CX295729

Overview
NameCX295729
Unique NameCX295729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295729 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 52/130 (40.00%), Postives = 74/130 (56.92%), Query Frame = 1
Query:  319 GTQVAVKTLGEEVFTDEDKVKAFIDELALLQKIRHPNVVQFLGAVTQSTPMMIVTEYLPKGDLRAYL----KQKGALKPTLAVKFALDIARGMNYLHENRPEAIIHRDLEPSNILRDDSGHLKVADFGLS 696
            G QVAVK   +      D   +FI+E+ LL +IRH N+V F G   +    ++V EYL  G L  +L     ++ +L     +K A+D A+G++YLH      IIHRD++ SNIL D   + KV+DFGLS
Sbjct:  628 GKQVAVKVRFDRTQLGAD---SFINEVHLLSQIRHQNLVSFEGFCYEPKRQILVYEYLSGGSLADHLYGPRSKRHSLNWVSRLKVAVDAAKGLDYLHNGSEPRIIHRDVKSSNILLDKDMNAKVSDFGLS 754          
BLAST of CX295729 vs. ExPASy Swiss-Prot
Match: GEFX_DICDI (RasGEF domain-containing serine/threonine-protein kinase X OS=Dictyostelium discoideum GN=gefX PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.046e-16
Identity = 53/156 (33.97%), Postives = 88/156 (56.41%), Query Frame = 1
Query:  238 YEIDPKELDFSNSVEITKGTFRIA---SWRGTQVAVKTLGEEVFTDEDKVKAFIDELALLQKIRHPNVVQFLGAVTQSTPMMIVTEYLPKGDLRAYLKQKGALKPTLAVKFALDIARGMNYLHENRPEAIIHRDLEPSNILRDDSGHLKVADFGLS 696
            ++I  + L+F+   +I KG+F       + G  VA+K +  E   D + +K    E+++LQ +RHP +V F G    S+ + IVTE++  GD+R  LK+   +     V  A+D+A+ M +LH  +   IIHRDL+  NIL D+   +++ DFG +
Sbjct:   14 WDIPFESLEFNE--KIGKGSFGSVFRGCYLGLDVAIKKI--EKADDPEYLKYIDREVSMLQSLRHPFIVNFSGICVHSSGLYIVTEFVSGGDVRQLLKKTPPIGWDKRVSIAVDLAKAMVFLHAKK---IIHRDLKSKNILLDEFQRIRLCDFGFA 162          
BLAST of CX295729 vs. ExPASy Swiss-Prot
Match: SRK4_SPOLA (Tyrosine-protein kinase isoform SRK4 OS=Spongilla lacustris GN=SRK1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 62/173 (35.84%), Postives = 92/173 (53.18%), Query Frame = 1
Query:  187 KPSTAPMHVQNAREVPEYEIDPKELDFSNSVEITK-GTFRIASWRGT-QVAVKTLGEEVFTDEDKVKAFIDELALLQKIRHPNVVQFLGAVTQSTPMMIVTEYLPKGDLRAYLKQKG-ALKPTLAVKFALDIARGMNYLHENRPEAIIHRDLEPSNILRDDSGHLKVADFGLS 696
            KP TA +  Q A E  E+EI+ K++     +   + G      W GT  VAVKTL     + E+    F++E ++++++RHP ++Q     T+  P+ IVTE +  G L  YL+  G +LK    V     +A GM+YL +   +  IHRDL   NIL  +    KVADFGL+
Sbjct:  219 KPQTAGLSKQ-ANE--EWEIEKKQIKLLRGLGAGQFGEVWEGLWNGTTSVAVKTLKPGTMSIEE----FLEEASIMKQLRHPKLIQLYAVCTKEEPIYIVTELMKHGSLLEYLRGDGRSLKLPDLVDMCSQVASGMSYLEQ---QNYIHRDLAARNILVGEHKICKVADFGLA 381          
BLAST of CX295729 vs. ExPASy Swiss-Prot
