CX295770

Overview
NameCX295770
Unique NameCX295770
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:461..1147. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295770 vs. ExPASy Swiss-Prot
Match: TINAG_HUMAN (Tubulointerstitial nephritis antigen OS=Homo sapiens GN=TINAG PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 58/221 (26.24%), Postives = 91/221 (41.18%), Query Frame = 2 
Query:   92 DQGSCGSCWAFSTIAAVEGINKIVTGS--LISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDNGGIDTEDDYPY----KAIDGSC-------------------DTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLD---------HGVTAVGYGTENGAD-----YWIVKNSWGSSWGEGGYIRMERNV 637
            DQ +C + WAFST +       I +      +LS Q L+ C      GCN G +D A+ ++   G + +   YP      A +  C                   +   K+ ++        V  N+ + +++ + N PV   ++     F  Y++GI+     T+ +         H V   G+GT  GA      +WI  NSWG SWGE GY R+ R V
Sbjct:  236 DQKNCAASWAFSTASVAADRIAIQSKGRYTANLSPQNLISCCAKNRHGCNSGSIDRAWWYLRKRGLV-SHACYPLFKDQNATNNGCAMASRSDGRGKRHATKPCPNNVEKSNRIYQCSPPYRVSSNETEIMKEIMQNGPVQAIMQVREDFFH-YKTGIYRHVTSTNKESEKYRKLQTHAVKLTGWGTLRGAQGQKEKFWIAANSWGKSWGENGYFRILRGV 454
The following BLAST results are available for this feature:
BLAST of CX295770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
TINAG_HUMAN1.927e-1226.24Tubulointerstitial nephritis antigen OS=Homo sapie... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05075G01SK DroRLeaf1 Citrus clementina cDNA clone C05075G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295770 ID=CX295770; Name=CX295770; organism=Citrus clementina; type=EST; length=687bp
AAAGAGGAGCGATCGTTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACT
CTGTTGATTGGAGGAAGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGA
AGCTGTGGGAGTTGCTGGGCATTTTCAACCATTGCTGCTGTAGAGGGTAT
AAACAAGATTGTTACAGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGG
TGGATTGTGATACATCATATAATGAAGGATGTAATGGTGGTTTGATGGAC
TATGCATTCGAGTTCATTATTGATAATGGAGGTATTGACACAGAAGATGA
TTACCCCTACAAAGCCATTGATGGTAGCTGTGACACATATCGGAAAAATG
CCAAAGTAGTTACAATTGATGACTATGAAGATGTTCCCCTAAATGACGAG
AAAGCTTTGCAAAAGGCAGTTGCAAATCAACCCGTGAGTGTTGCGATTGA
AGGAGGTGGCATGGCATTCCAGTTATATGAATCGGGTATATTTACGGGAA
GATGTGGGACATCTCTGGACCATGGTGTTACTGCTGTTGGATATGGCACA
GAAAATGGAGCTGATTACTGGATTGTGAAGAATTCATGGGGCAGTAGCTG
GGGAGAGGGTGGCTATATTAGGATGGAGCGTAACGTGGCTGGCACTCTCA
CGGGCAAGTGTGGAATTGCCATGGAGGCCTCATATCC
back to top