CX295774

Overview
NameCX295774
Unique NameCX295774
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295774_ssr87 microsatellite CX295774_ssr87:87..98. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11659 contig Ccv1_Contig11659:14..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: MYCT_RAT (Proton myo-inositol cotransporter OS=Rattus norvegicus GN=Slc2a13 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 47/152 (30.92%), Postives = 74/152 (48.68%), Query Frame = 2
Query:  230 YASGAAILASMTSILLGYDIGVMSGAALYIKDDFKVSDTKIEILIGILNIFSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFS 685
            +   AA  +++   L GYD GV+SGA L ++   ++     E+L+      + + +LA G  +  +GRR  I+                 N   L+ GR V G+G+G A++  PVY AE+SP + RG L +   +FI GG     V +  FS
Sbjct:   50 FVYAAAAFSALGGFLFGYDTGVVSGAMLLLRRQMRLGAMWQELLVSGAVGAAAVAALAGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFS 201          
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: MYCT_MOUSE (Proton myo-inositol cotransporter OS=Mus musculus GN=Slc2a13 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 47/152 (30.92%), Postives = 74/152 (48.68%), Query Frame = 2
Query:  230 YASGAAILASMTSILLGYDIGVMSGAALYIKDDFKVSDTKIEILIGILNIFSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFS 685
            +   AA  +++   L GYD GV+SGA L ++   ++     E+L+      + + +LA G  +  +GRR  I+                 N   L+ GR V G+G+G A++  PVY AE+SP + RG L +   +FI GG     V +  FS
Sbjct:   50 FVYAAAAFSALGGFLFGYDTGVVSGAMLLLRRQMRLGAMWQELLVSGAVGAAAVAALAGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFS 201          
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: MYCT_HUMAN (Proton myo-inositol cotransporter OS=Homo sapiens GN=SLC2A13 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 47/147 (31.97%), Postives = 71/147 (48.30%), Query Frame = 2
Query:  245 AILASMTSILLGYDIGVMSGAALYIKDDFKVSDTKIEILIGILNIFSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFS 685
            A+ +++   L GYD GV+SGA L +K    +     E+L+      + + +LA G  +   GRR  I+                 N   L+ GR V G+G+G A++  PVY AE+SP + RG L +   +FI GG     V +  FS
Sbjct:   66 AVFSALGGFLFGYDTGVVSGAMLLLKRQLSLDALWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFS 212          
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: MSSP3_ARATH (Monosaccharide-sensing protein 3 OS=Arabidopsis thaliana GN=MSSP3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.692e-14
Identity = 51/161 (31.68%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  245 AILASMTSILLGYDIGVMSGAALYIKDDFKVS-DTKIEILIGILNIFSLIGSLA----AGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFS--NYPSLRL 706
            A+ A++ ++L G+D   ++GA +YIK +F +  + KIE   G++   SLIG+      +G  SD +GRR  ++                 N   L+  R + G G+G A  + P+Y +E +P+  RG L +FP+   +GG+ L Y   +G S    PS RL
Sbjct:    8 ALAAAIGNMLQGWDNATIAGAVIYIKKEFHLEKEPKIE---GLIVAMSLIGATLITTFSGPVSDKVGRRSMLILSSVLYFLSSIVMFWSPNVYVLLFARLLDGFGIGLAVTLVPIYISETAPSEIRGLLNTFPQFCGSGGMFLSYCLVFGMSLQESPSWRL 165          
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: HXT10_YEAST (Hexose transporter HXT10 OS=Saccharomyces cerevisiae GN=HXT10 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.210e-14