Match: RIPK1_HUMAN (Receptor-interacting serine/threonine-protein kinase 1 OS=Homo sapiens GN=RIPK1 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 49/156 (31.41%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  244 IDPKELDFSNSVEITKGTFRIASWRGTQVAVKTLGEEVFTDEDKVK---AFIDELALLQKIRHPNVVQFLGAVTQSTPMMIVTEYLPKGDLRAYLKQKGALKPTLAVKFALDIARGMNYLHENRPEAIIHRDLEPSNILRDDSGHLKVADFGLSSY 702
            I  K  DF  S E+  G F   S    +     + + V+   + ++   A ++E  ++ ++RH  VV+ LG + +     +V EY+ KG+L   LK + +   ++  +  L+I  GM YLH    + +IH+DL+P NIL D+  H+K+AD GL+S+
Sbjct:   10 IKMKSSDFLESAELDSGGFGKVSLCFHRTQGLMIMKTVYKGPNCIEHNEALLEEAKMMNRLRHSRVVKLLGVIIEEGKYSLVMEYMEKGNLMHVLKAEMSTPLSVKGRIILEIIEGMCYLH---GKGVIHKDLKPENILVDNDFHIKIADLGLASF 162          
BLAST of CX295729 vs. ExPASy Swiss-Prot
Match: NUAK2_RAT (NUAK family SNF1-like kinase 2 OS=Rattus norvegicus GN=Nuak2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 43/127 (33.86%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  319 GTQVAVKTLGEEVFTDEDKVKAFIDELALLQKIRHPNVVQFLGAVTQSTPMMIVTEYLPKGDLRAYLKQKGALKPTLAVKFALDIARGMNYLHENRPEAIIHRDLEPSNILRDDSGHLKVADFGLSS 699
            G  VA+K++ ++   DE  +     E+ ++  + HP+++        S+ ++IV EY  +GDL  Y+ ++  L    A  F   I   ++Y H+N    I+HRDL+  NIL D SG++K+ADFGLS+
Sbjct:   79 GRLVAIKSIRKDKIKDEQDLLHIRREIEIMSSLNHPHIIAIHEVFENSSKIVIVMEYASRGDLYDYISERPRLNERDARHFFRQIVSALHYCHQN---GIVHRDLKLENILLDASGNIKIADFGLSN 202          
BLAST of CX295729 vs. ExPASy Swiss-Prot
Match: M3K13_PONAB (Mitogen-activated protein kinase kinase kinase 13 OS=Pongo abelii GN=MAP3K13 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 56/161 (34.78%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  214 QNAREVPEYEIDPKELDFSNSVEITKGTFRIASWRGTQVAVKTLGEEVFTDEDKVKAFIDELALLQKIRHPNVVQFLGAVTQSTPMMIVTEYLPKGDLRAYLKQKGALKPTLAVKFALDIARGMNYLHENRPEAIIHRDLEPSNILRDDSGHLKVADFGLS 696
            Q+  EVP  EI   EL +  S    +G   +  +R  +VA+K + E+  TD          +  L+K++HPN++ F G  TQ+    I+ EY   G L   L+    + P L V ++  IA GMNYLH ++   IIHRDL+  N+L   +  +K++DFG S
Sbjct:  158 QDTWEVPFEEIS--ELQWLGSG--AQGAVFLGKFRAEEVAIKKVREQNETD----------IKHLRKLKHPNIIAFKGVCTQAPCYCIIMEYCAHGQLYEVLRAGRKITPRLLVDWSTGIASGMNYLHLHK---IIHRDLKSPNVLVTHTDAVKISDFGTS 301          
BLAST of CX295729 vs. ExPASy Swiss-Prot
Match: M3K13_MOUSE (Mitogen-activated protein kinase kinase kinase 13 OS=Mus musculus GN=Map3k13 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 56/161 (34.78%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  214 QNAREVPEYEIDPKELDFSNSVEITKGTFRIASWRGTQVAVKTLGEEVFTDEDKVKAFIDELALLQKIRHPNVVQFLGAVTQSTPMMIVTEYLPKGDLRAYLKQKGALKPTLAVKFALDIARGMNYLHENRPEAIIHRDLEPSNILRDDSGHLKVADFGLS 696
