CX295756

Overview
NameCX295756
Unique NameCX295756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PECCP (3-ketoacyl-CoA thiolase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.767e-15
Identity = 54/153 (35.29%), Postives = 76/153 (49.67%), Query Frame = 2
Query:   23 STVVVSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            S+  +SDGAAA++++S  +   LGL V A+IR  A     P      P      A+  AGL  S I  +E+NEAF+ +                LP            I +  LL    E+VN +GGA++LGHPLGCSGARI  TL+ ++  +
Sbjct:  237 SSSALSDGAAAMLIMSESRAASLGLPVRARIRAMAVVGCDPSIMGYGPVPATKLALKRAGLSLSDIGLFELNEAFAAQT---------------LP-----------CIKDLGLLEQIDEKVNLNGGAIALGHPLGCSGARISTTLINLMESR 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.767e-15
Identity = 54/149 (36.24%), Postives = 75/149 (50.34%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGAAA++++S  +   LGL   AKIR  A A          P     KA+  AGL    ID +E+NEAF+ ++               LP            + +  L  +  E+VN +GGA++LGHPLGCSGARI  TLL ++  K
Sbjct:  241 LSDGAAAMLVMSADRAKALGLTPRAKIRAMAVAGCDAAIMGYGPVPATQKALKRAGLTIGDIDLFELNEAFAAQS---------------LP-----------CVKDLGLQDVVDEKVNLNGGAIALGHPLGCSGARISTTLLNLMEEK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_ECO24 (3-ketoacyl-CoA thiolase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fadA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.508e-14
Identity = 52/149 (34.90%), Postives = 76/149 (51.01%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGAAA++++S  +  ELGL+  A++R  A     P      P      A+  AGL  S I  +E+NEAF+ +               +LP            I +  L+    E++N +GGA++LGHPLGCSGARI  TLL ++  K
Sbjct:  241 LSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCDPAIMGYGPVPASKLALKKAGLSVSDIGVFEMNEAFAAQ---------------ILP-----------CIKDLGLIEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: YQEF_ECOLI (Probable acetyl-CoA acetyltransferase OS=Escherichia coli (strain K12) GN=yqeF PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14
Identity = 46/143 (32.17%), Postives = 72/143 (50.35%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLL 463
            ++DGAAA++++S  K   L L V+A+IR FA     P     AP     + +   G + +++D  E NEAF+ +                             A++  K+L  D  +VN +GGA++LGHP+G SG RILV+L+
Sbjct:  249 INDGAAAVMMMSEAKARALNLPVLARIRAFASVGVDPALMGIAPVYATRRCLERVGWQLAEVDLIEANEAFAAQ-----------------------------ALSVGKMLEWDERRVNVNGGAIALGHPIGASGCRILVSLV 362          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_SHEFN (3-ketoacyl-CoA thiolase OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14
Identity = 50/149 (33.56%), Postives = 76/149 (51.01%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGA+A++++   K   LGL + A+IR  A A          P     KA+A AGL  + +D  E+NEAF+ ++               LP            + +  L  +  E++N +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  241 LSDGASAMLVMEESKARALGLTIRARIRSMAVAGCDAAIMGYGPVPATKKALARAGLSVADLDLIELNEAFAAQS---------------LP-----------CVKDLGLQDVVDEKINLNGGAIALGHPLGCSGARISTTLINLMEEK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_SHEDO (3-ketoacyl-CoA thiolase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=fadA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 50/149 (33.56%), Postives = 76/149 (51.01%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGA+A++++   K   LGL + A+IR  A A          P     KA+A AGL  + +D  E+NEAF+ ++               LP            + +  L  +  E++N +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  241 LSDGASAMLVMEESKARALGLPIRARIRSMAVAGCDAAIMGYGPVPATQKALARAGLTVADLDVIELNEAFAAQS---------------LP-----------CVKDLGLQDVVEEKINLNGGAIALGHPLGCSGARISTTLINLMEEK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PHOPR (3-ketoacyl-CoA thiolase OS=Photobacterium profundum GN=fadA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 51/152 (33.55%), Postives = 76/152 (50.00%), Query Frame = 2
Query:   23 STVVVSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRH 478
            S+  +SDGA+A++++S  +  ELGL + A+++  A A   P      P     KA+  AGL    I   E+NEAF+ ++               LP              +  LL    E+VN +GGA++LGHPLGCSG+RI  TL+  + H
