CX295741

Overview
NameCX295741
Unique NameCX295741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_YERPA (Glycogen debranching enzyme OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=glgX PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  334 VSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            ++ G PTP GA     G+NF++FS++A   +LCL       E     +IA+ +   +TGD+WH +L G      YGY+  G F P  GH F+P K+++DP  +A+
Sbjct:    4 LTHGSPTPSGAHFDGKGINFTLFSAHAEQVTLCLF-----DEQGQERQIAMPA---RTGDIWHGYLPGGKPGQRYGYRVSGPFEPSRGHRFNPHKLLIDPRTRAL 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_YERP3 (Glycogen debranching enzyme OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=glgX PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  334 VSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            ++ G PTP GA     G+NF++FS++A   +LCL       E     +IA+ +   +TGD+WH +L G      YGY+  G F P  GH F+P K+++DP  +A+
Sbjct:    4 LTHGSPTPSGAYFDGKGINFTLFSAHAEQVTLCLF-----DEQGQERQIAMPA---RTGDIWHGYLPGGKPGQRYGYRVSGPFDPSRGHRFNPHKLLIDPRTRAL 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SALTY (Glycogen debranching enzyme OS=Salmonella typhimurium GN=glgX PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G  TP GAT    GVNF++FS++A    LC+    D + N+   ++       + GDVWH +L G    + YGY+  G + P +GH F+P K++LDPYA+ V
Sbjct:    3 QLAIGEATPHGATYDGHGVNFTLFSAHAERVELCVF---DSRGNERRYDLP-----GRRGDVWHGYLAGARPGLRYGYRVHGPWQPAQGHRFNPAKLLLDPYARRV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SALTI (Glycogen debranching enzyme OS=Salmonella typhi GN=glgX PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G  TP GAT    GVNF++FS++A    LC+    D + N+   ++       + GDVWH +L G    + YGY+  G + P +GH F+P K++LDPYA+ V
Sbjct:    3 QLAIGEATPHGATYDGHGVNFTLFSAHAERVELCVF---DSRGNERRYDLP-----GRRGDVWHGYLAGARPGLRYGYRVHGPWQPAQGHRFNPAKLLLDPYARQV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SALSV (Glycogen debranching enzyme OS=Salmonella schwarzengrund (strain CVM19633) GN=glgX PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G  TP GAT    GVNF++FS++A    LC+    D + N+   ++       + GDVWH +L G    + YGY+  G + P +GH F+P K++LDPYA+ V
Sbjct:    3 QLAIGEATPHGATYDGHGVNFTLFSAHAERVELCVF---DSRGNERRYDLP-----GRRGDVWHGYLAGARPGLRYGYRVHGPWQPAQGHRFNPAKLLLDPYARRV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SALPK (Glycogen debranching enzyme OS=Salmonella paratyphi A (strain AKU_12601) GN=glgX PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G  TP GAT    GVNF++FS++A    LC+    D + N+   ++       + GDVWH +L G    + YGY+  G + P +GH F+P K++LDPYA+ V
Sbjct:    3 QLAIGEATPHGATYDGHGVNFTLFSAHAERVELCVF---DSRGNERRYDLP-----GRRGDVWHGYLAGARPGLRYGYRVHGPWQPAQGHRFNPAKLLLDPYARRV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SALPC (Glycogen debranching enzyme OS=Salmonella paratyphi C (strain RKS4594) GN=glgX PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G  TP GAT    GVNF++FS++A    LC+    D + N+   ++       + GDVWH +L G    + YGY+  G + P +GH F+P K++LDPYA+ V
Sbjct:    3 QLAIGEATPHGATYDGHGVNFTLFSAHAERVELCVF---DSRGNERRYDLP-----GRRGDVWHGYLAGARPGLRYGYRVHGPWQPAQGHRFNPAKLLLDPYARRV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SALPB (Glycogen debranching enzyme OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=glgX PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G  TP GAT    GVNF++FS++A    LC+    D + N+   ++       + GDVWH +L G    + YGY+  G + P +GH F+P K++LDPYA+ V