            Q+  EVP  EI   EL +  S    +G   +  +R  +VA+K + E+  TD          +  L+K++HPN++ F G  TQ+    I+ EY   G L   L+    + P L V ++  IA GMNYLH ++   IIHRDL+  N+L   +  +K++DFG S
Sbjct:  157 QDTWEVPFEEIS--ELQWLGSG--AQGAVFLGKFRAEEVAIKKVREQNETD----------IKHLRKLKHPNIIAFKGVCTQAPCYCIIMEYCAHGQLYEVLRAGRKITPRLLVDWSTGIASGMNYLHLHK---IIHRDLKSPNVLVTHTDAVKISDFGTS 300          
BLAST of CX295729 vs. ExPASy Swiss-Prot
Match: M3K13_HUMAN (Mitogen-activated protein kinase kinase kinase 13 OS=Homo sapiens GN=MAP3K13 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 56/161 (34.78%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  214 QNAREVPEYEIDPKELDFSNSVEITKGTFRIASWRGTQVAVKTLGEEVFTDEDKVKAFIDELALLQKIRHPNVVQFLGAVTQSTPMMIVTEYLPKGDLRAYLKQKGALKPTLAVKFALDIARGMNYLHENRPEAIIHRDLEPSNILRDDSGHLKVADFGLS 696
            Q+  EVP  EI   EL +  S    +G   +  +R  +VA+K + E+  TD          +  L+K++HPN++ F G  TQ+    I+ EY   G L   L+    + P L V ++  IA GMNYLH ++   IIHRDL+  N+L   +  +K++DFG S
Sbjct:  158 QDTWEVPFEEIS--ELQWLGSG--AQGAVFLGKFRAEEVAIKKVREQNETD----------IKHLRKLKHPNIIAFKGVCTQAPCYCIIMEYCAHGQLYEVLRAGRKITPRLLVDWSTGIASGMNYLHLHK---IIHRDLKSPNVLVTHTDAVKISDFGTS 301          
BLAST of CX295729 vs. ExPASy Swiss-Prot
Match: M3K13_BOVIN (Mitogen-activated protein kinase kinase kinase 13 OS=Bos taurus GN=MAP3K13 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 56/161 (34.78%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  214 QNAREVPEYEIDPKELDFSNSVEITKGTFRIASWRGTQVAVKTLGEEVFTDEDKVKAFIDELALLQKIRHPNVVQFLGAVTQSTPMMIVTEYLPKGDLRAYLKQKGALKPTLAVKFALDIARGMNYLHENRPEAIIHRDLEPSNILRDDSGHLKVADFGLS 696
            Q+  EVP  EI   EL +  S    +G   +  +R  +VA+K + E+  TD          +  L+K++HPN++ F G  TQ+    I+ EY   G L   L+    + P L V ++  IA GMNYLH ++   IIHRDL+  N+L   +  +K++DFG S
Sbjct:  158 QDTWEVPFEEIS--ELQWLGSG--AQGAVFLGKFRAEEVAIKKVREQNETD----------IKHLRKLKHPNIIAFKGVCTQAPCYCIIMEYCAHGQLYEVLRAGRKITPRLLVDWSTGIASGMNYLHLHK---IIHRDLKSPNVLVTHTDAVKISDFGTS 301          
BLAST of CX295729 vs. ExPASy Swiss-Prot
Match: EPHB2_MOUSE (Ephrin type-B receptor 2 OS=Mus musculus GN=Ephb2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 51/142 (35.92%), Postives = 81/142 (57.04%), Query Frame = 1
