CX295772

Overview
NameCX295772
Unique NameCX295772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295772_ssr324 microsatellite CX295772_ssr324:324..335. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig669 contig Ccv1_Contig669:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_CLOBK (50S ribosomal protein L19 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  396 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            +AIEA +    +P+   GD V++  ++ E  R R+ +++G V+ RQN                 VE  FP+ SP I++I+VV   KVRRA+LYYLR+
Sbjct:    6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRD 102          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_CLOBJ (50S ribosomal protein L19 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  396 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            +AIEA +    +P+   GD V++  ++ E  R R+ +++G V+ RQN                 VE  FP+ SP I++I+VV   KVRRA+LYYLR+
Sbjct:    6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRD 102          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_CLOBH (50S ribosomal protein L19 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  396 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            +AIEA +    +P+   GD V++  ++ E  R R+ +++G V+ RQN                 VE  FP+ SP I++I+VV   KVRRA+LYYLR+
Sbjct:    6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRD 102          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_CLOB6 (50S ribosomal protein L19 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  396 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            +AIEA +    +P+   GD V++  ++ E  R R+ +++G V+ RQN                 VE  FP+ SP I++I+VV   KVRRA+LYYLR+
Sbjct:    6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRD 102          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_CLOB1 (50S ribosomal protein L19 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  396 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            +AIEA +    +P+   GD V++  ++ E  R R+ +++G V+ RQN                 VE  FP+ SP I++I+VV   KVRRA+LYYLR+
Sbjct:    6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRD 102          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_ACIC1 (50S ribosomal protein L19 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 35/95 (36.84%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  402 IEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            ++AS     IPD R GD +++ + V E NR R+ +++G+V+ RQ                  VE  FP+++P I++I+VV+   VRRA+LYYLR+
Sbjct:    7 VDASSLRTDIPDFRPGDTLKVHVRVVEGNRSRVQVFQGVVIRRQGSGVRETFTVRKVSFGVGVERTFPVHTPVIEKIEVVTRGHVRRAKLYYLRD 101          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_STRE4 (50S ribosomal protein L19 OS=Streptococcus equi subsp. equi (strain 4047) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 3
Query:  429 IPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680
            IP  R GD V +  +V E +R R+ I++G+V+SR++                 VE  FP+++P +++I+VV H KVRRA+LYYLR
Sbjct:   17 IPSFRPGDTVRVHAKVVEGSRERIQIFEGVVISRKSQGISEMYTVRKISSGIGVERTFPIHTPRVEKIEVVRHGKVRRAKLYYLR 101          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_RHIE6 (50S ribosomal protein L19 OS=Rhizobium etli (strain CIAT 652) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 3
Query:  414 ESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            E++R +P+   GD V + ++V E NR R+  Y+G+ ++R                   VE VFP+YSP I+ + VV   KVRRA+LYYLR+
Sbjct:   16 EAKRTLPEFSPGDTVRVNVKVTEGNRTRVQAYEGVCIARSGGGLQENFTVRKISYGEGVERVFPVYSPLIESVDVVRRGKVRRAKLYYLRD 106          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_MARMM (50S ribosomal protein L19 OS=Maricaulis maris (strain MCS10) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = 3
Query:  420 ERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            E+ IPD   GD + + + + E  R R+ +++G+ ++R                   VE VFPLYSPN+++I++    KVRRA+LYYLR+
Sbjct:   18 EKTIPDFSAGDTLRVHVRIKEGERERIQVFEGVCIARNGGGLNESYTVRKISFGEGVERVFPLYSPNVEQIEIKRKGKVRRAKLYYLRD 106          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_BACLD (50S ribosomal protein L19 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  429 IPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            +P  R GD + + ++V E NR R+ +++G+V+ R+                  VE  FPL++P I +I+VV H KVRRA+LYYLRE
Sbjct:   17 LPAFRPGDTLRVHVKVVEGNRERIQVFEGVVIKRRGGGISETFTVRKISYGVGVERTFPLHTPKIAKIEVVRHGKVRRAKLYYLRE 102          
The following BLAST results are available for this feature:
BLAST of CX295772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL19_CLOBK6.575e-1137.1150S ribosomal protein L19 OS=Clostridium botulinum... [more]
RL19_CLOBJ6.575e-1137.1150S ribosomal protein L19 OS=Clostridium botulinum... [more]
RL19_CLOBH6.575e-1137.1150S ribosomal protein L19 OS=Clostridium botulinum... [more]
RL19_CLOB66.575e-1137.1150S ribosomal protein L19 OS=Clostridium botulinum... [more]
RL19_CLOB16.575e-1137.1150S ribosomal protein L19 OS=Clostridium botulinum... [more]
RL19_ACIC16.575e-1136.8450S ribosomal protein L19 OS=Acidothermus cellulol... [more]
RL19_STRE48.587e-1140.0050S ribosomal protein L19 OS=Streptococcus equi su... [more]
RL19_RHIE68.587e-1138.4650S ribosomal protein L19 OS=Rhizobium etli (strai... [more]
RL19_MARMM8.587e-1135.9650S ribosomal protein L19 OS=Maricaulis maris (str... [more]
RL19_BACLD8.587e-1139.5350S ribosomal protein L19 OS=Bacillus licheniformi... [more]

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Properties
Property NameValue
Genbank descriptionC05075G03SK DroRLeaf1 Citrus clementina cDNA clone C05075G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295772 ID=CX295772; Name=CX295772; organism=Citrus clementina; type=EST; length=707bp
GAGGGGGCTCCCAGGTTCTTCCTCAGGCTCTGCATTGGATCCCAAGAAGT
TCCACTCAGTGCATTCCTTCAAAGAGGCTAGGGTTTTCAACAGTTCTTTC
TCGCGGCCCCTTTGTGAGCCATGGGGTTTCAGTTTCAACGAAGCCTATAG
GGTGGAATTTGGGCTTTTTCGTAAATGCCCAAGTGAAAGATAGTTTTGTG
GTTAGGGCGGAGTCAAACGAAGAAGCGGAAGCGAATGAGAGTATTGAAGA
GGAGCAAAACGAGGCCGTTCAAGCACAAGGTGATGTTGTGGTAGCTGTAG
AAGCTGAATCTGAGGATAAGGTTGAAGAAGAAGAAGTGAAAGCACCCAGA
AAGCCCAGGGTTAAACTTGGAGATATCATGGGGATATTGAATAAGAGGGC
GATTGAGGCATCGGAGAGTGAAAGACCAATTCCAGATATTAGGACGGGTG
ATGTTGTGGAGATTAAATTGGAAGTTCCTGAAAATAGGCGTAGGTTGTCC
ATTTACAAAGGTATTGTTATGTCAAGGCAAAATGCTGGGATCCACACTAC
AATTCGAATTCGGAGGATTATTGCTGGCATAGGGGTTGAGATCGTATTCC
CTCTTTATTCGCCAAACATCAAGGAGATAAAAGTTGTCTCCCACAGGAAA
GTGAGGAGGGCAAGGCTGTACTATCTTAGAGAAAGCTTCCTAGACTCTCA
CTTTCAA
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