CX295744
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_SULAC (50S ribosomal protein L18P OS=Sulfolobus acidocaldarius GN=rpl18p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.601e-13 Identity = 61/216 (28.24%), Postives = 91/216 (42.13%), Query Frame = 1 Query: 85 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729 +++K++RRREGKTDY R + + RFV R TNK +I + + GD ++A A++ EL +YG + N AAY TG L R +K V+A A+ D+GL G R+F +P D GK D + G H++AY L + E Y F+ YI++G+ Sbjct: 7 YRIKFRRRREGKTDYYTRYTYVINN-------AIRFVPRLTNKYVIVSVSKFDQKGDIMIAYAHSIELVKKYGWKGDTNNTPAAYLTGYLAGLRAVK---------SGVKA-----------------AVSDIGLFVPVKGGRIFAVIKGAIDAGLKVPVGDL--------GKLKDR------VNGSHISAYAQKLKNENQELYNKLFSSYIQRGL 175
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_HALLT (50S ribosomal protein L18P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl18p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.601e-13 Identity = 62/201 (30.85%), Postives = 83/201 (41.29%), Query Frame = 1 Query: 82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEP 684 R++V +RRRE +TDY R+RL+ K R V R +N + AQ+V+ GD AAA + EL YG + N +AY TG L R + G D A+LD+GL T GN+ F IPH+D A +S+ G H+AAY L DEP Sbjct: 6 RYKVPMRRRREVRTDYHQRLRLLKSGKP-------RLVARVSNAHVRAQLVTPGSDGDETHAAASSEELGEYGWDAPTGNLPSAYLTGYLAGARAVD--------------AGLD------------EAVLDIGLNTATPGNKTFAVQEGAIDAGLEIPHNDDVLADWSR-------------TRGEHIAAYAEQL--DEP 158
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_METST (50S ribosomal protein L18P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl18p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.437e-13 Identity = 58/215 (26.98%), Postives = 90/215 (41.86%), Query Frame = 1 Query: 85 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729 ++V++KRRREGKT+Y R +L++ DK R VVR T+ I Q+V GD L +A + L +G N +AAY TG L ++ L E Y +LD+G+ + G +++ IPH+D S+ I G H+A Y ++ +DE + F YI+ G+ Sbjct: 7 YKVQFKRRREGKTNYNKRYKLVDLDKT-------RMVVRITSNHTITQLVKIGENGDETLVSATSKNLKEFGWLGNGKNTSAAYLTGYLFGKKAL----------------NEGYD----------ETILDIGVQPSIKGTKIYAVLKGALDAGLYIPHNDSILPEDSR-------------IRGEHIAQYAESMDDDEK---NAKFANYIRCGL 172
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_SULSO (50S ribosomal protein L18P OS=Sulfolobus solfataricus GN=rpl18p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.795e-13 Identity = 59/216 (27.31%), Postives = 89/216 (41.20%), Query Frame = 1 Query: 85 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGM 729 ++VK +RRREGKT+Y R + + RF+VR TNK +I QI + GD ++A+A++ EL ++G + N AAY TG L R +K R + D+GL + GNRVF IP D + I G H+A Y L + + Y F+ Y+++G+ Sbjct: 10 YKVKPRRRREGKTNYYKRYVYVISKQT-------RFIVRITNKYVIVQIAKIDPKGDIMIASAHSAELAKKFGWKGDENNTPAAYLTGYLAGLRAIK--------------------------RGVTECVADIGLHVPSKGNRVFYVIKGAIDAGLKIPIG--------------DISIENDRIKGEHIAKYAEKLKSENSDLYSKLFSRYLQRGL 178
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_METTP (50S ribosomal protein L18P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl18p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.795e-13 Identity = 55/183 (30.05%), Postives = 81/183 (44.26%), Query Frame = 1 Query: 82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKY 630 R++V ++RRREG+T+Y R RLI K R VVR N +I Q++ A + GD L + EL YG + N AAY TGLL +++L + Y+ +LD+GL + G+RV+ +PHS + F D ++ EV R Y Sbjct: 6 RYRVPFRRRREGRTNYHVRYRLILSRKP-------RVVVRKGNANITIQLIIAELKGDRTLLTVSSKELRNYGFQHSTGNVPAAYLTGLLFGKKMLAL----------------GYN----------EGILDIGLHSNSRGSRVYAALKGVVDAGVDVPHSPEVF----PDDSRIRGEVIRDY 151
