CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_DEHSC (Triosephosphate isomerase OS=Dehalococcoides sp. (strain CBDB1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.143e-33
Identity = 84/188 (44.68%), Postives = 112/188 (59.57%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            + AQN + ++ GA+TGEIS  ML  L   +VI+GHSERR    E+ + V  K+  AL  GL  I CVGE  E+ E G T  V+  Q K   D ++  S I++AYEP+WAIGTGK AT  +A      +R+ L        A  + I+YGGSVN  N  E+ +Q ++DG LVGGASLK E F+ I + A
Sbjct:   61 LGAQNLFYQEKGAYTGEISPLMLKEL-CQYVIIGHSERRAYFGETGQVVNQKIKAALQAGLLPIVCVGEKPEENENGQTRQVLETQLKEALDGLNL-SCIIIAYEPIWAIGTGKAATASEANSAIGYIRRVLGDTLGNAAAQTSPILYGGSVNEKNITEILSQTNIDGALVGGASLKAESFVSICRQA 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_DEHSB (Triosephosphate isomerase OS=Dehalococcoides sp. (strain BAV1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.143e-33
Identity = 84/188 (44.68%), Postives = 112/188 (59.57%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            + AQN + ++ GA+TGEIS  ML  L   +VI+GHSERR    E+ + V  K+  AL  GL  I CVGE  E+ E G T  V+  Q K   D ++  S I++AYEP+WAIGTGK AT  +A      +R+ L        A  + I+YGGSVN  N  E+ +Q ++DG LVGGASLK E F+ I + A
Sbjct:   61 LGAQNLFYQEKGAYTGEISPLMLKEL-CQYVIIGHSERRAYFGETGQVVNQKIKAALQAGLLPIVCVGEKPEENENGQTRQVLETQLKEALDGLNL-SCIIIAYEPIWAIGTGKAATASEANSAIGYIRRVLGDTLGNAAAQTSPILYGGSVNEKNITEILSQTNIDGALVGGASLKAESFVSICRQA 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_TREDE (Triosephosphate isomerase OS=Treponema denticola GN=tpiA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.656e-33
Identity = 81/181 (44.75%), Postives = 108/181 (59.67%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            + AQN  +++ GA TGE+S   L+++ +  VILGHSERR I  E+++ +  KV  AL  GL+VI CVGE LE+REAG    V   Q K     VS+     + +AYEPVWAIGTGK A+P  A  +H  +RK L A    + A    I YGGS+   N   L  + ++DG L+GGA LK E
Sbjct:   60 LGAQNMGLEEKGAHTGEVSVLQLLDVGVQAVILGHSERRHIYKETDDLINKKVKLALKHGLEVILCVGELLEEREAGHAEAVCERQIKKGLAEVSAKDLDKVTIAYEPVWAIGTGKNASPEDADAIHSSIRKTLAALYGEKAAKNMIIQYGGSMKPENAAGLLKKHNIDGGLIGGAGLKTE 240          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PHYAS (Triosephosphate isomerase OS=Phytoplasma australiense GN=tpiA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.656e-33
Identity = 77/194 (39.69%), Postives = 123/194 (63.40%), Query Frame = 3
Query:   90 PDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            P+  + AQN + +  GAFTGEIS   LV+L + +V+LGHSERR++  E+++ V  K+  AL   L  + C+GETLE +E   T + +  Q T+A+ D        I++AYEPVWAIGTGK A+P +A +   ++R+ +    S ++  + +I+YGGSV+  N + +  Q ++DG LVG ASL+  +F++  ++A
Sbjct:   60 PNLKIGAQNAFHESEGAFTGEISPLNLVSLGVKYVLLGHSERRVLFGETDQLVNLKLLKALQNNLSPVLCLGETLETKENNKTKEFLEKQLTQALKDVPQEDLEKILIAYEPVWAIGTGKTASPQEANQTIKQIREKVTNLYSAQVVQSLKILYGGSVSSNNVEAILEQNEIDGVLVGKASLETKDFLNFTQAA 253          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_GRABC (Triosephosphate isomerase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.656e-33
Identity = 86/189 (45.50%), Postives = 111/189 (58.73%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK-AIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 665
            V AQ+C + + GA TG++SAEMLV     WVILGHSERR    E +E V +KV  A   GL  I CVGET ++R +G   ++V  Q K ++ D  ++ SN V+AYEPVWAIGTG+ AT      +H  +R+ L      E     RI+YGGSV   N   L   P+V G LVGGASL  +  D +  AE
Sbjct:   61 VGAQDCHMARSGAHTGDLSAEMLVEAGAHWVILGHSERRRDHGELSETVREKVIAARQFGLTPIVCVGETEDERASGRETEIVGWQIKGSLPDGFAADSNGVIAYEPVWAIGTGRTATVEDVAMMHAFIREELVRQFG-EAGRGVRILYGGSVKPENAASLLRVPEVGGALVGGASLSAQ--DFLAIAE 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCLE (Triosephosphate isomerase OS=Mycobacterium leprae GN=tpiA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.774e-33
Identity = 78/167 (46.71%), Postives = 101/167 (60.48%), Query Frame = 3
