CX296262

Overview
NameCX296262
Unique NameCX296262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 7.673e-19
Identity = 54/157 (34.39%), Postives = 92/157 (58.60%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAIG--ERYHFTTEDEI 470
            FE  + DFGLA+LMN  D+H++T V G    +G++APEY  T  ++ K DV+ +G +LLEL+TG++  ++A+        L++W+ ++    +L+  +D  L  K V+ E+ Q +++A  C   +   ERP M EV + L   G  ER+    ++E+
Sbjct:  433 FEAVVGDFGLAKLMNYNDSHVTTAVRGT---IGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLARLANDDDIMLLDWVKEVLKEKKLESLVDAELEGKYVETEVEQLIQMALLCT-QSSAMERPKMSEVVRMLEGDGLAERWEEWQKEEM 585          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.309e-18
Identity = 54/144 (37.50%), Postives = 83/144 (57.64%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAIG 437
            FE  + DFGLA+LM+  DTH++T V G    +G++APEY  T  ++ K DV+ +G +LLEL+TG+R  ++A+        L++W+  L    +L+  +D  L     + EL Q ++VA  C   + P ERP M EV + L   G
Sbjct:  441 FEAVVGDFGLAKLMDYKDTHVTTAVRGT---IGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQTNYEERELEQVIQVALLCTQGS-PMERPKMSEVVRMLEGDG 580          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.916e-18
Identity = 54/144 (37.50%), Postives = 83/144 (57.64%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAIG 437
            FE  + DFGLA+L+N  D+H++T V G    +G++APEY  T  ++ K DV+ FG +LLEL+TG R     K+    KG ++EW+ +L    ++++ +D+ L       E+ + L+VA  C    +P  RP M EV Q L   G
Sbjct:  434 FEAVVGDFGLAKLLNHEDSHVTTAVRGT---VGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGKSVSQ-KGAMLEWVRKLHKEMKVEELVDRELGTTYDRIEVGEMLQVALLCT-QFLPAHRPKMSEVVQMLEGDG 572          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.181e-17
Identity = 56/137 (40.88%), Postives = 76/137 (55.47%), Query Frame = 3
Query:   15 KISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFL 425
            KISDFGLA+L +  +TH+ST + G    +GY+APEYA     T K DVYSFG V LE+V+G+  TN  +  E F   L++W   L   G L + +D  L +   + E    L VA  C   + P  RPTM +V   +
Sbjct:  820 KISDFGLAKLNDDGNTHISTRIAGT---IGYMAPEYAMRGYLTEKADVYSFGVVALEIVSGKSNTNF-RPTEDFV-YLLDWAYVLQERGSLLELVDPTLASDYSEEEAMLMLNVALMCTNAS-PTLRPTMSQVVSLI 950          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: RCH2_ARATH (Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.379e-17
Identity = 61/170 (35.88%), Postives = 92/170 (54.12%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAI-GERYHFTTEDEIMLPSDSGDADILEE 512
            FEP I+DFGLA+L++  D  +    N   G  GY+APEY  ++  T K DVYS+G V+LE++TG++P +    PE    +LV+W+ Q   + ++ D+  +       D E+ Q L  A  CV  + P ERPTM +V   L+ I  ER  +   D ++  S      + EE
Sbjct:  931 FEPYIADFGLAKLVDEGD--IGRCSNTVAGSYGYIAPEYGYSMKITEKSDVYSYGVVVLEVLTGKQPID-PTVPEGI--HLVDWVRQNRGSLEVLDSTLRSRTEAEAD-EMMQVLGTALLCV-NSSPDERPTMKDVAAMLKEIKQEREEYAKVDLLLKKSPPPTTTMQEE 1093          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y2317_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.225e-16
Identity = 59/150 (39.33%), Postives = 77/150 (51.33%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEW----IAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAIGER 443
            FE  + DFGLA++   ID  LS  V+   G  GY+APEYA T+  T K D+YSFG VLLEL+TG+ P      P    G+L  W    I   S T ++ D     +    + N +    K+A  C   + P +RPTM EV   L   GER
Sbjct:  964 FEAHVGDFGLAKV---IDMPLSKSVSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELLTGKAPVQ----PLEQGGDLATWTRNHIRDHSLTSEILDPYLTKVEDDVILNHMITVTKIAVLCT-KSSPSDRPTMREVVLMLIESGER 1105          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.600e-16
Identity = 55/138 (39.86%), Postives = 72/138 (52.17%), Query Frame = 3
Query:   15 KISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLR 428
            KISDFGLA+L    +TH+ST + G    +GY+APEYA     T K DVYSFG V LE+V+G+  TN     E     L++W   L   G L + +D  L       E  + L +A  C  P+ P  RP M  V   L+