Identity = 48/164 (29.27%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  239 GAAILASMTSILLGYDIGVMSG-----------AALYIKDDFKVSDTKIEILIGILNIFSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTN--YAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSNY 691
            G  ++ +    + G+D G +SG             L     F++SD +  +++GI NI   +G L  GR  D  GR+  ++                ++  Y + +G R V+G+GVG  A+++P   +E+SP   RG   SF ++ I  GI LGY +NYG   Y
Sbjct:   51 GLCLMIAFGGFIFGWDTGTISGFINQTDFKRRFGELQRDGSFQLSDVRTGLIVGIFNIGCALGGLTLGRLGDIYGRKIGLMCVILVYVVGIVIQIASSDKWYQYFIG-RIVSGMGVGGVAVLSPTLISEISPKHLRGTCVSFYQLMITLGIFLGYCTNYGTKKY 213          
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: GALP_ECOLI (Galactose-proton symporter OS=Escherichia coli (strain K12) GN=galP PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 42/145 (28.97%), Postives = 78/145 (53.79%), Query Frame = 2
Query:  251 LASMTSILLGYDIGVMSGAALYIKDDFKVSDTKIEILIGILNIFSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFS 685
            LA++  +L G DIGV++GA  +I D+F+++    E ++  +   + +G++ +G  S  +GR+ +++                 N   L+  R + G+ VG A+  AP+Y +E++P   RG + S  ++ I  GIL  Y+S+  FS
Sbjct:   21 LAALAGLLFGLDIGVIAGALPFIADEFQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFS 165          
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: GALP_ECOL6 (Galactose-proton symporter OS=Escherichia coli O6 GN=galP PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.871e-13
Identity = 42/145 (28.97%), Postives = 78/145 (53.79%), Query Frame = 2
Query:  251 LASMTSILLGYDIGVMSGAALYIKDDFKVSDTKIEILIGILNIFSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFS 685
            LA++  +L G DIGV++GA  +I D+F+++    E ++  +   + +G++ +G  S  +GR+ +++                 N   L+  R + G+ VG A+  AP+Y +E++P   RG + S  ++ I  GIL  Y+S+  FS
Sbjct:   21 LAALAGLLFGLDIGVIAGALPFIADEFQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFS 165          
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: YD387_YEAST (Probable metabolite transport protein YDR387C OS=Saccharomyces cerevisiae GN=YDR387C PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.192e-13
Identity = 43/142 (30.28%), Postives = 72/142 (50.70%), Query Frame = 2
Query:  254 ASMTSILLGYDIGVMSGAALYIKDD----FKVSDTKIEILIGILNIFSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYV 667
            A++  +L GYD GV+SG  L +K +      ++D + E++    ++ S  GS+ A   +D  GRR T+                     FL+ GR + G+ VG +A   P++ +E+SP+  RGF+ +   + I GG L+ YV
Sbjct:   46 ATIGGLLFGYDTGVISGVLLSLKPEDLSLVVLTDVQKELITSSTSVGSFFGSILAFPLADRYGRRITLAICCSIFILAAIGMAIARTLTFLICGRLLVGIAVGVSAQCVPLFLSEISPSRIRGFMLTLNIIAITGGQLVSYV 187          
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: HXT2_YEAST (High-affinity glucose transporter HXT2 OS=Saccharomyces cerevisiae GN=HXT2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 53/195 (27.18%), Postives = 89/195 (45.64%), Query Frame = 2
Query:  164 TDPQNQKTLADFDPQKKPKRNLYASGAAI----LASMTSILLGYDIGVMSGAALYIKDDFK-------------VSDTKIEILIGILNIFSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTN--YAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSNY 691
