CX296262

Overview
NameCX296262
Unique NameCX296262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y1357_ARATH (Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.956e-12
Identity = 52/137 (37.96%), Postives = 64/137 (46.72%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPID-THLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEV 413
            F  K+SDFGL++    +D TH+ST V G FG   Y+ PEY R    T K DVYSFG VL E V      N     +    NL EW         L+  ID  L        L ++ ++A  C L    K RP M EV
Sbjct:  656 FVAKMSDFGLSKAGPSMDHTHVSTAVKGSFG---YLDPEYFRRQQLTEKSDVYSFGVVLFEAVCARAVINPTLPKDQI--NLAEWALSWQKQRNLESIIDSNLRGNYSPESLEKYGEIAEKC-LADEGKNRPMMGEV 786          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y1105_ARATH (Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.956e-12
Identity = 47/145 (32.41%), Postives = 80/145 (55.17%), Query Frame = 3
Query:   15 KISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAK--APETFKGNLVEWIAQLSSTGQLQDAIDKCLV---AKGVDNE---LFQFLKVACNCVLPTIPKERPTMFEVYQFL 425
            +++DFGLA+     ++HL+T V G  G   Y+APEYA     T K DVYSFG V+LE++ G +  +++   +P TF   + +W   L   G+ ++A+++ L+     G+ N    + +FL+V   C    +   RPT+ +  + L
Sbjct:  441 RVADFGLAKQSREGESHLTTRVAGTHG---YLAPEYALYGQLTEKSDVYSFGVVILEIMCGRKALDLSTSGSPNTFL--ITDWAWSLVKAGKTEEALEQSLLREEGSGLSNPKGIMERFLQVGILCA-HVLVALRPTILDALKML 579          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: WAK2_ARATH (Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.956e-12
Identity = 48/140 (34.29%), Postives = 74/140 (52.86%), Query Frame = 3
Query:   15 KISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAI 434
            K++DFG +RL+      L+T V G    LGY+ PEY  T +   K DVYSFG VL+EL++G++     + P   K NLV   A  +   +  + ID  ++ +    E+ +  ++A  C    + +ERP M EV   L A+
Sbjct:  544 KVADFGASRLIPMDKEQLTTIVQGT---LGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKAL-CFERPHCPK-NLVSCFASATKNNRFHEIIDGQVMNEDNQREIQEAARIAAECT-RLMGEERPRMKEVAAELEAL 677          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: IKU2_ARATH (Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.956e-12
Identity = 49/151 (32.45%), Postives = 73/151 (48.34%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLS---STGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAIGERYH 449
            + P+I+DFGLA+++               G LGY+APEYA T     K DVYSFG VL+ELVTG++P            ++V W+  +S   +   +   ID  +  +  ++ L + L +A  C     P+ RP M  V   L  I   Y+
Sbjct:  826 WRPRIADFGLAKIIQADSVQRDFSAPLVKGTLGYIAPEYAYTTKVNEKSDVYSFGVVLMELVTGKKPLETDFGE---NNDIVMWVWSVSKETNREMMMKLIDTSIEDEYKEDAL-KVLTIALLCT-DKSPQARPFMKSVVSMLEKIEPSYN 971          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: CRK25_ARATH (Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.956e-12
Identity = 46/134 (34.33%), Postives = 73/134 (54.48%), Query Frame = 3
Query:   12 PKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEV 413
            PKISDFG+AR+     T  +T      G  GY++PEYA     + K DVYSFG ++LEL+TG++  N +   E   G+LV ++ +L       + +D+ +      NE+ + + +A  CV      ERP+M ++
Sbjct:  486 PKISDFGMARIFGVDQTQANT--KRIVGTYGYMSPEYAIHGKYSVKSDVYSFGVLVLELITGKK--NSSFYEEDGLGDLVTYVWKLWVENSPLELVDEAMRGNFQTNEVIRCIHIALLCVQED-SSERPSMDDI 614          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: CRK17_ARATH (Cysteine-rich receptor-like protein kinase 17 OS=Arabidopsis thaliana GN=CRK17 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 6.956e-12
Identity = 42/138 (30.43%), Postives = 75/138 (54.35%), Query Frame = 3
Query:   12 PKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFL 425
            PKI+DFG+AR+     T  +T      G  GY++PEY      + K DVYSFG ++LE+++G++ ++  +  +    NLV ++ +L     + + ID  +      +E+ +++ +   CV    P +RPTM  ++Q L
Sbjct:  498 PKIADFGMARIFGVDQTVANTA--RVVGTFGYMSPEYVTHGQFSMKSDVYSFGVLILEIISGKKNSSFYQM-DGLVNNLVTYVWKLWENKTMHELIDPFIKEDCKSDEVIRYVHIGLLCVQEN-PADRPTMSTIHQVL 631          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: WAKLL_ARATH (Putative wall-associated receptor kinase-like 13 OS=Arabidopsis thaliana GN=WAKL13 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.085e-12