Query:  135 GAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 629
            GA+TG+IS   L  L   +V++GHSERR   +E +  V  K A AL   L  I C+GE LE RE G  +     Q +     +S     N+V+ YEPVWAIGTG+VA+   AQEV   +RK L A  SP++A   R++YGGS+N  N  ++ AQ DVDG LVGGASL
Sbjct:   77 GAYTGDISGAFLAKLGCSFVLVGHSERRTYHDEGDALVAAKTAAALKNSLTPIVCIGEYLEIREVGEHVSHCQNQLRGSLAGLSPEQIGNVVIVYEPVWAIGTGRVASAADAQEVCEAIRKELGALASPQVAETVRVLYGGSLNAKNIGDIVAQQDVDGGLVGGASL 243          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGI (Triosephosphate isomerase OS=Mycobacterium gilvum (strain PYR-GCK) GN=tpiA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.774e-33
Identity = 81/179 (45.25%), Postives = 105/179 (58.66%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AQ+      GA+TGEIS   L  L   + ++GHSERR    E++E V  K   AL  GL  I C+GE LE REAG+ ++      +     +S+   +  V+AYEPVWAIGTG+VA+   AQEV   +R  L    S ++AA  R++YGGSVN  N  E+  Q DVDG LVGGASL  E
Sbjct:   68 AQDVSQHDSGAYTGEISGAFLAKLGCTFAVVGHSERRTYHGETDELVAAKATAALKHGLTPIVCIGEQLEVREAGNHVEFNVNSLRGSLAGLSAEQIAQTVIAYEPVWAIGTGRVASAADAQEVCKAIRDELGNLASADVAAGVRVLYGGSVNAKNVGEIVGQGDVDGALVGGASLDGE 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRR6 (Triosephosphate isomerase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.235e-33
Identity = 82/194 (42.27%), Postives = 115/194 (59.28%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 656
            VAAQNC+ +  GAFTGE S ++L  +   +V++GHSERR   +E++E +  K     + G+  I C GE+LE  EAG   + V AQ  A      A++V++    V+AYEP+WAIGTGK A+   AQ++   +R  + A+   E+A   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:   62 VAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVAA---SVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRPN (Triosephosphate isomerase OS=Streptococcus pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.235e-33
Identity = 82/194 (42.27%), Postives = 115/194 (59.28%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 656
            VAAQNC+ +  GAFTGE S ++L  +   +V++GHSERR   +E++E +  K     + G+  I C GE+LE  EAG   + V AQ  A      A++V++    V+AYEP+WAIGTGK A+   AQ++   +R  + A+   E+A   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:   62 VAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVAA---SVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRPI (Triosephosphate isomerase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.235e-33
Identity = 82/194 (42.27%), Postives = 115/194 (59.28%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 656
            VAAQNC+ +  GAFTGE S ++L  +   +V++GHSERR   +E++E +  K     + G+  I C GE+LE  EAG   + V AQ  A      A++V++    V+AYEP+WAIGTGK A+   AQ++   +R  + A+   E+A   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:   62 VAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVAA---SVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_DEHSC2.143e-3344.68Triosephosphate isomerase OS=Dehalococcoides sp. (... [more]
TPIS_DEHSB2.143e-3344.68Triosephosphate isomerase OS=Dehalococcoides sp. (... [more]
TPIS_TREDE3.656e-3344.75Triosephosphate isomerase OS=Treponema denticola G... [more]
TPIS_PHYAS3.656e-3339.69Triosephosphate isomerase OS=Phytoplasma australie... [more]
TPIS_GRABC3.656e-3345.50Triosephosphate isomerase OS=Granulibacter bethesd... [more]
TPIS_MYCLE4.774e-3346.71Triosephosphate isomerase OS=Mycobacterium leprae ... [more]
TPIS_MYCGI4.774e-3345.25Triosephosphate isomerase OS=Mycobacterium gilvum ... [more]
TPIS_STRR66.235e-3342.27Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRPN6.235e-3342.27Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRPI6.235e-3342.27Triosephosphate isomerase OS=Streptococcus pneumon... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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