CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRP4 (Triosephosphate isomerase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.235e-33
Identity = 82/194 (42.27%), Postives = 115/194 (59.28%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 656
            VAAQNC+ +  GAFTGE S ++L  +   +V++GHSERR   +E++E +  K     + G+  I C GE+LE  EAG   + V AQ  A      A++V++    V+AYEP+WAIGTGK A+   AQ++   +R  + A+   E+A   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:   62 VAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVAA---SVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRP2 (Triosephosphate isomerase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.235e-33
Identity = 82/194 (42.27%), Postives = 115/194 (59.28%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 656
            VAAQNC+ +  GAFTGE S ++L  +   +V++GHSERR   +E++E +  K     + G+  I C GE+LE  EAG   + V AQ  A      A++V++    V+AYEP+WAIGTGK A+   AQ++   +R  + A+   E+A   R+ YGGSV   N     A PDVDG LVGGASL+ E     +D +K
Sbjct:   62 VAAQNCYFENAGAFTGETSPQVLKEIGTDYVVIGHSERRDYFHETDEDINKKAKAIFANGMLPIICCGESLETYEAGKAAEFVGAQVSAALAGLTAEQVAA---SVIAYEPIWAIGTGKSASQDDAQKMCKVVRDVVAADFGQEVADKVRVQYGGSVKPENVASYMACPDVDGALVGGASLEAESFLALLDFVK 252          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSS (Triosephosphate isomerase OS=Mycobacterium sp. (strain MCS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.235e-33
Identity = 81/179 (45.25%), Postives = 106/179 (59.22%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AQ+      GA+TGEIS   L  L   + ++GHSERR   +E +  V  K A A   G+  I C+GE L+ REAG+ ++    Q +     ++S      V+AYEPVWAIGTG+VA    AQEV   +R  L   +SP++AA  R++YGGSVN  N  E+ AQ DVDG LVGGASL  E
Sbjct:   68 AQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDVDGALVGGASLDGE 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSK (Triosephosphate isomerase OS=Mycobacterium sp. (strain KMS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.235e-33
Identity = 81/179 (45.25%), Postives = 106/179 (59.22%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AQ+      GA+TGEIS   L  L   + ++GHSERR   +E +  V  K A A   G+  I C+GE L+ REAG+ ++    Q +     ++S      V+AYEPVWAIGTG+VA    AQEV   +R  L   +SP++AA  R++YGGSVN  N  E+ AQ DVDG LVGGASL  E
Sbjct:   68 AQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDVDGALVGGASLDGE 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSJ (Triosephosphate isomerase OS=Mycobacterium sp. (strain JLS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.235e-33
Identity = 81/179 (45.25%), Postives = 106/179 (59.22%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AQ+      GA+TGEIS   L  L   + ++GHSERR   +E +  V  K A A   G+  I C+GE L+ REAG+ ++    Q +     ++S      V+AYEPVWAIGTG+VA    AQEV   +R  L   +SP++AA  R++YGGSVN  N  E+ AQ DVDG LVGGASL  E
Sbjct:   68 AQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDVDGALVGGASLDGE 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CLOB1 (Triosephosphate isomerase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.235e-33
Identity = 82/181 (45.30%), Postives = 105/181 (58.01%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            V AQN   ++ GA+TGEI+ +ML  L + +VI+GHSERR   NE++E V  KV  A    L  I C GE+LE+RE   T  V+  Q K     +S      +V+AYEP+WAIGTGK AT  QA E    +R  + A     +A   RI YGGSV     K   A+ ++DG LVGGASLK E
Sbjct:   60 VGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKAMYGESVADKIRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLKAE 240          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CHRVO (Triosephosphate isomerase OS=Chromobacterium violaceum GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.235e-33