Sbjct:  237 SSSALSDGASAMLVMSEHRAKELGLTIRARVKSMAVAGCDPSIMGYGPVPATQKALKRAGLSIDDIGMVELNEAFAAQS---------------LP-----------CAKDLGLLDKIDEKVNLNGGAIALGHPLGCSGSRISTTLINQMEH 362          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_ECOL6 (3-ketoacyl-CoA thiolase OS=Escherichia coli O6 GN=fadA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 52/149 (34.90%), Postives = 76/149 (51.01%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGAAA++++S  +  +LGL+  A +R  A     P      P      A+  AGL AS I  +E+NEAF+ +               +LP            I +  L+    E++N +GGA++LGHPLGCSGARI  TLL ++  K
Sbjct:  241 LSDGAAAMLVMSESRARDLGLKPRACVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQ---------------ILP-----------CIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PSEHT (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fadA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 49/149 (32.89%), Postives = 78/149 (52.35%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGA+A++++S  K  ELGL + A+I+  A A   P      P     KA+A AG+    +   E+NEAF+ ++               LP            + +  L+ +  E+VN +GGA++LGHPLGCSG+RI  +L+ ++  K
Sbjct:  241 LSDGASAMLVMSEAKAKELGLPIRARIKAMAVAGCDPSIMGYGPVPASKKALAQAGITIDDLGVVELNEAFAAQS---------------LP-----------VMKDLGLMDVVDEKVNLNGGAIALGHPLGCSGSRISTSLIHLMEDK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THIL_RHIME (Acetyl-CoA acetyltransferase OS=Rhizobium meliloti GN=phbA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 49/149 (32.89%), Postives = 74/149 (49.66%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            ++DGAAA +L++  +    G+Q +A+I  +A A   P+   T P     KA+  AG   + I+  E NEAF+ +                             A A  K LG DP  VN +GGA+++GHP+G SGAR+L TLL  ++ +
Sbjct:  250 LNDGAAAALLMTEAEAARRGIQPLARIVSWATAGVDPQIMGTGPIPASRKALEKAGWSVADIELVEANEAFAAQ-----------------------------ACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARVLNTLLFEMKRR 369          
The following BLAST results are available for this feature:
BLAST of CX295756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
FADA_PECCP6.767e-1535.293-ketoacyl-CoA thiolase OS=Pectobacterium carotovo... [more]
FADA_AERHH6.767e-1536.243-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
FADA_ECO241.508e-1434.903-ketoacyl-CoA thiolase OS=Escherichia coli O139:H... [more]
YQEF_ECOLI1.969e-1432.17Probable acetyl-CoA acetyltransferase OS=Escherich... [more]
FADA_SHEFN1.969e-1433.563-ketoacyl-CoA thiolase OS=Shewanella frigidimarin... [more]
FADA_SHEDO2.571e-1433.563-ketoacyl-CoA thiolase OS=Shewanella denitrifican... [more]
FADA_PHOPR2.571e-1433.553-ketoacyl-CoA thiolase OS=Photobacterium profundu... [more]
FADA_ECOL62.571e-1434.903-ketoacyl-CoA thiolase OS=Escherichia coli O6 GN=... [more]
FADA_PSEHT3.358e-1432.893-ketoacyl-CoA thiolase OS=Pseudoalteromonas halop... [more]
THIL_RHIME4.386e-1432.89Acetyl-CoA acetyltransferase OS=Rhizobium meliloti... [more]

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Properties
Property NameValue
Genbank descriptionC05075E11SK DroRLeaf1 Citrus clementina cDNA clone C05075E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295756 ID=CX295756; Name=CX295756; organism=Citrus clementina; type=EST; length=672bp
CTTATCAGTTTTGGGTTGTTGGTCTACTGTTGTGGTCAGTGATGGTGCAG
CAGCACTTGTACTGGTGAGTGGAGTGAAGGTGCTTGAGCTTGGTTTGCAA
GTAATAGCTAAGATTAGGGGATTTGCTGACGCAGCTCAGGCTCCAGAGTG
GTTTACAACTGCTCCATCCCTTGTAATACCAAAAGCCATAGCAAATGCTG
GCTTGGAAGCTTCTCAGATTGATTACTATGAAATAAACGAAGCTTTTTCT
GTAAGAAATCATGTTCCTACCTAGTGATGCCGCTAGTATCCAAAGGTTAG
TTTATTACCATTTCATGTTCTAACCTCCTCTTTGCAGGTTGTAGCTATTG
CCAATCAAAAACTGCTTGGTCTTGATCCTGAACAGGTTAATGCGCATGGT
GGAGCCGTATCCCTGGGTCATCCGTTAGGGTGTAGTGGAGCTCGTATCTT
GGTCACATTATTGGGGGTACTGAGACATAAGAAGGGGAAGTACGGGGTTG
GTGGCATCTGCAATGGTGGAGGGGGGGCATCCGCTCTTGTTCTTGAGCTC
ATGCAAGCGGTGCGGGTGGGACATTCCAAGCTATGAATTGATGATGTGTA
CTGACTGTGGAACATCACCTCCTGTGCTATTGTCTCTTATCTCTTTGTTA
AGTTGTCTACTTGAATGAGAAA
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