CX295759

Overview
NameCX295759
Unique NameCX295759
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length742
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295759 vs. ExPASy Swiss-Prot
Match: LHT1_ARATH (Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.174e-21
Identity = 69/226 (30.53%), Postives = 109/226 (48.23%), Query Frame = 1
Query:   22 GVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKT--MKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQLI 693
            GV I Y +    S+       C     D  P  +    +++ F  V  VLS +P+F+ +  +S+ AAVMS +YSTI      +K  +     G     + GTV      +  F  LGD+AFAY+   +++EIQ T+ S P +     M +  +++  V  L Y      GY  FG+    N+L       P WL+  AN  +VIH++G+YQ++  P+F  +E  L+
Sbjct:  129 GVCIVYMVTGGKSLKKFHELVC----DDCKPIKLTY--FIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTV------FNFFSGLGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNIL--MSLKKPAWLIATANIFVVIHVIGSYQIYAMPVFDMMETLLV 340          
BLAST of CX295759 vs. ExPASy Swiss-Prot
Match: LHTL1_ARATH (Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.615e-21
Identity = 70/226 (30.97%), Postives = 109/226 (48.23%), Query Frame = 1
Query:   22 GVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESK--TMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQLI 693
            GV I Y +    S+       C     D +P  ++   +++ F     VLS +P+F+ +  +S+VAAVMS +YSTI      AK  +     G  +G +  TV         F  LG IAFAY+   +++EIQ T+ S PS      M +  +++  V  L Y      GY  FG+    N+L       P W +  AN  +V+H++G+YQ+F  P+F  +E  L+
Sbjct:  136 GVCIVYMVTGGQSLKKFHEIAC----QDCSPIRLSF--FIMIFASSHFVLSHLPNFNSISGVSLVAAVMSLSYSTIAWTATAAKGVQEDVQYGYKSGTTASTVLS------FFTGLGGIAFAYAGHNVVLEIQATIPSTPSNPSKGPMWRGVVVAYVVVALCYFPVALVGYGVFGNAVLDNVL--MSLETPVWAIATANLFVVMHVIGSYQIFAMPVFDMVETFLV 347          
BLAST of CX295759 vs. ExPASy Swiss-Prot
Match: LHTL2_ARATH (Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.415e-21
Identity = 66/226 (29.20%), Postives = 110/226 (48.67%), Query Frame = 1
Query:   22 GVAIGYTIASSISMMAIERSNCFHSKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESK--TMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQLI 693
            GV I Y +    S+  I    C   K      ++ +  +++ F  +  VL+ +P+F+ +  +S+ AAVMS +YSTI     + K         S    + G V      +    ALGD+AFAY+   +++EIQ T+ S P +     M K  +++  V  + Y       Y  FG+    N+L       P WL+ IANA +V+H++G+YQ++  P+F  +E  L+
Sbjct:  124 GVDIVYMVTGGKSLKKIHDLLCTDCK------NIRTTYWIMIFASIHFVLAHLPNFNSISIVSLAAAVMSLSYSTIAWATSVKKGVHPNVDYSSRASTTSGNV------FNFLNALGDVAFAYAGHNVVLEIQATIPSTPEKPSKIAMWKGVVVAYIVVAICYFPVAFVCYYIFGNSVDDNIL--MTLEKPIWLIAIANAFVVVHVIGSYQIYAMPVFDMLETFLV 335          
BLAST of CX295759 vs. ExPASy Swiss-Prot
Match: LHTL6_ARATH (Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.448e-19
Identity = 61/190 (32.11%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  136 YMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIG--TVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSESKT--MKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQLI 693
            +++ FG V  +LSQ+P+F+ +  +S+ AAVMS  YSTI  G  IA         G +  +S      +     +R F ALG I+FA++   + +EIQ T+ S P       M +  + +  V  + Y       Y AFG     N+L       P WL+  AN  +V+H++G+YQVF  P+F  +E+ ++
Sbjct:  155 WILGFGGVHFILSQLPNFNSVAGVSLAAAVMSLCYSTIAWGGSIA--------HGRVPDVSYDYKATNPGDFTFRVFNALGQISFAFAGHAVALEIQATMPSTPERPSKVPMWQGVIGAYVVNAVCYFPVALICYWAFGQDVDDNVL--MNLQRPAWLIAAANLMVVVHVIGSYQVFAMPVFDLLERMMV 334          
BLAST of CX295759 vs. ExPASy Swiss-Prot
