CX295774

Overview
NameCX295774
Unique NameCX295774
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295774_ssr87 microsatellite CX295774_ssr87:87..98. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11659 contig Ccv1_Contig11659:14..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: GTR12_MACFA (Solute carrier family 2, facilitated glucose transporter member 12 OS=Macaca fascicularis GN=SLC2A12 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17
Identity = 50/149 (33.56%), Postives = 81/149 (54.36%), Query Frame = 2
Query:  242 AAILASMTSILLGYDIGVMSGAALYIKDDFKVSDTKIEILIGILNIFSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSN 688
            +++ A+++ +L+GY++G++SGA L IK    +S  + E+++  L I +L+ SL  G   D  GRR  I+                 +Y  L+ GR   GV +  +++   VY AE++P   RG L S  E+ I  GIL  Y+SNY F+N
Sbjct:   47 SSVTAAVSGLLVGYELGIISGALLQIKTLLTLSCHEQEMVVSSLLIGALLASLTGGVLIDRYGRRTAIILSSCLLGLGSLVLILSLSYTVLIVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILSAYISNYAFAN 195          
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: GTR12_HUMAN (Solute carrier family 2, facilitated glucose transporter member 12 OS=Homo sapiens GN=SLC2A12 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17
Identity = 50/149 (33.56%), Postives = 81/149 (54.36%), Query Frame = 2
Query:  242 AAILASMTSILLGYDIGVMSGAALYIKDDFKVSDTKIEILIGILNIFSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSN 688
            +++ A+++ +L+GY++G++SGA L IK    +S  + E+++  L I +L+ SL  G   D  GRR  I+                 +Y  L+ GR   GV +  +++   VY AE++P   RG L S  E+ I  GIL  Y+SNY F+N
Sbjct:   43 SSVTAAVSGLLVGYELGIISGALLQIKTLLALSCHEQEMVVSSLVIGALLASLTGGVLIDRYGRRTAIILSSCLLGLGSLVLILSLSYTVLIVGRIAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVIGILSAYISNYAFAN 191          
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: GTR12_BOVIN (Solute carrier family 2, facilitated glucose transporter member 12 OS=Bos taurus GN=SLC2A12 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.789e-17
Identity = 50/154 (32.47%), Postives = 82/154 (53.25%), Query Frame = 2
Query:  227 LYASGAAILASMTSILLGYDIGVMSGAALYIKDDFKVSDTKIEILIGILNIFSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSN 688
            +Y   +++ A+++  L+GY++G++SGA L I+    ++  + E+++  L I +L+ SL  G   D  GRR  I+                 +Y  L+GGR   GV +  ++    VY AE++P   RG L S  E+ I  GIL  Y+SNY F+N
Sbjct:   42 MYTLLSSVTAAVSGFLVGYELGIISGALLQIRTLLVLTCHEQEMVVSSLLIGALLASLIGGVLIDRYGRRAAIILSSCLLGLGSLVLIISLSYTTLIGGRIAIGVFISLSSTATCVYIAEIAPQHRRGLLVSLNELMIVIGILFAYISNYAFAN 195          
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: GTR12_MOUSE (Solute carrier family 2, facilitated glucose transporter member 12 OS=Mus musculus GN=Slc2a12 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.060e-16
Identity = 47/148 (31.76%), Postives = 79/148 (53.38%), Query Frame = 2
Query:  245 AILASMTSILLGYDIGVMSGAALYIKDDFKVSDTKIEILIGILNIFSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSN 688
            ++ A+++ +L+GY++G++SGA L I+    ++  + E+++  L I + + SL  G   D  GRR  I+                 +Y  L+ GR   GV +  +++   VY AE++P   RG L S  E+ I  GIL  Y+SNY F+N