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_METBU (50S ribosomal protein L18P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl18p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.569e-13 Identity = 56/193 (29.02%), Postives = 86/193 (44.56%), Query Frame = 1 Query: 82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYM 660 R++V ++RRREG+TDY R+RL+ ++ R VVR + + + Q+V+ + GD L++A + EL +YG E N AAY TGLL + L + YE V LD+G+ ++ G+RV+ +PH+ F + I G HVA YM Sbjct: 6 RYKVAFRRRREGRTDYHQRLRLLLSRED-------RVVVRKSARHMQIQLVAPDANGDVTLSSAISKELAKYGYEGSTGNTTAAYLTGLLFGYKTLA-----EGYESGV---------------------LDIGIQASSAGSRVYAALKGVVDSGLDVPHNSSVFPSDER-------------IRGEHVAEYM 152
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_METLZ (50S ribosomal protein L18P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl18p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.885e-13 Identity = 53/145 (36.55%), Postives = 71/145 (48.97%), Query Frame = 1 Query: 82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVF 516 R+ V+++RRREG+TDY R RLI +N R VVR TN+ II Q+++A + GD L + EL +G + L N AAY TG+L A R K YEG + D+GL +TG RVF Sbjct: 6 RYFVQFRRRREGRTDYYQRQRLIVSGRN-------RMVVRKTNRHIIIQLIAAQMDGDYTLVHVNSRELVNFGYKGYLGNTPAAYLTGMLFAVRAQKA-----GYEGGI---------------------ADIGLQVASTGARVF 117
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_UNCMA (50S ribosomal protein L18P OS=Uncultured methanogenic archaeon RC-I GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12 Identity = 60/193 (31.09%), Postives = 88/193 (45.60%), Query Frame = 1 Query: 82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAY 657 R++V ++RRREGKTDY R++LI + K R VVR T+ +IAQI+ GD VLAAA + EL + +G + N +AAY TGLL+ + E VE A+LD+GL + G+RV+ +P S+ F D + ++I G + Y Sbjct: 6 RYKVAFRRRREGKTDYHQRLKLI-------VSRKPRLVVRRTSSQVIAQILVTRPEGDKVLAAATSAELAKTFGYKGSGKNTSAAYLTGLLIGYKA---------QEAGVE-----------------EAILDMGLRENRAGSRVYAALKGAVDSGLEVPCSEDVFPS--------DDRIRGEHIAGNTASKY 157
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_NATPD (50S ribosomal protein L18P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12 Identity = 56/196 (28.57%), Postives = 81/196 (41.33%), Query Frame = 1 Query: 82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTL 669 R+ V +RRRE +T+Y R+RL+ K R V R +N AQ+V GD +A+A + +L +G E N AAY TGLL +R ++ G D A+LD+GL T GN+VF +PH++ FA + + G H+A Y L Sbjct: 6 RYTVPMRRRREARTNYHQRLRLLKSGKP-------RLVARKSNNQTKAQLVVTGPQGDETVASATSADLEAFGWEAPTGNLPAAYLTGLLAGKRAIE--------------AGLD------------EAVLDIGLNTATPGNKVFAVQEGVIDAGLEVPHNEDVFADWQR-------------TRGAHIAEYAEQL 155
BLAST of CX295744 vs. ExPASy Swiss-Prot
Match: RL18_DESK1 (50S ribosomal protein L18P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl18p PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.407e-12 Identity = 68/230 (29.57%), Postives = 97/230 (42.17%), Query Frame = 1 Query: 82 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMED---------------EPEKYQSHFTEYIKK 723 R++V +RRREGKT+Y R R+I RF+VR T I Q+ +A GD ++AAA+++EL R+G + G N +AAY TGLL A R L+ G +Y+V D+GL + G VF +P G+ +E + I G H+A+Y L E+ +PE SHF E K Sbjct: 6 RYKVPRRRRREGKTNYYKRYRMIVSGHP-------RFIVRKTLNYIWVQVATARPEGDVIIAAAHSNELRKRFGWKAGTCNTSAAYLTGLLAALRALE--------------KGVEYAVP------------DIGLHRPVKGALVFAAIKAANDAGLKVP----------MGGEVAPSE---ERIRGEHIASYAKILRENGLLEKRFSRYLANGLQPEDLPSHFEEVKNK 189 The following BLAST results are available for this feature:
BLAST of CX295744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 92
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295744 ID=CX295744; Name=CX295744; organism=Citrus clementina; type=EST; length=738bpback to top |