CX295847

Overview
NameCX295847
Unique NameCX295847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_STRM5 (Serine hydroxymethyltransferase OS=Stenotrophomonas maltophilia (strain R551-3) GN=glyA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.268e-25
Identity = 57/115 (49.57%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 345
            I G AVA K+A  P +KAYQ+QV+ N    A TL+  GY++VSGGT+NHL+LV++  K + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+VE+D   +A
Sbjct:  269 IAGKAVAFKEALEPGFKAYQQQVVKNAQAMANTLIARGYKIVSGGTQNHLMLVDMIGKDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAVTTRGYVEQDCVDLA 383
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_PHYAS (Serine hydroxymethyltransferase OS=Phytoplasma australiense GN=glyA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.268e-25
Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 1 
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLK--NKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 369
            I   AV+ K+A + E+K YQ+QV+ N   FAQT  + GY +VS GT+NHL L+NLK  N    G ++  +LE V+I  NKNT+P D    M   GIR+GTPA+T++GF E DF K+A   D A+K
Sbjct:  266 IAAKAVSFKEAQSLEFKNYQQQVIKNAQAFAQTFQKKGYHVVSQGTDNHLFLINLKKTNPLFTGEKIANILEKVNIIVNKNTIPFDQEKPMFTSGIRLGTPAMTTKGFQEADFIKLADLIDQAIK 390
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_LAWIP (Serine hydroxymethyltransferase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=glyA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.268e-25
Identity = 65/168 (38.69%), Postives = 95/168 (56.55%), Query Frame = 1 
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 504
            I   AVAL +A+   +  YQ+QV+ N    A+ LL+ G+ LVSGGT+NHL+L++L NK+I G   EK L+   I  NKNTVP + +S  V  GIR+GTPALT+RG  E+D  KVA +                       V    + N ++++ ++  +V  +A+QFP
Sbjct:  263 IAAKAVALGEASKASFVTYQKQVILNAKTLAKQLLDAGFNLVSGGTDNHLLLIDLTNKKITGKDAEKALDQAGITVNKNTVPFETLSPFVTSGIRIGTPALTTRGLCEQDMIKVANW----------------------IVTALNNINNETQLKEINKEVTYFARQFP 408
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBM (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=glyA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.268e-25
Identity = 55/124 (44.35%), Postives = 82/124 (66.13%), Query Frame = 1 
Query:    1 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 369
            TI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  264 TIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBK (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Okra / Type B1) GN=glyA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.268e-25
Identity = 55/124 (44.35%), Postives = 82/124 (66.13%), Query Frame = 1 
Query:    1 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 369
            TI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  264 TIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBJ (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=glyA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.268e-25
Identity = 55/124 (44.35%), Postives = 82/124 (66.13%), Query Frame = 1 
Query:    1 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 369
            TI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  264 TIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBH (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.268e-25
Identity = 55/124 (44.35%), Postives = 82/124 (66.13%), Query Frame = 1 
Query:    1 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 369
            TI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  264 TIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB8 (Serine hydroxymethyltransferase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=glyA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.268e-25
Identity = 56/123 (45.53%), Postives = 81/123 (65.85%), Query Frame = 1 
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 369
            I   AV  K+A  P +K Y E V+ NC + A+ L+  G+++VSGGT+NH+ LV+L NK I G   E +L++V I  NKNTVP +  S  V  GIR+GT A+T+RGFV++D A++A     A++
Sbjct:  265 IAAKAVCFKEALDPSFKTYGENVVENCKELAEQLIARGFKIVSGGTDNHVFLVDLNNKDITGKEAEALLDSVGITVNKNTVPNETRSPFVTSGIRIGTAAITTRGFVKDDMAEIAAVISEAIE 387
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB6 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=glyA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.268e-25
Identity = 55/124 (44.35%), Postives = 82/124 (66.13%), Query Frame = 1 
Query:    1 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 369
            TI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  264 TIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387
[Close]
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB1 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.268e-25
Identity = 55/124 (44.35%), Postives = 82/124 (66.13%), Query Frame = 1 
Query:    1 TITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 369
            TI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  264 TIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387
The following BLAST results are available for this feature:
BLAST of CX295847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_STRM52.268e-2549.57Serine hydroxymethyltransferase OS=Stenotrophomona... [more]
GLYA_PHYAS2.268e-2548.00Serine hydroxymethyltransferase OS=Phytoplasma aus... [more]
GLYA_LAWIP2.268e-2538.69Serine hydroxymethyltransferase OS=Lawsonia intrac... [more]
GLYA_CLOBM2.268e-2544.35Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBK2.268e-2544.35Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBJ2.268e-2544.35Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBH2.268e-2544.35Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOB82.268e-2545.53Serine hydroxymethyltransferase OS=Clostridium bei... [more]
GLYA_CLOB62.268e-2544.35Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOB12.268e-2544.35Serine hydroxymethyltransferase OS=Clostridium bot... [more]

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Properties
Property NameValue
Genbank descriptionC05076E06SK DroRLeaf1 Citrus clementina cDNA clone C05076E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295847 ID=CX295847; Name=CX295847; organism=Citrus clementina; type=EST; length=738bp
ACAATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTA
TAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTGCACAGA
CTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
CTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAGAGTTGA
AAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTG
GGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCT
CTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTT
CTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAACTCAAG
GAACAAAGTTGAAAGATTTCGTGGCCACAACACAGTCCGCTAACTTCCAA
TCCGAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGCAAAGCAGTT
CCCCACAATTGGGTTTGAAAAGGAAACCATGAAGTACAAGAACTGAGAGA
AAAACGCCACTGTACTAGAGCAGCAGAAGCCAGCCTGTATGAGCTTTTAT
TACACAGAGGCGACGAGGGATGAAATGTAACTTATGATGATGAGCCATGT
ATCAACTATCGACCCTGTGATTTGGCGCTTTTATGATACCATAGCAGCAA
ACTTGATTTAGATCACATTAATGTATATAAGTACTCTG
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