Sbjct:    3 QLAIGEATPHGATYDGHGVNFTLFSAHAERVELCVF---DSRGNERRYDLP-----GRRGDVWHGYLAGARPGLRYGYRVHGPWQPAQGHRFNPAKLLLDPYARRV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SALPA (Glycogen debranching enzyme OS=Salmonella paratyphi A GN=glgX PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G  TP GAT    GVNF++FS++A    LC+    D + N+   ++       + GDVWH +L G    + YGY+  G + P +GH F+P K++LDPYA+ V
Sbjct:    3 QLAIGEATPHGATYDGHGVNFTLFSAHAERVELCVF---DSRGNERRYDLP-----GRRGDVWHGYLAGARPGLRYGYRVHGPWQPAQGHRFNPAKLLLDPYARRV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SALNS (Glycogen debranching enzyme OS=Salmonella newport (strain SL254) GN=glgX PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G  TP GAT    GVNF++FS++A    LC+    D + N+   ++       + GDVWH +L G    + YGY+  G + P +GH F+P K++LDPYA+ V
Sbjct:    3 QLAIGEATPHGATYDGHGVNFTLFSAHAERVELCVF---DSRGNERRYDLP-----GRRGDVWHGYLAGARPGLRYGYRVHGPWQPAQGHRFNPAKLLLDPYARRV 100          
The following BLAST results are available for this feature:
BLAST of CX295741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
GLGX_YERPA1.291e-1437.14Glycogen debranching enzyme OS=Yersinia pestis bv.... [more]
GLGX_YERP31.291e-1437.14Glycogen debranching enzyme OS=Yersinia pseudotube... [more]
GLGX_SALTY1.686e-1438.68Glycogen debranching enzyme OS=Salmonella typhimur... [more]
GLGX_SALTI1.686e-1438.68Glycogen debranching enzyme OS=Salmonella typhi GN... [more]
GLGX_SALSV1.686e-1438.68Glycogen debranching enzyme OS=Salmonella schwarze... [more]
GLGX_SALPK1.686e-1438.68Glycogen debranching enzyme OS=Salmonella paratyph... [more]
GLGX_SALPC1.686e-1438.68Glycogen debranching enzyme OS=Salmonella paratyph... [more]
GLGX_SALPB1.686e-1438.68Glycogen debranching enzyme OS=Salmonella paratyph... [more]
GLGX_SALPA1.686e-1438.68Glycogen debranching enzyme OS=Salmonella paratyph... [more]
GLGX_SALNS1.686e-1438.68Glycogen debranching enzyme OS=Salmonella newport ... [more]

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Properties
Property NameValue
Genbank descriptionC05075D07SK DroRLeaf1 Citrus clementina cDNA clone C05075D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295741 ID=CX295741; Name=CX295741; organism=Citrus clementina; type=EST; length=710bp
GAGGCCTGCTATCATGCTAGCTGTCGTCAATCATCATGAACTTTTAATTG
ATTTGTTCAAAGCTAAATGGAGTTGCTTCAATTCACTTCATCACCATTAC
TACACGGTTCTTCTAATTTCATCAACTCTCCAGAATTCTACAAGAGTAAG
CTGAGTAATTTGAAGAAGCCGCCAACGACGACGTTTCGATGTTGCAATCA
TCCGAATAAGACTAGTCATTTTGCAAATTCAAAAGCGTTTGAGAATGTGA
CTAAGAATTTGGTGATCAGAGCGAGCAAAAGTGCTGAGTTGGAGACTGCG
GTTATCGAGAAGCCTCCATCGCAGCGGTTTCAGGTTTCTAAAGGCTATCC
GACGCCGTTTGGCGCTACTCTTCGCGACGGCGGTGTCAATTTCTCTATCT
TCTCCAGCAATGCGGTTTCCGCTAGTCTTTGCTTGATTACTCTCTCGGAT
TTGCAAGAGAATAAGGTCACTGAAGAGATTGCTCTTGATTCTTTCGCTAA
TAAAACTGGAGATGTGTGGCATGTATTTCTCAAAGGAGACTTCAAAGATA
TGTTATATGGCTACAAATTCGACGGAAAGTTTTCTCCCCAAGAAGGACAT
TACTTTGACCCTACGAAGATAGTTCTGGATCCGTATGCAAAAGCAGTGAT
AAGCAGAGCACAATTTGGCGTTTTAGGGCCTGATGAAATTGCTGGCCTCA
ATGGCCTGCT
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