Identity = 77/176 (43.75%), Postives = 106/176 (60.23%), Query Frame = 3
Query:  135 GAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 662
            GAFTGE+SA ML ++   + ++GHSERR    E N  +  K+  A++ G+  + CVGETL QREAG  ++VV  Q   ++D        V+AYEPVWAIGTGKVA+  Q  E+H  ++ W   N     +A  R++YGGSV   N + + A  +VDG LVGGASL  +   +I  A
Sbjct:   72 GAFTGEVSAAMLADVGCRYALVGHSERRQYFREDNAALLAKMRNAIAAGVTPVLCVGETLAQREAGDYLNVVREQLAILSDIAD--GEYVVAYEPVWAIGTGKVASLEQIAEIHAFIKNWCLQNAGG--SAKIRVLYGGSVKAENAEAILATENVDGALVGGASLDADSFRVICQA 243          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS1_RHIME (Triosephosphate isomerase 1 OS=Rhizobium meliloti GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.144e-33
Identity = 82/189 (43.39%), Postives = 110/189 (58.20%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 665
            + AQ+C  K+ GA TGE+SAEM+ +     VI+GHSERR    E +  V  K   A    L  I CVGET E+R+AG T+D++  Q        ++  N V+AYEPVWAIGTG   T    +E H  +R+ L +    E     RI+YGGSV  +N KEL    +VDG L+GGASLK  +F+ I ++ E
Sbjct:   65 IGAQDCHQKQSGAHTGEVSAEMVADCFGTHVIVGHSERRTDHGEGDALVRAKTEAAHGADLVAIVCVGETEEERKAGRTLDILKRQLSESLPDQATAENTVIAYEPVWAIGTGLTPTVSDVEEAHAFMRRELVSRFGAE-GGKMRILYGGSVKPSNAKELMGVANVDGALIGGASLKADDFLAIYRAYE 252          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJB (Triosephosphate isomerase OS=Synechococcus sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.064e-32
Identity = 85/196 (43.37%), Postives = 110/196 (56.12%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 653
            + + S   D  V AQN   +  GAFTGEIS  ML  L + +VI+GHSERR    E++E V  ++A A   GL  I CVGE+ +QRE G T   +  Q       +    N+V+AYEP+WAIGTG+     +A  V   +R+ L     P       I+YGGSV   N  EL AQP++DG LVGGASL P EF  I+
Sbjct:   55 VAEQSRGSDIAVGAQNLHWEDQGAFTGEISGPMLAELGVRYVIVGHSERRQYFGETDETVNRRLAAAQRHGLTPILCVGESQQQREQGLTESWIVGQLDRALQGI-DLENLVIAYEPIWAIGTGQTCAAQEANRVIGLIRQHLGNAQLP-------ILYGGSVKAGNIDELMAQPEIDGVLVGGASLDPQEFARIV 242          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_STRAW (Triosephosphate isomerase OS=Streptomyces avermitilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.064e-32
Identity = 87/186 (46.77%), Postives = 107/186 (57.53%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIK 656
            AQ+      GA+TGEIS  ML  L   +V +GHSERR   +E++E V  KV  +   GL  I CVGE LE REAG+ +     Q +     V +     IV+AYEPVWAIGTGKV     AQEV   +R  L    S E+A   RI YGGSV   N  E+ A+PD+DG LVGGASL   EF+ I +
Sbjct:   69 AQDVSAHDSGAYTGEISGSMLAKLKCTYVAVGHSERRQYHHETDEIVNAKVKASFRHGLIPILCVGEELEVREAGNHVTHTLTQVEGGLKDVPAEQAETIVIAYEPVWAIGTGKVCGADDAQEVCAAIRAKLAELYSQELADQVRIQYGGSVKSGNVAEIMAKPDIDGALVGGASLDADEFVKIAR 254          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_STRP46.235e-3342.27Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_STRP26.235e-3342.27Triosephosphate isomerase OS=Streptococcus pneumon... [more]
TPIS_MYCSS6.235e-3345.25Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_MYCSK6.235e-3345.25Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_MYCSJ6.235e-3345.25Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_CLOB16.235e-3345.30Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_CHRVO6.235e-3343.75Triosephosphate isomerase OS=Chromobacterium viola... [more]
TPIS1_RHIME8.144e-3343.39Triosephosphate isomerase 1 OS=Rhizobium meliloti ... [more]
TPIS_SYNJB1.064e-3243.37Triosephosphate isomerase OS=Synechococcus sp. GN=... [more]
TPIS_STRAW1.064e-3246.77Triosephosphate isomerase OS=Streptomyces avermiti... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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