase OS=Chlamydia pneumoniae ... [more]
TPIS_SACEN1.641e-3348.04Triosephosphate isomerase OS=Saccharopolyspora ery... [more]
TPIS_RALEJ1.641e-3347.49Triosephosphate isomerase OS=Ralstonia eutropha (s... [more]
TPIS_PROAC1.641e-3346.33Triosephosphate isomerase OS=Propionibacterium acn... [more]
TPIS_BIFAA1.641e-3342.94Triosephosphate isomerase OS=Bifidobacterium adole... [more]
TPIS_STRGC2.143e-3342.78Triosephosphate isomerase OS=Streptococcus gordoni... [more]
TPIS_STRA52.143e-3341.75Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_STRA32.143e-3341.75Triosephosphate isomerase OS=Streptococcus agalact... [more]
TPIS_STRA12.143e-3341.75Triosephosphate isomerase OS=Streptococcus agalact... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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