Match: LHTL4_ARATH (Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.175e-19
Identity = 64/204 (31.37%), Postives = 106/204 (51.96%), Query Frame = 1
Query:  100 GDKNPC-HMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIGLGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSF-QALGDIAFAYSYSIILIEIQDTVKSPPSE--SKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQLITI 699
            GD + C  +    +++ F   + VLS + +F+ +  +S+VAAVMS +YSTI     + K A TG        +  G    T  +  +F  ALG++AFAY+   +++EIQ T+ S P     + M K ++++  +    Y      G+  FG+    ++L       P  L+ +AN  +VIHL+G+YQV+  P+F  IE  +I I
Sbjct:  149 GDGDKCTKLRIQHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSVSYSTIAWVASLRKGATTGS-------VEYGYRKRTTSVPLAFLSALGEMAFAYAGHNVVLEIQATIPSTPENPSKRPMWKGAVVAYIIVAFCYFPVALVGFKTFGNSVEESILESLT--KPTALVIVANMFVVIHLLGSYQVYAMPVFDMIESVMIRI 343          
BLAST of CX295759 vs. ExPASy Swiss-Prot
Match: LHTL3_ARATH (Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.072e-18
Identity = 63/206 (30.58%), Postives = 105/206 (50.97%), Query Frame = 1
Query:   94 SKGDKNPCHMNSNPYMIAFGIVEIVLSQIPDFDQLWWLSIVAAVMSFTYSTIG----LGLGIAKVAETGKFRGSLTGISIGTVSETQKIWRSFQALGDIAFAYSYSIILIEIQDTVKSPPSE--SKTMKKASLISVGVTTLFYMLCGCFGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLVGAYQVFCQPLFAFIEKQLI 693
            S GD     +    +++ F   + VLS + +F+ +  +S+VAAVMS +YSTI     L  G+A   E G  R + T + +  +           ALG++AFAY+   +++EIQ T+ S P     + M K ++++  +    Y      G+  FG+    N+L       P  L+ +AN  ++IHL+G+YQV+  P+F  IE  +I
Sbjct:  149 SVGDYECRKLKVRHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSMSYSTIAWVASLTKGVANNVEYGYKRRNNTSVPLAFLG----------ALGEMAFAYAGHNVVLEIQATIPSTPENPSKRPMWKGAIVAYIIVAFCYFPVALVGFWTFGNNVEENILKTLR--GPKGLIIVANIFVIIHLMGSYQVYAMPVFDMIESVMI 342          
The following BLAST results are available for this feature:
BLAST of CX295759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
LHT1_ARATH1.174e-2130.53Lysine histidine transporter 1 OS=Arabidopsis thal... [more]
LHTL1_ARATH2.615e-2130.97Lysine histidine transporter-like 1 OS=Arabidopsis... [more]
LHTL2_ARATH3.415e-2129.20Lysine histidine transporter-like 2 OS=Arabidopsis... [more]
LHTL6_ARATH2.448e-1932.11Lysine histidine transporter-like 6 OS=Arabidopsis... [more]
LHTL4_ARATH4.175e-1931.37Lysine histidine transporter-like 4 OS=Arabidopsis... [more]
LHTL3_ARATH2.072e-1830.58Lysine histidine transporter-like 3 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC05075F02SK DroRLeaf1 Citrus clementina cDNA clone C05075F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295759 ID=CX295759; Name=CX295759; organism=Citrus clementina; type=EST; length=742bp
GTTCAGTATCTGAACCTTTTCGGAGTTGCCATTGGTTACACTATAGCTTC
ATCCATAAGCATGATGGCTATAGAAAGGTCAAATTGCTTTCACTCTAAAG
GAGATAAGAATCCGTGCCATATGAATAGCAATCCATACATGATTGCTTTT
GGCATTGTGGAAATTGTTCTCTCTCAAATACCTGACTTTGATCAGCTATG
GTGGCTCTCAATTGTTGCCGCTGTCATGTCCTTTACTTACTCTACTATTG
GTCTTGGCCTTGGTATTGCTAAAGTTGCAGAAACCGGCAAATTCAGGGGA
AGCTTAACTGGTATTAGTATTGGCACTGTTAGTGAAACTCAAAAGATATG
GAGAAGCTTCCAAGCACTTGGAGACATAGCATTTGCTTATTCTTACTCCA
TCATCCTCATTGAAATTCAGGACACGGTTAAATCTCCACCATCAGAATCA
AAGACAATGAAGAAGGCTTCACTAATAAGTGTTGGAGTCACAACTCTTTT
TTACATGCTCTGTGGCTGCTTTGGCTATGCGGCTTTTGGGGACTTGTCGC
CCGGAAATTTGCTCACTGGTTTTGGCTTTTATAACCCATATTGGCTACTT
GACATAGCCAATGCAGCCATTGTCATCCACCTTGTTGGTGCATACCAAGT
TTTCTGCCAACCCCTCTTTGCATTCATTGAAAAACAGCTCATCACGATTC
CGGATAGCGAATCATCACAAGGATATTAAGTCCCATCCTGGA
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