CX295868

Overview
NameCX295868
Unique NameCX295868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295868 vs. ExPASy Swiss-Prot
Match: ARF4_XENLA (ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf4 PE=2 SV=2)

HSP 1 Score: 306.99 bits (785), Expect = 6.517e-83
Identity = 149/180 (82.78%), Postives = 162/180 (90.00%), Query Frame = 2 
Query:   47 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 586
            MGLT + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RI EA +EL +ML EDELRDAVLLVFANKQDLPNAM  +E+TDKL L +LR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEAAEELQKMLQEDELRDAVLLVFANKQDLPNAMAISEMTDKLTLQTLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
[Close]
BLAST of CX295868 vs. ExPASy Swiss-Prot
Match: ARF5_RAT (ADP-ribosylation factor 5 OS=Rattus norvegicus GN=Arf5 PE=1 SV=2)

HSP 1 Score: 304.679 bits (779), Expect = 3.235e-82
Identity = 145/180 (80.56%), Postives = 162/180 (90.00%), Query Frame = 2 
Query:   47 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 586
            MGLT + LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E+ DEL +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL  LR R WY+Q+TCAT G GLY+GLDWLS+ ++ +
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180
[Close]
BLAST of CX295868 vs. ExPASy Swiss-Prot
Match: ARF5_MOUSE (ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 PE=2 SV=2)

HSP 1 Score: 304.679 bits (779), Expect = 3.235e-82
Identity = 145/180 (80.56%), Postives = 162/180 (90.00%), Query Frame = 2 
Query:   47 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 586
            MGLT + LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E+ DEL +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL  LR R WY+Q+TCAT G GLY+GLDWLS+ ++ +
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180
[Close]
BLAST of CX295868 vs. ExPASy Swiss-Prot
Match: ARF5_HUMAN (ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 PE=1 SV=2)

HSP 1 Score: 304.679 bits (779), Expect = 3.235e-82
Identity = 145/180 (80.56%), Postives = 162/180 (90.00%), Query Frame = 2 
Query:   47 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 586
            MGLT + LFSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E+ DEL +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL  LR R WY+Q+TCAT G GLY+GLDWLS+ ++ +
Sbjct:    1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180
[Close]
BLAST of CX295868 vs. ExPASy Swiss-Prot
Match: ARF4_PONAB (ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 PE=2 SV=3)

HSP 1 Score: 303.908 bits (777), Expect = 5.517e-82
Identity = 147/180 (81.67%), Postives = 161/180 (89.44%), Query Frame = 2 
Query:   47 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 586
            MGLT + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQD+IRPLW+HYFQNTQGLIFVVDSNDR+RI E  DEL +ML  DELRDAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
[Close]
BLAST of CX295868 vs. ExPASy Swiss-Prot
Match: ARF4_HUMAN (ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 PE=1 SV=3)

