CX295847

Overview
NameCX295847
Unique NameCX295847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA1_RALSO (Serine hydroxymethyltransferase 1 OS=Ralstonia solanacearum GN=glyA1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.268e-25
Identity = 67/168 (39.88%), Postives = 91/168 (54.17%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 504
            I G AVA K+A +P +KAYQEQV+ N    A+TL+  G  +VSG TE+H++LV+L+ K I G   EKVL   HI  NKN +P D     V  GIR+G+PA+T+RGF E +  KVA+                             + + ++ IA +R  V E  KQFP
Sbjct:  267 IAGKAVAFKEAQSPTFKAYQEQVVKNARAMAETLMARGLRIVSGRTESHVMLVDLRAKSITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGIRLGSPAMTTRGFKEGEAVKVAHL----------------------IADVLDNPHDEANIAAVRAKVAELTKQFP 412          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_CUPTR (Serine hydroxymethyltransferase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=glyA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.869e-25
Identity = 65/171 (38.01%), Postives = 93/171 (54.39%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 513
            I G AVA K+A TPE+KAYQ+QV+ N +  A+TL+  G  +VSG TE+H++LV+L+ K I G   E++L   H+  NKN +P D     V  GIR+G+PA+T+RGF EE+                   +   G  + D +     A   + IA +R  V    K+FP  G
Sbjct:  267 IAGKAVAFKEALTPEFKAYQQQVVKNAAVLAETLIARGLRIVSGRTESHVMLVDLRAKNITGKEAERILGEAHLTVNKNAIPNDPEKPFVTSGIRVGSPAMTTRGFKEEE-------------------ARIVGNLIADVLDNPHDA---ANIAAVREQVSALTKRFPVYG 415          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_HALHL (Serine hydroxymethyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=glyA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.600e-25
Identity = 63/172 (36.63%), Postives = 95/172 (55.23%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA-TTQSANFQSEIAKLRHDVEEYAKQFPTIG 513
            I G AVA K+A  P++K YQEQV++N    A+ ++E GY +VSGGT+NHL L++L  K + G   +  L   +I  NKNTVP D  S  V  G+R+GTPA+T+RGF                        E + T+L D++     +   +S + ++R +VE+  ++FP  G
Sbjct:  268 IAGKAVAFKEALEPDFKQYQEQVVANARAMARRVIERGYNVVSGGTDNHLFLMDLTPKNLTGKDADAALGRANITVNKNTVPNDPQSPFVTSGLRIGTPAITTRGF-----------------------KEAEATRLADWICDVLDNMGDESVVERVRGEVEQICREFPVYG 416          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_CLOD6 (Serine hydroxymethyltransferase OS=Clostridium difficile (strain 630) GN=glyA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.600e-25
Identity = 59/132 (44.70%), Postives = 84/132 (63.64%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSET 396
            I   AV  K+A + E+K YQ QV  N    A+ L++  ++L+SGGT+NHL+L++L NK I G   EK L+  +I ANKNT+P D + A+V  GIR+GTPA+T+RG  EED A +A   D  +    + K+ T
Sbjct:  264 IASKAVCFKEALSDEFKEYQVQVAKNAKALAEELIKRDFKLISGGTDNHLILLDLTNKNITGKAAEKRLDDAYITANKNTIPFDPNGALVTSGIRLGTPAVTTRGMKEEDMAIIAEAIDLCLTYDEESKART 395          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_ACIAC (Serine hydroxymethyltransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.600e-25
Identity = 57/110 (51.82%), Postives = 75/110 (68.18%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 330
            I   AVA K+A TPE+KAYQ+QV  N   FA+TL+E G  ++SG TE+H++LV+L+ K I G   E  L   HI  NKN++P D    MV  GIR+GTPA+T+RGF EE+
Sbjct:  266 IAAKAVAFKEALTPEFKAYQQQVAKNAKVFAETLIERGLRIISGRTESHVMLVDLRAKGITGKAAEAALGQAHITINKNSIPNDPEKPMVTSGIRVGTPAITTRGFKEEE 375          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_MYCMO (Serine hydroxymethyltransferase OS=Mycoplasma mobile GN=glyA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.620e-25
Identity = 59/170 (34.71%), Postives = 101/170 (59.41%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNK-RIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPT 507
            I G AVA  +A TP++K YQ+Q++SN   F++   ++G +++SG T+NHL  +++K+   I G    +++ +++I ANKN++P D +   +  G+RMGTPA+T+RGF E +F K+A                     + + +A + S+N +S   KL+++V E  K FPT
