CX295772

Overview
NameCX295772
Unique NameCX295772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295772_ssr324 microsatellite CX295772_ssr324:324..335. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig669 contig Ccv1_Contig669:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_CYAP4 (50S ribosomal protein L19 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 35/97 (36.08%), Postives = 58/97 (59.79%), Query Frame = 3
Query:  396 RAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            R++EA + +  +P+I  GD V++ + + E N+ R   Y+GIV++++N                 VE VF L+SP ++ IK++   KVRRA+LYYLR+
Sbjct:    8 RSLEAEQLKSNLPEIHVGDTVKVGVIIQEGNKERTQPYEGIVIAKRNSGINATITVRRIFQGVGVERVFLLHSPRVESIKIIKRGKVRRAKLYYLRD 104          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_CARHZ (50S ribosomal protein L19 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 35/97 (36.08%), Postives = 57/97 (58.76%), Query Frame = 3
Query:  396 RAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            +++E  +  + +P+ R GD V++  +V E NR R+  Y+G+V+ ++                  VE  FPL+SP I++I+V+   KVRRARLYYLR+
Sbjct:    5 KSLEEEQLRKDLPEFRPGDTVKVYFKVIEGNRERIQPYEGVVIRKRGSGLSATFTVRRVSYGIGVERTFPLHSPRIEKIEVIRRGKVRRARLYYLRK 101          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_THISH (50S ribosomal protein L19 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 3
Query:  402 IEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            +EA +  R +PD   GD V ++++V E NR RL  ++G+V++++N                 VE VF  YSP + EI+V     VRRA+LYYLR+
Sbjct:    8 LEAEQMNREVPDFTPGDTVVVQVKVKEGNRERLQAFEGVVIAKRNRGLNSAFTVRKISHGEGVERVFQTYSPAVAEIQVKRRGSVRRAKLYYLRD 102          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_SPHWW (50S ribosomal protein L19 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 38/99 (38.38%), Postives = 53/99 (53.54%), Query Frame = 3
Query:  387 LNKRAIEASESERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680
            L    I   +  + IPD R GD + + ++V E  R R+  Y+G+ ++R N                 VE VFPLYSPN++ I+VV    VRRA+LYYLR
Sbjct:    7 LEAEQIAKFKESKSIPDFRPGDTLRVGVKVVEGERTRVQAYEGVCIARANKGMGSSFTVRKISFGEGVERVFPLYSPNVESIEVVRKGVVRRAKLYYLR 105          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_HELMI (50S ribosomal protein L19 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 36/97 (37.11%), Postives = 57/97 (58.76%), Query Frame = 3
Query:  396 RAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            R IEA +  + IPD + GD V++ ++V E NR R+ +++GIV+ R+                  VE  F ++SP + +I+VV   +VRRA+LYYLR+
Sbjct:    6 RQIEAEQLRKDIPDFKPGDTVKVHVKVVEGNRERIQLFEGIVIKRRGGGLSETFTVRRVSYGVAVERTFLVHSPRLDKIEVVRRGRVRRAKLYYLRD 102          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_CLOBM (50S ribosomal protein L19 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplS PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 37/97 (38.14%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  396 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            +AIEA +    +P+   GD V++  ++ E  R R+ I++G V+ RQN                 VE  FP+ SP I++I+VV   KVRRA+LYYLR+
Sbjct:    6 KAIEAEQVRNDLPEFHVGDTVKVHQKIKEGTRERVQIFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRD 102          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_SALAI (50S ribosomal protein L19 OS=Salinispora arenicola (strain CNS-205) GN=rplS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 3
Query:  378 MGILNKRAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            M IL+  A++A      +PD R GD V++   V E NR R+ I++G+V+ RQ                  VE  +P+ SP I  I+VV+   VRRA+LYYLRE