Sbjct:  808 KISDFGLAKLDEEENTHISTRIAGT---IGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFI--YLLDWAYVLQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLCTNPS-PTLRPPMSSVVSMLQ 939          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.600e-16
Identity = 55/137 (40.15%), Postives = 72/137 (52.55%), Query Frame = 3
Query:   15 KISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFL 425
            KISDFGLA+L +  +TH+ST + G    +GY+APEYA     T K DVYSFG V LE+V+G+  TN     E     L++W   L   G L + +D  L       E  + L +A  C  P+ P  RP M  V   L
Sbjct:  810 KISDFGLAKLNDDENTHISTRIAGT---IGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFV--YLLDWAYVLQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLCTNPS-PTLRPPMSSVVSML 940          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: RPK1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RPK1 OS=Arabidopsis thaliana GN=RPK1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.600e-16
Identity = 49/139 (35.25%), Postives = 79/139 (56.83%), Query Frame = 3
Query:   18 ISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAI 434
            +SDFGL++L+    +H++T V G FG   YVAPEYA T   + K DVYS+G VLLEL++ +R  + + +      N+V W   + S G+ ++     L   G  ++L + L +A  C + ++   RPTM +  + L+ I
Sbjct:  401 LSDFGLSKLLGTSQSHVTTGVAGTFG---YVAPEYAMTCRVSEKADVYSYGIVLLELISDKRALDPSFSSHENGFNIVSWAHMMLSQGKAKEVFTTGLWETGPPDDLVEVLHLALKCTVDSL-SIRPTMKQAVRLLKRI 535          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: WAKLI_ARATH (Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.089e-16
Identity = 60/159 (37.74%), Postives = 82/159 (51.57%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAIGE-----RYHFTTEDE 467
            +  K+SDFG +R +N   THL+T V G FG   Y+ PEY +T   T K DVYSFG VL+EL+TGE+P +V + PE  +G LV    +     ++ D +D  +       ++    K+A  C L    K+RP M EV   L  I         H   EDE
Sbjct:  558 YRAKVSDFGTSRSINVDQTHLTTLVAGTFG---YLDPEYFQTSQFTDKSDVYSFGVVLVELITGEKPFSVMR-PEENRG-LVSHFNEAMKQNRVLDIVDSRIKEGCTLEQVLAVAKLARRC-LSLKGKKRPNMREVSVELERIRSSPEDLELHIEEEDE 710          
The following BLAST results are available for this feature:
BLAST of CX296262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
SERK4_ARATH7.673e-1934.39Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
SERK1_ARATH1.309e-1837.50Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
Y2239_ARATH2.916e-1837.50Probable LRR receptor-like serine/threonine-protei... [more]
Y1765_ARATH7.181e-1740.88Probable LRR receptor-like serine/threonine-protei... [more]
RCH2_ARATH9.379e-1735.88Receptor-like protein kinase 2 OS=Arabidopsis thal... [more]
Y2317_ARATH1.225e-1639.33Probable leucine-rich repeat receptor-like protein... [more]
Y5344_ARATH1.600e-1639.86Probable LRR receptor-like serine/threonine-protei... [more]
Y5343_ARATH1.600e-1640.15Probable LRR receptor-like serine/threonine-protei... [more]
RPK1_ARATH1.600e-1635.25Probable LRR receptor-like serine/threonine-protei... [more]
WAKLI_ARATH2.089e-1637.74Wall-associated receptor kinase-like 22 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC05138A08SK FerrChloL1 Citrus clementina cDNA clone C05138A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296262 ID=CX296262; Name=CX296262; organism=Citrus clementina; type=EST; length=520bp
GAGGTTTTGAGCCCAAAATATCTGATTTCGGCCTTGCTAGGCTCATGAAC
CCAATTGATACTCATTTAAGTACCTTCGTGAATGGAGAGTTTGGGGATTT
GGGTTATGTTGCTCCGGAGTACGCAAGAACTCTTGTTGCCACACCGAAGG
GAGATGTTTACAGCTTTGGAACTGTGCTTCTTGAGTTGGTAACTGGTGAG
AGACCTACCAATGTGGCTAAAGCTCCTGAAACCTTTAAGGGAAATCTCGT
TGAATGGATTGCACAGCTGTCAAGTACCGGTCAACTTCAAGATGCTATTG
ATAAATGCTTGGTTGCGAAGGGCGTTGACAATGAGCTTTTTCAGTTCCTT
AAAGTTGCATGTAACTGTGTACTTCCAACCATCCCCAAGGAGAGGCCTAC
CATGTTTGAAGTATACCAGTTTCTAAGAGCTATTGGGGAGCGTTACCATT
TTACCACTGAAGACGAGATTATGCTGCCCTCAGACAGCGGTGATGCCGAT
ATTCTTGAAGAACTTATTGT
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