CX295847

Overview
NameCX295847
Unique NameCX295847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_XYLF2 (Serine hydroxymethyltransferase OS=Xylella fastidiosa (strain M23) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.297e-24
Identity = 62/144 (43.06%), Postives = 84/144 (58.33%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF--------DAAVKLAVKIKSETQGTK 408
            I   AVA K+A  P +K YQ+QV+ N    A TL+  GY++VSGGTENHL+LV++  + + G   E  L  VHI  NKN VP D  S  V  G+R+GTPA+T+RG+ E+D   +A++         D  V  AV+ K   Q  K
Sbjct:  269 IAAKAVAFKEALEPAFKVYQQQVVKNAKAMAGTLMLRGYKIVSGGTENHLMLVDMIGRDVSGKDAEGALGQVHITVNKNAVPDDPRSPFVTSGLRLGTPAVTTRGYQEQDCVDLAHWIADVLDAPADVTVIAAVREKVAAQCKK 412          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_SHEAM (Serine hydroxymethyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.297e-24
Identity = 62/171 (36.26%), Postives = 92/171 (53.80%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 513
            I G AVA K+A  PE+K YQ+QV++N     +  LE GY++VSGGT+NHL+LV+L  + + G   +  L A +I  NKN+VP D  S  +  GIR+GTPA+T RGF E +  ++ ++                            +A  +S IA+++  V E   +FP  G
Sbjct:  269 IAGKAVAFKEALEPEFKVYQQQVVTNAKAMVEVFLERGYKIVSGGTDNHLMLVDLIGRDLTGKEADAALGAANITVNKNSVPNDPRSPFITSGIRIGTPAITRRGFKEAEARELTHW----------------------ICDVLDNAKDESVIARVKGQVLELCARFPVYG 417          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_ORITI (Serine hydroxymethyltransferase OS=Orientia tsutsugamushi (strain Ikeda) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.297e-24
Identity = 65/169 (38.46%), Postives = 91/169 (53.85%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA-YFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFP 504
            I   A+A  +A  P+YK Y  QV+ N    A+ L + GY +++GGT+NH++LV+L+ K I G   E +L+A  I  NK  +P D  S  +  GIR+GTPA T+RGF E DF  V  Y  D    +A+ IKS     K +D   T    +  S I   +  V+E    FP
Sbjct:  258 IAAKAIAFSEALMPQYKEYINQVMLNAKVLAKLLQDRGYNILTGGTDNHMLLVDLRGKNITGQEAEYLLDAAGITCNKQVMPFDTTSPTITSGIRLGTPACTTRGFKENDFITVGKYIADILDNIAI-IKS---AKKNEDITITEIENSLDSVITHTKQHVQELCNSFP 422          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_ACIRA (Serine hydroxymethyltransferase OS=Acinetobacter radioresistens GN=glyA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.297e-24
Identity = 62/139 (44.60%), Postives = 83/139 (59.71%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFF--------DAAVKLAVKIKSE 393
            +   A+  K+A  PEYKAYQ+QV+ N    A+ L+E GY++VSGGT+NHL L++L  + I G   +  L A HI  NKN+VP D  S  V  GIR+GTPA+T+RGF E +   +A +         D AV   VK K E
Sbjct:  268 VAAKAICFKEAMAPEYKAYQQQVVKNAQAMAEVLIERGYDVVSGGTKNHLFLLSLIKQDITGKDADAWLGAAHITVNKNSVPNDPRSPFVTSGIRIGTPAVTTRGFGEAEVRDLASWIADILDSKGDEAVINTVKAKVE 406          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA2_BURS3 (Serine hydroxymethyltransferase 2 OS=Burkholderia sp. (strain 383) GN=glyA2 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.297e-24
Identity = 65/171 (38.01%), Postives = 95/171 (55.56%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIG 513
            I G AVA K+A +PE+KAYQE+V+ N    A+TL++ G  +VSG TE+H++LV+L+ K I G   E  L A HI  NKN +P D     V  G+R+G+PA+T+RGF               VK     ++E  G  + D +   + A   + + ++R  V E  K+FP  G
Sbjct:  267 IAGKAVAFKEALSPEFKAYQEKVVENARVLAETLVKRGLRIVSGRTESHVMLVDLRAKNITGKAAEAALGAAHITVNKNAIPNDPEKPFVTSGVRLGSPAMTTRGF--------------GVK-----EAEIVGNLIADVLEAPEDA---ATLERVRGQVAELTKRFPVYG 415          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_SHISS (Serine hydroxymethyltransferase OS=Shigella sonnei (strain Ss046) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 345