Sbjct:  263 IAGKAVAFGEALTPQFKKYQQQIISNAKAFSEEFKKVGTKIISGQTDNHLFTIDVKSSFNISGKEASELMHSINITANKNSIPNDTLGPKISSGVRMGTPAMTTRGFKEVEFKKLARI-------------------IIELLANSTSSNLESLKLKLKNEVLELTKAFPT 413          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_COXBU (Serine hydroxymethyltransferase OS=Coxiella burnetii GN=glyA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.126e-24
Identity = 55/117 (47.01%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 351
            I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  268 IAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_COXBR (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=glyA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.126e-24
Identity = 55/117 (47.01%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 351
            I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  268 IAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_COXBN (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=glyA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.126e-24
Identity = 55/117 (47.01%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 351
            I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  268 IAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_COXB1 (Serine hydroxymethyltransferase OS=Coxiella burnetii (strain CbuK_Q154) GN=glyA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.126e-24
Identity = 55/117 (47.01%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYF 351
            I   AVA K+A  PE+K Y +Q+L N    A+ + E GY +VSGGT+NHL LV+L +K I G   E  L   +I  NKNTVPG+  S  V  G+R+GTPA+T+RGF E++ +++A++
Sbjct:  268 IAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYTIVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPAITTRGFKEKEASQLAHW 384          
The following BLAST results are available for this feature:
BLAST of CX295847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA1_RALSO2.268e-2539.88Serine hydroxymethyltransferase 1 OS=Ralstonia sol... [more]
GLYA_CUPTR3.869e-2538.01Serine hydroxymethyltransferase OS=Cupriavidus tai... [more]
GLYA_HALHL6.600e-2536.63Serine hydroxymethyltransferase OS=Halorhodospira ... [more]
GLYA_CLOD66.600e-2544.70Serine hydroxymethyltransferase OS=Clostridium dif... [more]
GLYA_ACIAC6.600e-2551.82Serine hydroxymethyltransferase OS=Acidovorax aven... [more]
GLYA_MYCMO8.620e-2534.71Serine hydroxymethyltransferase OS=Mycoplasma mobi... [more]
GLYA_COXBU1.126e-2447.01Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_COXBR1.126e-2447.01Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_COXBN1.126e-2447.01Serine hydroxymethyltransferase OS=Coxiella burnet... [more]
GLYA_COXB11.126e-2447.01Serine hydroxymethyltransferase OS=Coxiella burnet... [more]

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Properties
Property NameValue
Genbank descriptionC05076E06SK DroRLeaf1 Citrus clementina cDNA clone C05076E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295847 ID=CX295847; Name=CX295847; organism=Citrus clementina; type=EST; length=738bp
ACAATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTA
TAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTGCACAGA
CTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
CTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAGAGTTGA
AAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTG
GGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCT
CTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTT
CTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAACTCAAG
GAACAAAGTTGAAAGATTTCGTGGCCACAACACAGTCCGCTAACTTCCAA
TCCGAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGCAAAGCAGTT
CCCCACAATTGGGTTTGAAAAGGAAACCATGAAGTACAAGAACTGAGAGA
AAAACGCCACTGTACTAGAGCAGCAGAAGCCAGCCTGTATGAGCTTTTAT
TACACAGAGGCGACGAGGGATGAAATGTAACTTATGATGATGAGCCATGT
ATCAACTATCGACCCTGTGATTTGGCGCTTTTATGATACCATAGCAGCAA
ACTTGATTTAGATCACATTAATGTATATAAGTACTCTG
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