CX295852

Overview
NameCX295852
Unique NameCX295852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_PLAFA (Superoxide dismutase [Fe] OS=Plasmodium falciparum GN=SODB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  292 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 660
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_PLAF7 (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate 3D7) GN=SODB PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 50/123 (40.65%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  292 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 660
            Y LNAL PH+S++TL FH+ KHH  YV+ LN  I  T   + KSL D+V  S         FNNAAQ WNH F+W                  I+ DFGS               FGSGW WL
Sbjct:   10 YALNALSPHISEETLNFHYNKHHAGYVNKLNTLIKDTPFAE-KSLLDIVKESSG-----AIFNNAAQIWNHTFYWDSMGPDCGGEPHGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWL 126          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_RICTY (Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi GN=sodB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18
Identity = 48/140 (34.29%), Postives = 65/140 (46.43%), Query Frame = 1
Query:  244 KTGGRISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            +   + S  F L   PY   + +PH + +T ++H GKHH +YV NLN  +   E    K LE ++  S +K   +  FNNA+Q WNH FFW                  I +DFGS              QFGSGW W+V
Sbjct:    5 RKANQTSYPFILPDLPYAKESFKPHFTCETFDYHHGKHHNSYVQNLNNLLKDREELQKKDLEGIIKWS-SKNSEVTVFNNASQIWNHTFFWYSIKPHGGGKPSGKVFEQISQDFGSFEQFCEQFKQEALGQFGSGWVWVV 143          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_RICPR (Superoxide dismutase [Mn/Fe] OS=Rickettsia prowazekii GN=sodB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18
Identity = 47/134 (35.07%), Postives = 63/134 (47.01%), Query Frame = 1
Query:  262 SAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            S  F L   PY   + +PH +++T ++H GKHH +YV NLN  I   E    K LE+++  S    + +   NNA+Q WNH FFW                  I +DFGS              QFGSGW W+V
Sbjct:   11 SYPFILPDLPYDKESFKPHFTRETFDYHHGKHHNSYVQNLNNLIKDREELQKKDLEEIIEWSSQNAE-VAILNNASQIWNHTFFWYSIKPHGGGKPSGKVFEQISKDFGSFEQFCAQFKQEAVGQFGSGWTWVV 143          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 7.690e-17
Identity = 56/134 (41.79%), Postives = 64/134 (47.76%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW-XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVSK 669
            FEL   PY  +AL P+MS++TLE+H  KHH AYV N NK      L D  SLED+V  SY  G   P FNNA Q +NH  FW                   I+ D G               QFGSGWAWL  K
Sbjct:    3 FELPNLPYDYDALAPYMSRETLEYHHDKHHLAYVTNGNKLAEEAGLSD-LSLEDIVKKSY--GTNQPLFNNAGQHYNHVHFWKWMKKGGGGTSLPGKLDAAIKSDLGGYDKFRADFSAAGAGQFGSGWAWLSVK 133          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_PORGI (Superoxide dismutase [Mn/Fe] OS=Porphyromonas gingivalis GN=sodB PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 51/131 (38.93%), Postives = 67/131 (51.15%), Query Frame = 1
Query:  274 ELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVS 666
            EL   PY ++AL P +SK+T+EFH GKH + YVDNLNK I+GTE  +   L  +V  S  +G +   FNNA Q  NH+ ++                  I++ FGS             T FGSGW WL S
Sbjct:    4 ELISLPYAVDALAPVISKETVEFHHGKHLKTYVDNLNKLIIGTEF-ENADLNTIVQKS--EGGI---FNNAGQTLNHNLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLAS 128          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM_ACIAD (Superoxide dismutase [Mn] OS=Acinetobacter sp. (strain ADP1) GN=sodA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 51/139 (36.69%), Postives = 65/139 (46.76%), Query Frame = 1
Query:  265 AKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDV--VIASYNKGDLLPAFNNAAQAWNHDFFW-XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVSKP 672
            A+F+  P PY  NAL+P + + T+E H+GKHH+AYVDNLN QI      D   L  +   I+ YN        NN    +NH FFW                   I +DFGS              +FGSGWAWL+  P
