CX295741

Overview
NameCX295741
Unique NameCX295741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SALHS (Glycogen debranching enzyme OS=Salmonella heidelberg (strain SL476) GN=glgX PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G  TP GAT    GVNF++FS++A    LC+    D + N+   ++       + GDVWH +L G    + YGY+  G + P +GH F+P K++LDPYA+ V
Sbjct:    3 QLAIGEATPHGATYDGHGVNFTLFSAHAERVELCVF---DSRGNERRYDLP-----GRRGDVWHGYLAGARPGLRYGYRVHGPWQPAQGHRFNPAKLLLDPYARRV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SALEP (Glycogen debranching enzyme OS=Salmonella enteritidis PT4 (strain P125109) GN=glgX PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G  TP GAT    GVNF++FS++A    LC+    D + N+   ++       + GDVWH +L G    + YGY+  G + P +GH F+P K++LDPYA+ V
Sbjct:    3 QLAIGEATPHGATYDGHGVNFTLFSAHAERVELCVF---DSRGNERRYDLP-----GRRGDVWHGYLAGARPGLRYGYRVHGPWQPAQGHRFNPVKLLLDPYARRV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SALDC (Glycogen debranching enzyme OS=Salmonella dublin (strain CT_02021853) GN=glgX PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G  TP GAT    GVNF++FS++A    LC+    D + N+   ++       + GDVWH +L G    + YGY+  G + P +GH F+P K++LDPYA+ V
Sbjct:    3 QLAIGEATPHGATYDGHGVNFTLFSAHAERVELCVF---DSRGNERRYDLP-----GRRGDVWHGYLAGARPGLRYGYRVHGPWQPAQGHRFNPAKLLLDPYARRV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SALCH (Glycogen debranching enzyme OS=Salmonella choleraesuis GN=glgX PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G  TP GAT    GVNF++FS++A    LC+    D + N+   ++       + GDVWH +L G    + YGY+  G + P +GH F+P K++LDPYA+ V
Sbjct:    3 QLAIGEATPHGATYDGHGVNFTLFSAHAERVELCVF---DSRGNERRYDLP-----GRRGDVWHGYLAGARPGLRYGYRVHGPWQPAQGHRFNPAKLLLDPYARRV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SALA4 (Glycogen debranching enzyme OS=Salmonella agona (strain SL483) GN=glgX PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G  TP GAT    GVNF++FS++A    LC+    D + N+   ++       + GDVWH +L G    + YGY+  G + P +GH F+P K++LDPYA+ V
Sbjct:    3 QLAIGEATPHGATYDGHGVNFTLFSAHAERVELCVF---DSRGNERRYDLP-----GRRGDVWHGYLAGARPGLRYGYRVHGPWQPAQGHRFNPAKLLLDPYARRV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SALG2 (Glycogen debranching enzyme OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=glgX PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G  TP GAT    GVNF++FS++A    LC+    D + N+   ++       + GDVWH +L G    + YGY+  G + P +GH F+P K++LDPYA+ V
Sbjct:    3 QLAIGEATPHGATYDGHGVNFTLFSAHAERVELCVF---DSRGNERRYDLP-----GRRGDVWHGYLAGARPGLRYGYRVHGPWQPVQGHRFNPAKLLLDPYARRV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SERP5 (Glycogen debranching enzyme OS=Serratia proteamaculans (strain 568) GN=glgX PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 39/106 (36.79%), Postives = 60/106 (56.60%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            +++ G   P GA     G+NFS++S++A    LCL    D Q+ +V   +A      ++GD+WH +L G      YGY+  G F P +G  F+P K++LDP A+AV
Sbjct:    3 ELTPGIAAPLGAYYDGNGINFSLYSAHATGVELCLF---DEQQREVRLPLA-----TRSGDIWHGYLPGGKPGQRYGYRVHGPFDPAQGLRFNPNKLLLDPAARAV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ESCF3 (Glycogen debranching enzyme OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=glgX PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G  TP GAT    GVNF++FS++A    LC+    D Q N+V  ++       ++GDVWH +L      + YGY+  G + P  GH F+P K+++DP A+ V
