CX295741

Overview
NameCX295741
Unique NameCX295741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_PECCP (Glycogen debranching enzyme OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=glgX PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 36/104 (34.62%), Postives = 60/104 (57.69%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAK 642
            ++  G PTP GA+    GVNF++FS++A    LC+       E +  + + L +   ++GD+WH +L      + YG++ DG F P +G  F+P K++LDP A+
Sbjct:    3 ELQTGKPTPLGASFDGQGVNFALFSADAERVELCIF-----DERQQEQRLELTA---RSGDIWHGYLPAAQPGLRYGFRVDGPFEPSQGLRFNPHKLLLDPCAR 98          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_MYCTU (Glycogen operon protein glgX homolog OS=Mycobacterium tuberculosis GN=glgX PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 43/109 (39.45%), Postives = 52/109 (47.71%), Query Frame = 1
Query:  343 GYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFG 669
            G   P GAT    G NFS+FS  A    LCLI      E+ V   I LD      G VWH +L        YG++  G F P  GH  DP+K++LDPY K+      FG
Sbjct:   22 GNAYPLGATYDGAGTNFSLFSEIAEKVELCLI-----DEDGVESRIPLDEV---DGYVWHAYLPNITPGQRYGFRVHGPFDPAAGHRCDPSKLLLDPYGKSFHGDFTFG 122          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_MYCBO (Glycogen operon protein glgX homolog OS=Mycobacterium bovis GN=glgX PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 43/109 (39.45%), Postives = 52/109 (47.71%), Query Frame = 1
Query:  343 GYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAVISRAQFG 669
            G   P GAT    G NFS+FS  A    LCLI      E+ V   I LD      G VWH +L        YG++  G F P  GH  DP+K++LDPY K+      FG
Sbjct:   22 GNAYPLGATYDGAGTNFSLFSEIAEKVELCLI-----DEDGVESRIPLDEV---DGYVWHAYLPNITPGQRYGFRVHGPFDPAAGHRCDPSKLLLDPYGKSFHGDFTFG 122          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECOUT (Glycogen debranching enzyme OS=Escherichia coli (strain UTI89 / UPEC) GN=glgX PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G PTP GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPTPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECOSM (Glycogen debranching enzyme OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=glgX PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G PTP GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPTPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECOL6 (Glycogen debranching enzyme OS=Escherichia coli O6 GN=glgX PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G PTP GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPTPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECOL5 (Glycogen debranching enzyme OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=glgX PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G PTP GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPTPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECOK1 (Glycogen debranching enzyme OS=Escherichia coli O1:K1 / APEC GN=glgX PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G PTP GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPTPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECO81 (Glycogen debranching enzyme OS=Escherichia coli O81 (strain ED1a) GN=glgX PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G PTP GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPTPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECO45 (Glycogen debranching enzyme OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=glgX PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G PTP GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPTPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
The following BLAST results are available for this feature:
BLAST of CX295741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
GLGX_PECCP5.423e-1334.62Glycogen debranching enzyme OS=Pectobacterium caro... [more]
GLGX_MYCTU7.082e-1339.45Glycogen operon protein glgX homolog OS=Mycobacter... [more]
GLGX_MYCBO7.082e-1339.45Glycogen operon protein glgX homolog OS=Mycobacter... [more]
GLGX_ECOUT7.082e-1334.91Glycogen debranching enzyme OS=Escherichia coli (s... [more]
GLGX_ECOSM7.082e-1334.91Glycogen debranching enzyme OS=Escherichia coli (s... [more]
GLGX_ECOL67.082e-1334.91Glycogen debranching enzyme OS=Escherichia coli O6... [more]
GLGX_ECOL57.082e-1334.91Glycogen debranching enzyme OS=Escherichia coli O6... [more]
GLGX_ECOK17.082e-1334.91Glycogen debranching enzyme OS=Escherichia coli O1... [more]
GLGX_ECO817.082e-1334.91Glycogen debranching enzyme OS=Escherichia coli O8... [more]
GLGX_ECO457.082e-1334.91Glycogen debranching enzyme OS=Escherichia coli O4... [more]

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Properties
Property NameValue
Genbank descriptionC05075D07SK DroRLeaf1 Citrus clementina cDNA clone C05075D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295741 ID=CX295741; Name=CX295741; organism=Citrus clementina; type=EST; length=710bp
GAGGCCTGCTATCATGCTAGCTGTCGTCAATCATCATGAACTTTTAATTG
ATTTGTTCAAAGCTAAATGGAGTTGCTTCAATTCACTTCATCACCATTAC
TACACGGTTCTTCTAATTTCATCAACTCTCCAGAATTCTACAAGAGTAAG
CTGAGTAATTTGAAGAAGCCGCCAACGACGACGTTTCGATGTTGCAATCA
TCCGAATAAGACTAGTCATTTTGCAAATTCAAAAGCGTTTGAGAATGTGA
CTAAGAATTTGGTGATCAGAGCGAGCAAAAGTGCTGAGTTGGAGACTGCG
GTTATCGAGAAGCCTCCATCGCAGCGGTTTCAGGTTTCTAAAGGCTATCC
GACGCCGTTTGGCGCTACTCTTCGCGACGGCGGTGTCAATTTCTCTATCT
TCTCCAGCAATGCGGTTTCCGCTAGTCTTTGCTTGATTACTCTCTCGGAT
TTGCAAGAGAATAAGGTCACTGAAGAGATTGCTCTTGATTCTTTCGCTAA
TAAAACTGGAGATGTGTGGCATGTATTTCTCAAAGGAGACTTCAAAGATA
TGTTATATGGCTACAAATTCGACGGAAAGTTTTCTCCCCAAGAAGGACAT
TACTTTGACCCTACGAAGATAGTTCTGGATCCGTATGCAAAAGCAGTGAT
AAGCAGAGCACAATTTGGCGTTTTAGGGCCTGATGAAATTGCTGGCCTCA
ATGGCCTGCT
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