Sbjct:   23 AEFKQAPLPYATNALQPAIDQQTMEIHYGKHHKAYVDNLNAQIKTYPELDKTDLIQLQKQISKYNTA----VRNNGGGHFNHTFFWESLAATNKTGQPSPALVKQITQDFGSLDAFKQKFNEAASGRFGSGWAWLIVTP 157          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM1_BACAN (Superoxide dismutase [Mn] 1 OS=Bacillus anthracis GN=sodA1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 53/139 (38.13%), Postives = 64/139 (46.04%), Query Frame = 1
Query:  265 AKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAF-----NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            AK EL   PY  +ALEPH  K+T+  H  KHH  Y+ NLN  + G  EL D KS+E++V    N  ++  A      NN     NH FFW                  IE  FGS             T+FGSGWAWLV
Sbjct:    2 AKHELPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELAD-KSVEELVA---NLNEVPEAIRTAVRNNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLV 136          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODF_BACFR (Superoxide dismutase [Fe] OS=Bacteroides fragilis GN=sodB PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 50/131 (38.17%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHD-FFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWL 660
            +E+   PY  NALEP +S+ T+++H+GKH + YV+NLN  + GTE  +GK++E  ++AS   G +   FNNA Q  NH  +F                   I+RDFGS               FGSGWAWL
Sbjct:    3 YEMPKLPYANNALEPVISQQTIDYHYGKHLQTYVNNLNSLVPGTEY-EGKTVE-AIVASAPDGAI---FNNAGQVLNHTLYFLQFAPKPAKNEPAGKLGEAIKRDFGSFENFKKEFNAASVGLFGSGWAWL 128          
BLAST of CX295852 vs. ExPASy Swiss-Prot
Match: SODM_KLEPL (Superoxide dismutase [Fe] (Fragment) OS=Klebsiella planticola GN=sodA PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 49/137 (35.77%), Postives = 59/137 (43.07%), Query Frame = 1
Query:  271 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLV 663
            +EL   PY  +ALEPH+   T E H  KHH  YV NLN  + GTE  D K + D++       D LPA       NN     NH  FW                  I+  FGS             T+FGSGWAWL+
Sbjct:    3 YELPQLPYAYDALEPHIDAKTXEIHHSKHHNTYVTNLNAAVEGTEFAD-KDINDLIAML----DALPADKQTAVRNNGGGHANHTLFWEVIAPGGSNTPVGEVAKAIDAKFGSFDAFKEEFAKAATTRFGSGWAWLI 134          
The following BLAST results are available for this feature:
BLAST of CX295852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
SODF_PLAFA5.326e-1840.65Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_PLAF75.326e-1840.65Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_RICTY6.955e-1834.29Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi G... [more]
SODF_RICPR6.955e-1835.07Superoxide dismutase [Mn/Fe] OS=Rickettsia prowaze... [more]
SODF_RHIME7.690e-1741.79Superoxide dismutase [Mn] OS=Rhizobium meliloti GN... [more]
SODF_PORGI1.713e-1638.93Superoxide dismutase [Mn/Fe] OS=Porphyromonas ging... [more]
SODM_ACIAD1.450e-1536.69Superoxide dismutase [Mn] OS=Acinetobacter sp. (st... [more]
SODM1_BACAN1.450e-1538.13Superoxide dismutase [Mn] 1 OS=Bacillus anthracis ... [more]
SODF_BACFR1.450e-1538.17Superoxide dismutase [Fe] OS=Bacteroides fragilis ... [more]
SODM_KLEPL3.231e-1535.77Superoxide dismutase [Fe] (Fragment) OS=Klebsiella... [more]

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Properties
Property NameValue
Genbank descriptionC05076E11SK DroRLeaf1 Citrus clementina cDNA clone C05076E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295852 ID=CX295852; Name=CX295852; organism=Citrus clementina; type=EST; length=692bp
ACGCGGTGCCCATTGCACTAACTTCGTAGTCCACAACACAAATCAAGAGT
CAACCCAGTTCACACACAGAGTTGTTCAGGCTTTGCTTTCATCTGCTATA
ACCAAAGCTGTAATATATAAGGCATGGCATCGGCGGCAGCAGCAGCTTCA
TCTGCTCCAACAATTTGGTTGACTGGCCAAGGACTTGGTGGAAGGAGTAC
GCGATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTG
GTGGCCGAATTTCTGCGAAATTTGAGTTGAAGCCTCCACCTTATCCACTG
AATGCTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGG
AAAGCACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAA
CTGAGCTTGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTAC
AACAAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAA
CCATGACTTCTTCTGGGAATCCATGAAACCGGGTGGTGGCGGAAAGCCGT
CTGGTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAA
TTTCTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTG
GGCCTGGCTTGTATCAAAGCCAATATAGAGCTGATGTGGCTA
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