CX295752

Overview
NameCX295752
Unique NameCX295752
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DBP6_VANPO (ATP-dependent RNA helicase DBP6 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP6 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 65/210 (30.95%), Postives = 101/210 (48.10%), Query Frame = 2
Query:   71 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEEKCIVFTSSVES 688
            +++A   S ++   KLE  +    E+  + LQ+  DIL+ TPGRL+DH+ +     L +L +LV+DE DRLL +++Q W   +L   ++D ++                                   +VKMV SATLT +  KL  L  ++P LF+      Y LP  L+ Y L     ++  KPL+L+ LL  +   K +VF  S ES
Sbjct:  281 NNLAQGTSLIVSISKLENSL---KEENKKLLQNEPDILITTPGRLVDHLQSG-AVNLRNLKFLVLDEADRLLNQSFQNWCNELLNKLKTDKQDHMPG------------------------------NIVKMVFSATLTTNTEKLHGLQFYNPKLFVMDSVKLYHLPRMLQEYNLHIPTAKTSYKPLFLLRLLSEINGSKMLVFVKSNES 456          
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DBP6_KLULA (ATP-dependent RNA helicase DBP6 OS=Kluyveromyces lactis GN=DBP6 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14
Identity = 63/215 (29.30%), Postives = 100/215 (46.51%), Query Frame = 2
Query:   71 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP-LFLTTGETRYKLPERLESYKL---ICESKLKPLYLVALLQSLGEE-----KCIVFTSSVES 688
            S ++   S  +   KLE  +    E+  + L ++ DIL+ TPGRL+DH+     F L+ L +LV+DE DRLL +++Q W   +     +D +                              DK    ++KMV SATLT +  KL  L LH+P +FLT     Y +P++L+   +     +S  KPL L+ ++  +        K +VF  S E+
Sbjct:  281 SKLSQGTSLNVSMSKLENSL---KEEHNKFLYNSPDILIITPGRLVDHLQM-ESFDLKTLKFLVLDEADRLLNQSFQNWNQVLFHHLTNDKQ------------------------------DKRPGNVIKMVFSATLTTNAEKLYNLYLHNPKIFLTDSVKLYSIPKKLQELNVNIPTAKSLFKPLLLLRIIHDIKSSASRNAKILVFVKSNEA 461          
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DBP6_PICGU (ATP-dependent RNA helicase DBP6 OS=Pichia guilliermondii GN=DBP6 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.525e-13
Identity = 64/194 (32.99%), Postives = 91/194 (46.91%), Query Frame = 2
Query:  146 DVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKL---ICESKLKPLYLVALLQSLGEEKCI---VFTSSVES 688
            D  Q LQ   DI+V+TPGRL++H+  T G   L+ L YLV+DE DRLL +++Q W  T+  ++R D+        T+ PS                        + K+V SATLT D  +L+ L L  P  +   +        + +P  L+ YKL      S  KPL L   L S  E+K +   VF  S E+
Sbjct:  313 DEAQRLQVVPDIIVSTPGRLVEHL--TNGHINLKSLRYLVIDEADRLLNQSFQNWCETL--MSRIDSNPISELDQTWRPS------------------------VQKLVFSATLTTDAGRLSMLKLQRPRLIIVNDRHELVNELFTVPATLQEYKLSLGSARSSAKPLVLAKFLMS--EQKLVNTLVFAKSNEA 476          
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: DBP6_DEBHA (ATP-dependent RNA helicase DBP6 OS=Debaryomyces hansenii GN=DBP6 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.437e-13
Identity = 58/179 (32.40%), Postives = 85/179 (47.49%), Query Frame = 2
Query:  176 DILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETR------YKLPERLESYKL---ICESKLKPLYLVALLQSLGE-EKCIVFTSS 679
            DI+V+TPGRL+DH+  T G+ +L++L YLV+DE DRLL +++Q W   ++                     F ++K       ER   +     + KM+ SATLT D  KL+ L  H P  +            + LP  L  +KL     +S LKPL L   L S  +    ++FT S
Sbjct:  263 DIIVSTPGRLVDHL--TNGYISLKNLQYLVIDEADRLLNQSFQNWCQILISKI----------------DEFTNIK-------ERNISNSWKLNVQKMIFSATLTTDAGKLSLLKFHKPRLIIVNNKEQLVNEMFSLPATLNEFKLQFGSAKSSLKPLILSKFLLSKNKLANVLIFTKS 416          
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: HAS1_CRYNE (ATP-dependent RNA helicase HAS1 OS=Cryptococcus neoformans GN=HAS1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.906e-12
Identity = 51/180 (28.33%), Postives = 84/180 (46.67%), Query Frame = 2
Query:  158 ELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETR-YKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESL 691
            +L   V+++VATPGRL+DH+  T+GF  ++L  LV+DE DR+L   ++  +  +++L  S+N                                        M+ SAT T     LA++ L   PL++   ET+     + LE   ++CES  + + L   L+   ++K IVF SS  S+
Sbjct:  247 KLVKGVNLIVATPGRLLDHLQNTKGFVFKNLKALVIDEADRILEIGFEEEMKQIIKLLPSENRQ-------------------------------------SMLFSATQTTKVTDLARISLRPGPLYINVDETKEASTADMLEQGYVVCESDQRFMLLFTFLKKNLKKKVIVFFSSCNSV 389          
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: RRP3_ASPNC (ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 51/168 (30.36%), Postives = 75/168 (44.64%), Query Frame = 2
Query:  179 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 682