HSP 1 Score: 303.908 bits (777), Expect = 5.517e-82
Identity = 147/180 (81.67%), Postives = 161/180 (89.44%), Query Frame = 2 
Query:   47 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 586
            MGLT + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQD+IRPLW+HYFQNTQGLIFVVDSNDR+RI E  DEL +ML  DELRDAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
[Close]
BLAST of CX295868 vs. ExPASy Swiss-Prot
Match: ARF5_CHICK (ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5 PE=2 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 1.229e-81
Identity = 143/180 (79.44%), Postives = 163/180 (90.56%), Query Frame = 2 
Query:   47 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 586
            MGLT + +FSR+F KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+R+ E+ +EL +ML EDELRDAVLLVFANKQD+PNAM  +E+TDKLGL +LR R WY+Q+TCAT G GLY+GLDWLS+ ++ +
Sbjct:    1 MGLTVSAIFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESAEELQKMLQEDELRDAVLLVFANKQDMPNAMVVSELTDKLGLQALRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180
[Close]
BLAST of CX295868 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 302.368 bits (773), Expect = 1.605e-81
Identity = 143/181 (79.01%), Postives = 165/181 (91.16%), Query Frame = 2 
Query:   47 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 589
            MGL  +KLFS LF  KEMRILMVGLD AGKTT+LYKLKLGE++TTIPTIGFNVETV+YKNISFTVWDVGGQD+IR LWRHY++NT+G+IFV+DSNDR RI EAR+ + RMLNEDELR+AV LVFANKQDLP AM+AAEIT+KLGLHS+R R W+IQSTCATSGEGLYEGL+WLSNN+ N++
Sbjct:    1 MGLYASKLFSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKNQS 181
[Close]
BLAST of CX295868 vs. ExPASy Swiss-Prot
Match: ARF4_RAT (ADP-ribosylation factor 4 OS=Rattus norvegicus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 2.738e-81
Identity = 147/180 (81.67%), Postives = 160/180 (88.89%), Query Frame = 2 
Query:   47 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 586
            MGLT + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RI E    L +ML EDEL+DAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
[Close]
BLAST of CX295868 vs. ExPASy Swiss-Prot
Match: ARF4_MOUSE (ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 PE=2 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 2.738e-81
Identity = 147/180 (81.67%), Postives = 160/180 (88.89%), Query Frame = 2 
Query:   47 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 586
            MGLT + LFSRLF KK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RI E    L +ML EDEL+DAVLL+FANKQDLPNAM  +E+TDKLGL SLR R WY+Q+TCAT G GLYEGLDWLSN ++ +
Sbjct:    1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
The following BLAST results are available for this feature:
BLAST of CX295868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF4_XENLA6.517e-8382.78ADP-ribosylation factor 4 OS=Xenopus laevis GN=arf... [more]
ARF5_RAT3.235e-8280.56ADP-ribosylation factor 5 OS=Rattus norvegicus GN=... [more]
ARF5_MOUSE3.235e-8280.56ADP-ribosylation factor 5 OS=Mus musculus GN=Arf5 ... [more]
ARF5_HUMAN3.235e-8280.56ADP-ribosylation factor 5 OS=Homo sapiens GN=ARF5 ... [more]
ARF4_PONAB5.517e-8281.67ADP-ribosylation factor 4 OS=Pongo abelii GN=ARF4 ... [more]
ARF4_HUMAN5.517e-8281.67ADP-ribosylation factor 4 OS=Homo sapiens GN=ARF4 ... [more]
ARF5_CHICK1.229e-8179.44ADP-ribosylation factor 5 OS=Gallus gallus GN=ARF5... [more]
ARF2_YEAST1.605e-8179.01ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF4_RAT2.738e-8181.67ADP-ribosylation factor 4 OS=Rattus norvegicus GN=... [more]
ARF4_MOUSE2.738e-8181.67ADP-ribosylation factor 4 OS=Mus musculus GN=Arf4 ... [more]

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Properties
Property NameValue
Genbank descriptionC05076G03SK DroRLeaf1 Citrus clementina cDNA clone C05076G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295868 ID=CX295868; Name=CX295868; organism=Citrus clementina; type=EST; length=717bp
GAGGCTCTCTCGCGTTCTCTGAAGATAGTGATCCCCAGCTGGAAGAATGG
GGCTGACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATG
CGAATTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTA
CAAGCTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTA
ATGTGGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGATGTT
GGTGGCCAGGACAAGATTCGTCCCTTGTGGAGGCATTATTTCCAGAACAC
TCAAGGTCTCATTTTTGTTGTGGACAGCAATGACAGAGACCGTATTGTAG
AAGCAAGGGATGAATTGCATAGGATGTTGAATGAGGATGAGCTGCGAGAT
GCAGTGTTGCTTGTATTTGCTAACAAACAGGATCTTCCAAATGCAATGAA
TGCTGCTGAGATTACTGATAAGCTTGGCCTCCACTCCCTCAGGCAGCGCC
ACTGGTACATCCAGAGCACCTGTGCAACCTCTGGTGAGGGTCTTTATGAA
GGTCTGGATTGGCTCTCCAACAACATCGCTAACAAGGCCTGAAGCTGTTA
AGATCTTTTTGCGGACTGGCAATTCTGGATGCAGGGGTGAATATTATCTA
TTTTTTTTTCTTTTTTACCCTTTTTGTTTGAGACGTTTGGGTTGTTGTGT
TGTTTTGGTCTAGGATC
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