            I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  269 IAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_SHIFL (Serine hydroxymethyltransferase OS=Shigella flexneri GN=glyA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 345
            I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  269 IAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_SHIF8 (Serine hydroxymethyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 345
            I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  269 IAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_SHIDS (Serine hydroxymethyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 345
            I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  269 IAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
BLAST of CX295847 vs. ExPASy Swiss-Prot
Match: GLYA_SHIBS (Serine hydroxymethyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=glyA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    4 ITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 345
            I G AVALK+A  PE+K YQ+QV  N     +  LE GY++VSGGT+NHL LV+L +K + G   +  L   +I  NKN+VP D  S  V  GIR+GTPA+T RGF E +  ++A
Sbjct:  269 IAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELA 383          
The following BLAST results are available for this feature:
BLAST of CX295847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_XYLF27.297e-2443.06Serine hydroxymethyltransferase OS=Xylella fastidi... [more]
GLYA_SHEAM7.297e-2436.26Serine hydroxymethyltransferase OS=Shewanella amaz... [more]
GLYA_ORITI7.297e-2438.46Serine hydroxymethyltransferase OS=Orientia tsutsu... [more]
GLYA_ACIRA7.297e-2444.60Serine hydroxymethyltransferase OS=Acinetobacter r... [more]
GLYA2_BURS37.297e-2438.01Serine hydroxymethyltransferase 2 OS=Burkholderia ... [more]
GLYA_SHISS9.530e-2448.70Serine hydroxymethyltransferase OS=Shigella sonnei... [more]
GLYA_SHIFL9.530e-2448.70Serine hydroxymethyltransferase OS=Shigella flexne... [more]
GLYA_SHIF89.530e-2448.70Serine hydroxymethyltransferase OS=Shigella flexne... [more]
GLYA_SHIDS9.530e-2448.70Serine hydroxymethyltransferase OS=Shigella dysent... [more]
GLYA_SHIBS9.530e-2448.70Serine hydroxymethyltransferase OS=Shigella boydii... [more]

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Properties
Property NameValue
Genbank descriptionC05076E06SK DroRLeaf1 Citrus clementina cDNA clone C05076E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295847 ID=CX295847; Name=CX295847; organism=Citrus clementina; type=EST; length=738bp
ACAATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTACTCCAGAGTA
TAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAATTTGCACAGA
CTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
CTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGATGGTTCCAGAGTTGA
AAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACACTGTTCCTG
GGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGAACTCCGGCT
CTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCATATTT
CTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTGAAACTCAAG
GAACAAAGTTGAAAGATTTCGTGGCCACAACACAGTCCGCTAACTTCCAA
TCCGAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGCAAAGCAGTT
CCCCACAATTGGGTTTGAAAAGGAAACCATGAAGTACAAGAACTGAGAGA
AAAACGCCACTGTACTAGAGCAGCAGAAGCCAGCCTGTATGAGCTTTTAT
TACACAGAGGCGACGAGGGATGAAATGTAACTTATGATGATGAGCCATGT
ATCAACTATCGACCCTGTGATTTGGCGCTTTTATGATACCATAGCAGCAA
ACTTGATTTAGATCACATTAATGTATATAAGTACTCTG
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