Sbjct:    1 MNILD--ALDAQSKRTDLPDFRAGDTVKVHARVVEGNRSRVQIFQGVVIRRQGDGLRETFLVRKISFGVGVERTYPINSPAIDRIEVVTRGDVRRAKLYYLRE 101          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_GRABC (50S ribosomal protein L19 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 37/89 (41.57%), Postives = 50/89 (56.18%), Query Frame = 3
Query:  417 SERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680
            SERP+P+   GD + + ++V E  R R   ++G+ ++R N                 VE VFPLYSP I EI+VV    VRRA+LYYLR
Sbjct:   17 SERPVPEFVPGDTLRVLVKVVEGERTRTQAFEGVCIARSNRGVNSNFTIRKISYGEGVERVFPLYSPTIAEIQVVRRGDVRRAKLYYLR 105          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_CLOTH (50S ribosomal protein L19 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 3
Query:  396 RAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            +AIE  + ++ +PD   GD V + ++V E NR R+  ++G V++++                  VE +FP++SP +  I+V+   KVRRA+LYYLRE
Sbjct:    5 KAIEQEQLKKDVPDFSIGDYVRVNVKVKEGNRERIQAFEGTVIAKKGSGISETFTVRKISYGVGVERIFPVHSPRVAGIEVIRKGKVRRAKLYYLRE 101          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_ANATD (50S ribosomal protein L19 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  396 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            R IE+    + IPD + GD V +  +V E  R R+  ++G+V+ R+                  VE VFPL+SP +++I+V+   KVRRA+LYY+RE
Sbjct:    5 REIESEMLRKDIPDFKPGDTVRVYFKVIEGGRERVQAFEGLVIKRRGKGLSETFTVRRISYGIGVERVFPLHSPRLEKIEVIRRGKVRRAKLYYIRE 101          
The following BLAST results are available for this feature:
BLAST of CX295772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL19_CYAP42.951e-1136.0850S ribosomal protein L19 OS=Cyanothece sp. (strai... [more]
RL19_CARHZ2.951e-1136.0850S ribosomal protein L19 OS=Carboxydothermus hydr... [more]
RL19_THISH3.855e-1137.8950S ribosomal protein L19 OS=Thioalkalivibrio sp. ... [more]
RL19_SPHWW3.855e-1138.3850S ribosomal protein L19 OS=Sphingomonas wittichi... [more]
RL19_HELMI3.855e-1137.1150S ribosomal protein L19 OS=Heliobacterium modest... [more]
RL19_CLOBM3.855e-1138.1450S ribosomal protein L19 OS=Clostridium botulinum... [more]
RL19_SALAI5.034e-1138.8350S ribosomal protein L19 OS=Salinispora arenicola... [more]
RL19_GRABC5.034e-1141.5750S ribosomal protein L19 OS=Granulibacter bethesd... [more]
RL19_CLOTH5.034e-1135.0550S ribosomal protein L19 OS=Clostridium thermocel... [more]
RL19_ANATD5.034e-1137.1150S ribosomal protein L19 OS=Anaerocellum thermoph... [more]

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Properties
Property NameValue
Genbank descriptionC05075G03SK DroRLeaf1 Citrus clementina cDNA clone C05075G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295772 ID=CX295772; Name=CX295772; organism=Citrus clementina; type=EST; length=707bp
GAGGGGGCTCCCAGGTTCTTCCTCAGGCTCTGCATTGGATCCCAAGAAGT
TCCACTCAGTGCATTCCTTCAAAGAGGCTAGGGTTTTCAACAGTTCTTTC
TCGCGGCCCCTTTGTGAGCCATGGGGTTTCAGTTTCAACGAAGCCTATAG
GGTGGAATTTGGGCTTTTTCGTAAATGCCCAAGTGAAAGATAGTTTTGTG
GTTAGGGCGGAGTCAAACGAAGAAGCGGAAGCGAATGAGAGTATTGAAGA
GGAGCAAAACGAGGCCGTTCAAGCACAAGGTGATGTTGTGGTAGCTGTAG
AAGCTGAATCTGAGGATAAGGTTGAAGAAGAAGAAGTGAAAGCACCCAGA
AAGCCCAGGGTTAAACTTGGAGATATCATGGGGATATTGAATAAGAGGGC
GATTGAGGCATCGGAGAGTGAAAGACCAATTCCAGATATTAGGACGGGTG
ATGTTGTGGAGATTAAATTGGAAGTTCCTGAAAATAGGCGTAGGTTGTCC
ATTTACAAAGGTATTGTTATGTCAAGGCAAAATGCTGGGATCCACACTAC
AATTCGAATTCGGAGGATTATTGCTGGCATAGGGGTTGAGATCGTATTCC
CTCTTTATTCGCCAAACATCAAGGAGATAAAAGTTGTCTCCCACAGGAAA
GTGAGGAGGGCAAGGCTGTACTATCTTAGAGAAAGCTTCCTAGACTCTCA
CTTTCAA
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