            TD    +T +++   + P + + A    I    + +    + G+D G +SG     + DFK             +SD +  +++GI NI    G L  GR  D  GRR  ++                ++  Y + +G R ++G+GVG  A+++P   +E +P   RG   SF ++ I  GI LGY +NYG  +Y
Sbjct:   29 TDESPIQTKSEYTNAELPAKPIAAYWTVICLCLMIAFGGFVFGWDTGTISG--FVNQTDFKRRFGQMKSDGTYYLSDVRTGLIVGIFNIGCAFGGLTLGRLGDMYGRRIGLMCVVLVYIVGIVIQIASSDKWYQYFIG-RIISGMGVGGIAVLSPTLISETAPKHIRGTCVSFYQLMITLGIFLGYCTNYGTKDY 220          
BLAST of CX295774 vs. ExPASy Swiss-Prot
Match: GTR12_DANRE (Solute carrier family 2, facilitated glucose transporter member 12 OS=Danio rerio GN=slc2a12 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 41/148 (27.70%), Postives = 79/148 (53.38%), Query Frame = 2
Query:  251 LASMTSILLGYDIGVMSGAALYIKDDFKVSDTKIEILIGILNIFSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGVGVGYAALIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSNYP 694
            +A ++ +L+GY++ ++SGA L ++D   +S  + E ++G L + + + SL  G   D  GRR+TI+                 ++  L+ GR + G+ V  +   + +Y AE++PA+ RG      E+ +  G+LLG+  ++ F+  P
Sbjct:   50 VACLSGLLMGYEMSLISGALLQLRDVLTLSCPEQEQVVGSLLLGAFLLSLGGGTILDHYGRRFTIILTALLCVLGTLLSVCVVSFWALVVGRMLVGMSVALSGTASCLYAAEVAPAAWRGRCVCVYELMVVLGMLLGFGLSWAFAGVP 197          
The following BLAST results are available for this feature:
BLAST of CX295774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
MYCT_RAT9.921e-1530.92Proton myo-inositol cotransporter OS=Rattus norveg... [more]
MYCT_MOUSE9.921e-1530.92Proton myo-inositol cotransporter OS=Mus musculus ... [more]
MYCT_HUMAN9.921e-1531.97Proton myo-inositol cotransporter OS=Homo sapiens ... [more]
MSSP3_ARATH1.692e-1431.68Monosaccharide-sensing protein 3 OS=Arabidopsis th... [more]
HXT10_YEAST2.210e-1429.27Hexose transporter HXT10 OS=Saccharomyces cerevisi... [more]
GALP_ECOLI1.871e-1328.97Galactose-proton symporter OS=Escherichia coli (st... [more]
GALP_ECOL61.871e-1328.97Galactose-proton symporter OS=Escherichia coli O6 ... [more]
YD387_YEAST3.192e-1330.28Probable metabolite transport protein YDR387C OS=S... [more]
HXT2_YEAST7.110e-1327.18High-affinity glucose transporter HXT2 OS=Saccharo... [more]
GTR12_DANRE1.213e-1227.70Solute carrier family 2, facilitated glucose trans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05075G05SK DroRLeaf1 Citrus clementina cDNA clone C05075G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295774 ID=CX295774; Name=CX295774; organism=Citrus clementina; type=EST; length=716bp
GGCTTCTTGTTTTTGTAGTAGTTTCATGGCAGCTTGAGTTTCTATCTCTT
CTTCCAACCCTAGCTTATATAATTAAACACTCGCAGTCTCTCTCTCTCGC
TCTCTGGCTAGCTAGCTTAGCAACAACATGGCTGCAGGCTTGGGAGCCAA
GAGCAACAACAATACTGACCCTCAAAACCAAAAAACTCTTGCGGATTTTG
ATCCCCAAAAGAAACCAAAAAGAAATCTGTATGCCTCCGGCGCTGCCATT
TTGGCTTCCATGACTTCAATCTTACTAGGTTATGACATTGGAGTAATGAG
TGGAGCTGCACTCTACATCAAAGACGACTTTAAAGTCAGTGACACAAAAA
TCGAGATCTTAATTGGAATCTTGAATATTTTCTCACTCATCGGCTCACTG
GCCGCCGGCAGAACCTCCGACTGGATTGGCCGCCGGTACACTATCGTGTT
AGCCGGGGCCATCTTCTTCGCCGGAGCGCTGCTCATGGGGTTTGCCACAA
ACTATGCTTTCCTCATGGGGGGTCGCTTCGTCGCCGGCGTCGGCGTCGGA
TACGCTGCATTGATCGCTCCCGTATACACAGCTGAACTCTCTCCGGCTTC
CACTCGAGGCTTTCTCACCTCATTTCCTGAGGTTTTCATTAACGGCGGGA
TATTACTTGGCTACGTCTCGAACTACGGATTCTCCAACTACCCCTCACTT
AGGCTGGCGCATGATG
back to top