            I+VATPGRL+DH+  T+GF+L +L YLV+DE DRLL   +   L  +L++   +         TFL                                SAT++     L +  L +PL ++   ++Y+    L    L    K K LYLV LL     +  I+FT +V
Sbjct:  169 IIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERR-------TFL-------------------------------FSATMSSKVESLQRASLSNPLRVSVSTSKYQTVSTLLQSYLFIPQKHKDLYLVYLLNEFAGQSTIIFTRTV 298          
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: RRP3_ASPCL (ATP-dependent rRNA helicase rrp3 OS=Aspergillus clavatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 52/169 (30.77%), Postives = 78/169 (46.15%), Query Frame = 2
Query:  179 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYK-LPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 682
            I+VATPGRL+DH+  T+GF+L  L YLV+DE DRLL   +   L  +L++   +         TFL                                SAT++     L +  L +PL ++    +Y+ +   L+SY+ I   K K +YLV LL     +  I+FT +V
Sbjct:  174 IIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKILPRERR-------TFL-------------------------------FSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYRFI-PHKHKDIYLVYLLNEFVGQSAIIFTRTV 303          
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: RRP3_NEOFI (ATP-dependent rRNA helicase rrp3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 50/168 (29.76%), Postives = 73/168 (43.45%), Query Frame = 2
Query:  179 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 682
            I+VATPGRL+DH+  T+GF+L  L YLV+DE DRLL   +   L  +L++   +         TFL                                SAT++     L +  L +PL ++    +Y+    L    L    K K +YLV LL     +  I+FT +V
Sbjct:  173 IIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERR-------TFL-------------------------------FSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNEFVGQSAIIFTRTV 302          
BLAST of CX295752 vs. ExPASy Swiss-Prot
Match: RRP3_ASPFU (ATP-dependent rRNA helicase rrp3 OS=Aspergillus fumigatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 50/168 (29.76%), Postives = 73/168 (43.45%), Query Frame = 2
Query:  179 ILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSV 682
            I+VATPGRL+DH+  T+GF+L  L YLV+DE DRLL   +   L  +L++   +         TFL                                SAT++     L +  L +PL ++    +Y+    L    L    K K +YLV LL     +  I+FT +V
Sbjct:  173 IIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERR-------TFL-------------------------------FSATMSSKVESLQRASLSNPLRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNEFVGQSTIIFTRTV 302          
The following BLAST results are available for this feature:
BLAST of CX295752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
DBP6_VANPO1.021e-1730.95ATP-dependent RNA helicase DBP6 OS=Vanderwaltozyma... [more]
DBP6_KLULA1.801e-1429.30ATP-dependent RNA helicase DBP6 OS=Kluyveromyces l... [more]
DBP6_PICGU1.525e-1332.99ATP-dependent RNA helicase DBP6 OS=Pichia guillier... [more]
DBP6_DEBHA4.437e-1332.40ATP-dependent RNA helicase DBP6 OS=Debaryomyces ha... [more]
HAS1_CRYNE4.906e-1228.33ATP-dependent RNA helicase HAS1 OS=Cryptococcus ne... [more]
RRP3_ASPNC8.368e-1230.36ATP-dependent rRNA helicase rrp3 OS=Aspergillus ni... [more]
RRP3_ASPCL5.424e-1130.77ATP-dependent rRNA helicase rrp3 OS=Aspergillus cl... [more]
RRP3_NEOFI7.084e-1129.76ATP-dependent rRNA helicase rrp3 OS=Neosartorya fi... [more]
RRP3_ASPFU9.252e-1129.76ATP-dependent rRNA helicase rrp3 OS=Aspergillus fu... [more]

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Properties
Property NameValue
Genbank descriptionC05075E07SK DroRLeaf1 Citrus clementina cDNA clone C05075E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295752 ID=CX295752; Name=CX295752; organism=Citrus clementina; type=EST; length=739bp
AGGAGGTCAGGATGTTTTCGCTGCGATTGCACCTGCAGTGGGTTTGTCTG
TTGGTTTGGCTGTGGGTCAATCTTCTATTGCTGATGAAATTTCGGAGCTT
ATTAAGAGACCTAAGCTCGAGGCAGGAATCTGTTATGACCCTGAAGATGT
TTTGCAAGAGTTACAGAGTGCAGTAGATATATTGGTGGCAACTCCAGGAA
GGCTAATGGACCATATCAATGCTACTAGGGGATTTACCCTCGAGCATCTC
TGTTACCTTGTTGTTGACGAAACTGATCGATTGCTTAGGGAGGCATATCA
GGCTTGGCTGCCCACTGTGCTCCAATTAACTCGATCTGATAATGAAAACC
GCTTTTCTGATGCAAGTACTTTTCTGCCTTCAGCATTTGGCTCTTTAAAA
ACCATAAGAAGATGTGGTGTTGAAAGGGGCTTTAAGGACAAACCTTATCC
TAGGCTTGTGAAGATGGTTTTATCTGCCACGTTAACCCAAGATCCAAATA
AGCTCGCTCAGCTTGATCTGCATCACCCTTTATTCCTGACCACTGGGGAA
ACTCGTTATAAGCTCCCAGAAAGATTGGAGTCCTACAAACTGATTTGTGA
GTCGAAGCTGAAGCCCTTGTATTTGGTTGCACTTCTTCAAAGTTTAGGAG
AGGAGAAATGTATTGTCTTCACATCATCTGTGGAGTCACTCACCGTCTCT
GTACACTACTGAACCATTTTGGTGAATGAGAATAAGATA
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