Identity = 48/143 (33.57%), Postives = 71/143 (49.65%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAI 434
            +  K+SDFG +R ++   TH +T ++G    +GYV PEY  +   T K DVYSFG VL+EL+TGE+P       +   G L ++        +L + ID  +       ++     +A  C+  T  K RP M EV   L  I
Sbjct:  591 YRAKVSDFGTSRSVSIDHTHWTTVISGT---VGYVDPEYYGSSHFTEKSDVYSFGVVLVELITGEKPVITLSETQEITG-LADYFRLAMRENRLFEIIDARIRNDCKLEQVIAVANLALRCLKKT-GKTRPDMREVSTALERI 728          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.085e-12
Identity = 54/138 (39.13%), Postives = 69/138 (50.00%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPID-THLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIA-QLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEV 413
            F  K+SDFGLA+     D TH+ST V    G  GY APEY  T   T K DVYSFG VLLEL++G R  + +     +  +LV+W    L    +L   +D  L  +      F    +A  C+ P   K RP M EV
Sbjct:  231 FNAKLSDFGLAKAGPTGDNTHVSTKV---IGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELISGRRAMDNSNGGNEY--SLVDWATPYLGDKRKLFRIMDTKLGGQYPQKGAFTAANLALQCLNPD-AKLRPKMSEV 362          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: WAK1_ARATH (Wall-associated receptor kinase 1 OS=Arabidopsis thaliana GN=WAK1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.186e-11
Identity = 48/140 (34.29%), Postives = 76/140 (54.29%), Query Frame = 3
Query:   15 KISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAI 434
            K++DFG +RL+      L T V G    LGY+ PEY  T +   K DVYSFG VL+EL++G++     K P++ K +LV + A  +   +L + I   ++ +    E+ +  ++A  C    + +ERP M EV   L A+
Sbjct:  549 KVADFGASRLIPMDKEELETMVQGT---LGYLDPEYYNTGLLNEKSDVYSFGVVLMELLSGQKAL-CFKRPQSSK-HLVSYFATATKENRLDEIIGGEVMNEDNLKEIQEAARIAAECT-RLMGEERPRMKEVAAKLEAL 682          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.186e-11
Identity = 54/164 (32.93%), Postives = 80/164 (48.78%), Query Frame = 3
Query:    9 EPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWI--AQLSSTGQLQD----AIDKCLVAKGVDNEL----FQFLKVACNCVLPTIPKERPTMFEVYQFLRAIGERYHFTTEDEI 470
            EP I DFGLARL++      +T      G  GY+APE A   V   + DVYS+G VLLELVT +R  + +    T   ++V W+  A  SS   ++D     +D  LV + +D+ L     Q  ++A +C     P  RPTM +  + L  +       + D +
Sbjct:  967 EPHIGDFGLARLLDDSTVSTATVT----GTTGYIAPENAFKTVRGRESDVYSYGVVLLELVTRKRAVDKSFPEST---DIVSWVRSALSSSNNNVEDMVTTIVDPILVDELLDSSLREQVMQVTELALSCTQQD-PAMRPTMRDAVKLLEDVKHLARSCSSDSV 1122          
The following BLAST results are available for this feature:
BLAST of CX296262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
Y1357_ARATH6.956e-1237.96Probable receptor-like protein kinase At1g30570 OS... [more]
Y1105_ARATH6.956e-1232.41Probable receptor-like protein kinase At1g11050 OS... [more]
WAK2_ARATH6.956e-1234.29Wall-associated receptor kinase 2 OS=Arabidopsis t... [more]
IKU2_ARATH6.956e-1232.45Receptor-like protein kinase HAIKU2 OS=Arabidopsis... [more]
CRK25_ARATH6.956e-1234.33Cysteine-rich receptor-like protein kinase 25 OS=A... [more]
CRK17_ARATH6.956e-1230.43Cysteine-rich receptor-like protein kinase 17 OS=A... [more]
WAKLL_ARATH9.085e-1233.57Putative wall-associated receptor kinase-like 13 O... [more]
APK2A_ARATH9.085e-1239.13Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
WAK1_ARATH1.186e-1134.29Wall-associated receptor kinase 1 OS=Arabidopsis t... [more]
PEPR1_ARATH1.186e-1132.93Leucine-rich repeat receptor-like protein kinase P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05138A08SK FerrChloL1 Citrus clementina cDNA clone C05138A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296262 ID=CX296262; Name=CX296262; organism=Citrus clementina; type=EST; length=520bp
GAGGTTTTGAGCCCAAAATATCTGATTTCGGCCTTGCTAGGCTCATGAAC
CCAATTGATACTCATTTAAGTACCTTCGTGAATGGAGAGTTTGGGGATTT
GGGTTATGTTGCTCCGGAGTACGCAAGAACTCTTGTTGCCACACCGAAGG
GAGATGTTTACAGCTTTGGAACTGTGCTTCTTGAGTTGGTAACTGGTGAG
AGACCTACCAATGTGGCTAAAGCTCCTGAAACCTTTAAGGGAAATCTCGT
TGAATGGATTGCACAGCTGTCAAGTACCGGTCAACTTCAAGATGCTATTG
ATAAATGCTTGGTTGCGAAGGGCGTTGACAATGAGCTTTTTCAGTTCCTT
AAAGTTGCATGTAACTGTGTACTTCCAACCATCCCCAAGGAGAGGCCTAC
CATGTTTGAAGTATACCAGTTTCTAAGAGCTATTGGGGAGCGTTACCATT
TTACCACTGAAGACGAGATTATGCTGCCCTCAGACAGCGGTGATGCCGAT
ATTCTTGAAGAACTTATTGT
back to top