Sbjct:   48 SVTAAISGLLVGYELGLISGALLQIRTLLALTCHEQEMVVSSLLIGAFLASLTGGVLIDRYGRRLAIILSSCLLGLGSLVLIMSLSYTLLIMGRVAIGVSISLSSIATCVYIAEIAPQHRRGLLVSLNELMIVTGILFAYISNYAFAN 195          
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: INT3_ARATH (Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.261e-16
Identity = 50/158 (31.65%), Postives = 81/158 (51.27%), Query Frame = 2
Query:  230 YASGAAILASMTSILLGYDIGVMSGAALYIKDDFKVSDTKI---EILIGILNIFSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSNYP 694
            Y    A+ A +  +L GY+ GV++GA LYIK++F   D K    EI++ +    +++G+   G  +D  GRR +++                     ++ GR + G GVG A++ +P+Y +E+SPA  RG L S   + I GG  L Y+ N  F + P
Sbjct:   25 YIMRLALSAGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGAAIGGWYNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLYISEMSPARIRGALVSTNGLLITGGQFLSYLINLAFVHTP 182          
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: MSSP2_ARATH (Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.871e-16
Identity = 50/156 (32.05%), Postives = 80/156 (51.28%), Query Frame = 2
Query:  245 AILASMTSILLGYDIGVMSGAALYIKDDFKV-SDTKIEILIGILNIFSLIGSL----AAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSNYPS 697
            AI A++ ++L G+D   ++GA LYIK +F + S+  +E   G++   SLIG+      +G  +DW+GRR  ++                 N   L+ GR + G GVG    + P+Y +E +P   RG L + P+   +GG+ L Y   +G S  PS
Sbjct:    8 AIAAAVGNLLQGWDNATIAGAVLYIKKEFNLESNPSVE---GLIVAMSLIGATLITTCSGGVADWLGRRPMLILSSILYFVGSLVMLWSPNVYVLLLGRLLDGFGVGLVVTLVPIYISETAPPEIRGLLNTLPQFTGSGGMFLSYCMVFGMSLMPS 160          
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: INT4_ARATH (Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.999e-15
Identity = 51/158 (32.28%), Postives = 78/158 (49.37%), Query Frame = 2
Query:  230 YASGAAILASMTSILLGYDIGVMSGAALYIKDDFKVSDTKIEILIGILNIF---SLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSNYP 694
            Y    A+ A +  +L GYD GV+SGA L+IK+DF   D K  +   I+++    +++G+   G  +D  GRR +I+                     ++ GR   G GVG A++ +P+Y +E SPA  RG L S   + I GG    Y+ N  F + P
Sbjct:   26 YIMRLALSAGIGGLLFGYDTGVISGALLFIKEDFDEVDKKTWLQSTIVSMAVAGAIVGAAVGGWINDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMASMTSPLYISEASPARIRGALVSTNGLLITGGQFFSYLINLAFVHTP 183          
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: YWTG_BACSU (Putative metabolite transport protein ywtG OS=Bacillus subtilis GN=ywtG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 46/144 (31.94%), Postives = 78/144 (54.17%), Query Frame = 2
Query:  272 LLGYDIGVMSGAALYIKDDFKVSDTKIEILIGILNIFSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSNYPSLR 703
            L GYD GV+SGA L++K +  ++     +++  L + +++GS AAG+ +D  GR+  I+                 N   ++  R + G+ VG +  I P+Y +EL+P   RG L+S  ++ I  GILL Y+ NY F++  + R
Sbjct:   19 LYGYDTGVISGAILFMKKELGLNAFTEGLVVSSLLVGAILGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGALSSLNQLMITVGILLSYIVNYIFADAEAWR 162          
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: XYLT_LACBR (D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 42/145 (28.97%), Postives = 77/145 (53.10%), Query Frame = 2