Query:  280 EITKGTFRIASWRGTQVAVKTLGEEVFTDEDKVKAFIDELALLQKIRHPNVVQFLGAVTQSTPMMIVTEYLPKGDLRAYLKQK-GALKPTLAVKFALDIARGMNYLHENRPEAIIHRDLEPSNILRDDSGHLKVADFGLSSY 702
            E+  G  ++   R   VA+KTL +  +T++ + + F+ E +++ +  HPNV+   G VT+STP+MI+TE++  G L ++L+Q  G       V     IA GM YL +      +HRDL   NIL + +   KV+DFGLS +
Sbjct:  642 EVCSGHLKLPGKREIFVAIKTL-KSGYTEKQR-RDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMN---YVHRDLAARNILVNSNLVCKVSDFGLSRF 778          
The following BLAST results are available for this feature:
BLAST of CX295729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y5487_ARATH9.046e-1640.00Probable LRR receptor-like serine/threonine-protei... [more]
GEFX_DICDI9.046e-1633.97RasGEF domain-containing serine/threonine-protein ... [more]
SRK4_SPOLA1.181e-1535.84Tyrosine-protein kinase isoform SRK4 OS=Spongilla ... [more]
RIPK1_HUMAN1.181e-1531.41Receptor-interacting serine/threonine-protein kina... [more]
NUAK2_RAT1.181e-1533.86NUAK family SNF1-like kinase 2 OS=Rattus norvegicu... [more]
M3K13_PONAB1.181e-1534.78Mitogen-activated protein kinase kinase kinase 13 ... [more]
M3K13_MOUSE1.181e-1534.78Mitogen-activated protein kinase kinase kinase 13 ... [more]
M3K13_HUMAN1.181e-1534.78Mitogen-activated protein kinase kinase kinase 13 ... [more]
M3K13_BOVIN1.181e-1534.78Mitogen-activated protein kinase kinase kinase 13 ... [more]
EPHB2_MOUSE1.181e-1535.92Ephrin type-B receptor 2 OS=Mus musculus GN=Ephb2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05075C07SK DroRLeaf1 Citrus clementina cDNA clone C05075C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295729 ID=CX295729; Name=CX295729; organism=Citrus clementina; type=EST; length=718bp
CCGTGACATCGATAACGCACCGCTTTGCATGTTGCCGCTTGTCAGGGAAG
GACTGATGTTGTACGGCTGTTGCTCAGCCGTGGAGCTGACGTGGATCCTG
AAGACCGCTGGGGCAGCACTCCTCTTGCAGATGCGGTGTATTACAAGCAC
CACGACGTGATCAAACTTTTGGAGGAACATGGTGCAAAGCCTTCAACAGC
TCCCATGCATGTTCAAAATGCTCGTGAAGTCCCAGAGTACGAAATTGATC
CTAAAGAGCTCGATTTTTCCAACAGTGTTGAGATTACAAAGGGAACTTTT
CGGATTGCATCATGGCGTGGAACACAAGTTGCTGTGAAAACACTTGGAGA
GGAAGTTTTCACTGATGAGGATAAAGTGAAGGCATTCATTGACGAGCTTG
CATTACTTCAGAAAATTCGTCATCCAAATGTTGTCCAGTTTTTGGGTGCT
GTAACCCAAAGCACTCCAATGATGATTGTCACAGAATATTTACCCAAGGG
AGATCTCCGTGCATATCTGAAGCAAAAGGGTGCATTAAAGCCCACACTAG
CTGTGAAGTTCGCTCTTGACATTGCTAGGGGAATGAATTATTTGCATGAA
AACAGACCTGAAGCAATAATTCATCGGGATCTTGAGCCTTCAAATATACT
GCGGGATGATTCTGGGCATCTGAAAGTTGCAGACTTTGGACTCAGCAGCT
ACTGAAATTTGCAATACA
back to top