CX296262

Overview
NameCX296262
Unique NameCX296262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y5707_ARATH (Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 51/146 (34.93%), Postives = 70/146 (47.95%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPID-THLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAIGE 440
            F PK+SDFGLAR     D TH++T      G  GY APEY +T     K DVYSFG VL E++TG R   + +     +  L++W+ +  +  Q    I    +         + L    +  L    KERPTM  V + L+ I E
Sbjct:  230 FCPKLSDFGLAREGPDGDNTHVTT---ARVGTHGYAAPEYVQTGHLRLKSDVYSFGVVLYEIITGRR--TIERNKPVAERRLLDWVKEYPADSQRFSMIVDPRLRNNYPAAGARSLAKLADLCLKKNDKERPTMEIVVERLKKIIE 370          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y4265_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 55/152 (36.18%), Postives = 77/152 (50.66%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNP-----IDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKG-NLVEWIA-QLSSTGQLQDAIDKCLVAK--GVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAI 434
            FEP ++DFGLAR ++      ID    T      G  GY+APE+A     T K DVYS+G VLLE++TG+ P +    P+   G +LV+W+   L+        +D  L  +   + +E+ Q L VA  CV      ERP M +V   L  I
Sbjct:  895 FEPYLADFGLARTISGYPNTGIDLAKPTNRPPMAGSYGYMAPEHASMQRITEKSDVYSYGVVLLEVLTGKHPLD----PDLPGGAHLVKWVRDHLAEKKDPSRLLDPRLDGRTDSIMHEMLQTLAVAFLCV-SNKANERPLMKDVVAMLTEI 1041          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: PAM74_ARATH (Probable LRR receptor-like serine/threonine-protein kinase PAM74 OS=Arabidopsis thaliana GN=PAM74 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 46/140 (32.86%), Postives = 76/140 (54.29%), Query Frame = 3
Query:   15 KISDFGLARLMNPI--DTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLR 428
            K++DFGL+R   PI  +TH+ST V G     GY+ PEY +T     K DVYSFG VLLE++T +   + +++    K ++ +W+    + G +   +D  L        +++ L++A +C  P+    RP M +V   L+
Sbjct:  719 KLADFGLSRSF-PIGGETHISTVVAGT---PGYLDPEYYQTTRLGEKSDVYSFGIVLLEIITNQPVIDQSRS----KSHISQWVGFELTRGDITKIMDPNLNGDYESRSVWRVLELAMSCANPS-SVNRPNMSQVANELK 849          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: CRK15_ARATH (Cysteine-rich receptor-like protein kinase 15 OS=Arabidopsis thaliana GN=CRK15 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 43/138 (31.16%), Postives = 72/138 (52.17%), Query Frame = 3
Query:   12 PKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFL 425
            PK++DFGLAR+     T  +T  +   G  GY+APEYA     + K DVYSFG ++LE+++G++  +  +       +LV    +L S G   D +D  ++     +E+ + + +   CV    P ERP +  ++  L
Sbjct:  476 PKLADFGLARIFGMDQTQENT--SRIVGTFGYMAPEYAIHGQFSVKSDVYSFGVLVLEIISGKKNNSFYETDGAH--DLVTHAWRLWSNGTALDLVDPIIIDNCQKSEVVRCIHICLLCVQED-PAERPILSTIFMML 608          
The following BLAST results are available for this feature:
BLAST of CX296262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
Y5707_ARATH7.691e-1134.93Probable receptor-like protein kinase At5g47070 OS... [more]
Y4265_ARATH7.691e-1136.18Probable LRR receptor-like serine/threonine-protei... [more]
PAM74_ARATH7.691e-1132.86Probable LRR receptor-like serine/threonine-protei... [more]
CRK15_ARATH7.691e-1131.16Cysteine-rich receptor-like protein kinase 15 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC05138A08SK FerrChloL1 Citrus clementina cDNA clone C05138A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296262 ID=CX296262; Name=CX296262; organism=Citrus clementina; type=EST; length=520bp
GAGGTTTTGAGCCCAAAATATCTGATTTCGGCCTTGCTAGGCTCATGAAC
CCAATTGATACTCATTTAAGTACCTTCGTGAATGGAGAGTTTGGGGATTT
GGGTTATGTTGCTCCGGAGTACGCAAGAACTCTTGTTGCCACACCGAAGG
GAGATGTTTACAGCTTTGGAACTGTGCTTCTTGAGTTGGTAACTGGTGAG
AGACCTACCAATGTGGCTAAAGCTCCTGAAACCTTTAAGGGAAATCTCGT
TGAATGGATTGCACAGCTGTCAAGTACCGGTCAACTTCAAGATGCTATTG
ATAAATGCTTGGTTGCGAAGGGCGTTGACAATGAGCTTTTTCAGTTCCTT
AAAGTTGCATGTAACTGTGTACTTCCAACCATCCCCAAGGAGAGGCCTAC
CATGTTTGAAGTATACCAGTTTCTAAGAGCTATTGGGGAGCGTTACCATT
TTACCACTGAAGACGAGATTATGCTGCCCTCAGACAGCGGTGATGCCGAT
ATTCTTGAAGAACTTATTGT
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