Query:  257 SMTSILLGYDIGVMSGAALYIKDDFKVSDTKIEILIGILNIFSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSNY 691
            ++  +L GYD GV+SGA L+I+    +   +   ++  + + +++G+   G +SD  GRR  ++                  +  L+  R + G+ VG A+ + P Y AEL+P+  RG ++S  ++ +  GILL Y++NY FS +
Sbjct:   14 ALGGLLFGYDTGVISGAILFIQKQMNLGSWQQGWVVSAVLLGAILGAAIIGPSSDRFGRRKLLLLSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGAASALIPTYLAELAPSDKRGTVSSLFQLMVMTGILLAYITNYSFSGF 158          
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: CSBC_BACSU (Probable metabolite transport protein csbC OS=Bacillus subtilis GN=csbC PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 44/149 (29.53%), Postives = 75/149 (50.34%), Query Frame = 2
Query:  257 SMTSILLGYDIGVMSGAALYIKDDFKVSDTKIEILIGILNIFSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSNYPSLR 703
            ++  +L GYD GV+SGA L+I +D  ++     +++ +L + ++ GS  +G  SD  GRR  +                      L+  R + G+ VG +  + PVY +E++P   RG L +   + I  GILL Y+ NY F+ + + R
Sbjct:   15 ALGGLLYGYDTGVISGALLFINNDIPLTTLTEGLVVSMLLLGAIFGSALSGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRGTLGTMNNLMIVTGILLAYIVNYLFTPFEAWR 163          
The following BLAST results are available for this feature:
BLAST of CX295774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
GTR12_MACFA1.252e-1733.56Solute carrier family 2, facilitated glucose trans... [more]
GTR12_HUMAN1.252e-1733.56Solute carrier family 2, facilitated glucose trans... [more]
GTR12_BOVIN2.789e-1732.47Solute carrier family 2, facilitated glucose trans... [more]
GTR12_MOUSE1.060e-1631.76Solute carrier family 2, facilitated glucose trans... [more]
INT3_ARATH5.261e-1631.65Probable inositol transporter 3 OS=Arabidopsis tha... [more]
MSSP2_ARATH6.871e-1632.05Monosaccharide-sensing protein 2 OS=Arabidopsis th... [more]
INT4_ARATH1.999e-1532.28Inositol transporter 4 OS=Arabidopsis thaliana GN=... [more]
YWTG_BACSU3.410e-1531.94Putative metabolite transport protein ywtG OS=Baci... [more]
XYLT_LACBR4.453e-1528.97D-xylose-proton symporter OS=Lactobacillus brevis ... [more]
CSBC_BACSU5.816e-1529.53Probable metabolite transport protein csbC OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionC05075G05SK DroRLeaf1 Citrus clementina cDNA clone C05075G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295774 ID=CX295774; Name=CX295774; organism=Citrus clementina; type=EST; length=716bp
GGCTTCTTGTTTTTGTAGTAGTTTCATGGCAGCTTGAGTTTCTATCTCTT
CTTCCAACCCTAGCTTATATAATTAAACACTCGCAGTCTCTCTCTCTCGC
TCTCTGGCTAGCTAGCTTAGCAACAACATGGCTGCAGGCTTGGGAGCCAA
GAGCAACAACAATACTGACCCTCAAAACCAAAAAACTCTTGCGGATTTTG
ATCCCCAAAAGAAACCAAAAAGAAATCTGTATGCCTCCGGCGCTGCCATT
TTGGCTTCCATGACTTCAATCTTACTAGGTTATGACATTGGAGTAATGAG
TGGAGCTGCACTCTACATCAAAGACGACTTTAAAGTCAGTGACACAAAAA
TCGAGATCTTAATTGGAATCTTGAATATTTTCTCACTCATCGGCTCACTG
GCCGCCGGCAGAACCTCCGACTGGATTGGCCGCCGGTACACTATCGTGTT
AGCCGGGGCCATCTTCTTCGCCGGAGCGCTGCTCATGGGGTTTGCCACAA
ACTATGCTTTCCTCATGGGGGGTCGCTTCGTCGCCGGCGTCGGCGTCGGA
TACGCTGCATTGATCGCTCCCGTATACACAGCTGAACTCTCTCCGGCTTC
CACTCGAGGCTTTCTCACCTCATTTCCTGAGGTTTTCATTAACGGCGGGA
TATTACTTGGCTACGTCTCGAACTACGGATTCTCCAACTACCCCTCACTT
AGGCTGGCGCATGATG
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