Sbjct:    3 QLTTGKATPHGATYDGHGVNFTLFSAHAERVELCVF---DAQGNEVRFDLP-----GRSGDVWHGYLADARPGLRYGYRVHGPWQPAAGHRFNPAKLLIDPCARRV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ENTS8 (Glycogen debranching enzyme OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=glgX PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G+  P GA     GVNF++FS++A    LCL       E+      AL +   ++GDVWH +L G    + YGY+  G ++P +GH F+P K++LDP A+ V
Sbjct:    3 QLNAGHSAPPGAWFDGAGVNFTLFSAHAEKVELCLF-----DESGNETRYALPA---RSGDVWHGYLPGARPGLRYGYRVHGPWNPAQGHRFNPAKLLLDPCARGV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ERWCT (Glycogen debranching enzyme OS=Erwinia carotovora subsp. atroseptica GN=glgX PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 37/104 (35.58%), Postives = 60/104 (57.69%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAK 642
            ++  G PTP GA+    GVNF++FS++A    LC+       E +  + I L +   ++GD+WH +L      + YG++ DG F P +G  F+P K++LDP A+
Sbjct:    3 ELQTGKPTPLGASFDGNGVNFALFSADAERVELCVF-----DERQQEQRIVLTA---RSGDIWHGYLPDAQPGLRYGFRVDGPFEPSQGLRFNPHKLLLDPCAR 98          
The following BLAST results are available for this feature:
BLAST of CX295741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
GLGX_SALHS1.686e-1438.68Glycogen debranching enzyme OS=Salmonella heidelbe... [more]
GLGX_SALEP1.686e-1438.68Glycogen debranching enzyme OS=Salmonella enteriti... [more]
GLGX_SALDC1.686e-1438.68Glycogen debranching enzyme OS=Salmonella dublin (... [more]
GLGX_SALCH1.686e-1438.68Glycogen debranching enzyme OS=Salmonella cholerae... [more]
GLGX_SALA41.686e-1438.68Glycogen debranching enzyme OS=Salmonella agona (s... [more]
GLGX_SALG22.202e-1438.68Glycogen debranching enzyme OS=Salmonella gallinar... [more]
GLGX_SERP56.406e-1436.79Glycogen debranching enzyme OS=Serratia proteamacu... [more]
GLGX_ESCF38.366e-1437.74Glycogen debranching enzyme OS=Escherichia ferguso... [more]
GLGX_ENTS81.427e-1337.74Glycogen debranching enzyme OS=Enterobacter sakaza... [more]
GLGX_ERWCT2.434e-1335.58Glycogen debranching enzyme OS=Erwinia carotovora ... [more]

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Properties
Property NameValue
Genbank descriptionC05075D07SK DroRLeaf1 Citrus clementina cDNA clone C05075D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295741 ID=CX295741; Name=CX295741; organism=Citrus clementina; type=EST; length=710bp
GAGGCCTGCTATCATGCTAGCTGTCGTCAATCATCATGAACTTTTAATTG
ATTTGTTCAAAGCTAAATGGAGTTGCTTCAATTCACTTCATCACCATTAC
TACACGGTTCTTCTAATTTCATCAACTCTCCAGAATTCTACAAGAGTAAG
CTGAGTAATTTGAAGAAGCCGCCAACGACGACGTTTCGATGTTGCAATCA
TCCGAATAAGACTAGTCATTTTGCAAATTCAAAAGCGTTTGAGAATGTGA
CTAAGAATTTGGTGATCAGAGCGAGCAAAAGTGCTGAGTTGGAGACTGCG
GTTATCGAGAAGCCTCCATCGCAGCGGTTTCAGGTTTCTAAAGGCTATCC
GACGCCGTTTGGCGCTACTCTTCGCGACGGCGGTGTCAATTTCTCTATCT
TCTCCAGCAATGCGGTTTCCGCTAGTCTTTGCTTGATTACTCTCTCGGAT
TTGCAAGAGAATAAGGTCACTGAAGAGATTGCTCTTGATTCTTTCGCTAA
TAAAACTGGAGATGTGTGGCATGTATTTCTCAAAGGAGACTTCAAAGATA
TGTTATATGGCTACAAATTCGACGGAAAGTTTTCTCCCCAAGAAGGACAT
TACTTTGACCCTACGAAGATAGTTCTGGATCCGTATGCAAAAGCAGTGAT
AAGCAGAGCACAATTTGGCGTTTTAGGGCCTGATGAAATTGCTGGCCTCA
ATGGCCTGCT
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