CX296262

Overview
NameCX296262
Unique NameCX296262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.729e-16
Identity = 55/138 (39.86%), Postives = 73/138 (52.90%), Query Frame = 3
Query:   12 PKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFL 425
            PKISDFGLA+L     TH+ST + G FG   Y+APEYA     T K DVYSFG V LE+V G           TF   L++W+  L     L + +D  L ++    E    +++A  C   + P ERP+M EV + L
Sbjct:  764 PKISDFGLAKLDEEDSTHISTRIAGTFG---YMAPEYAMRGHLTDKADVYSFGIVALEIVHGRSNKIERSKNNTF--YLIDWVEVLREKNNLLELVDPRLGSEYNREEAMTMIQIAIMCT-SSEPCERPSMSEVVKML 895          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.729e-16
Identity = 49/139 (35.25%), Postives = 77/139 (55.40%), Query Frame = 3
Query:   15 KISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRA 431
            K+SDFGLA+L+    ++++T V G FG   YVAPEYA T +   K D+YSFG +++E++TG  P + ++     + NLV+W+  +    + ++ +D  +        L + L VA  CV P   K RP M  +   L A
Sbjct:  295 KVSDFGLAKLLGSESSYVTTRVMGTFG---YVAPEYACTGMLNEKSDIYSFGILIMEIITGRNPVDYSRPQG--ETNLVDWLKSMVGNRRSEEVVDPKIPEPPSSKALKRVLLVALRCVDPDANK-RPKMGHIIHMLEA 427          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: RPK2_ARATH (LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.729e-16
Identity = 51/139 (36.69%), Postives = 79/139 (56.83%), Query Frame = 3
Query:   18 ISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAI 434
            +SDFGLARL+   +TH +T V G FG   YVAPEYA T   + K DVYS+G VLLEL++ ++  + +        N+V+W   L   G+ ++     L   G  ++L + L +A  C + ++   RPTM +V + L+ +
Sbjct: 1012 LSDFGLARLLGTSETHATTGVAGTFG---YVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFVSYGNGFNIVQWACMLLRQGRAKEFFTAGLWDAGPHDDLVEVLHLAVVCTVDSL-STRPTMKQVVRRLKQL 1146          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y2393_ARATH (Probable receptor-like protein kinase At2g39360 OS=Arabidopsis thaliana GN=At2g39360 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.079e-16
Identity = 57/134 (42.54%), Postives = 74/134 (55.22%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPID-THLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTM 404
            F  K++DFGL++    +D TH+ST V G FG   Y+ PEY      T K DVYSFG V+LE+V G RP      P   K NL+EW  +L   G+L+D ID  LV K    E+ ++ +V   C L     ERP M
Sbjct:  624 FMAKVADFGLSKTGPDLDQTHVSTAVKGSFG---YLDPEYLTRQQLTEKSDVYSFGVVMLEVVCG-RPVIDPSLPRE-KVNLIEWAMKLVKKGKLEDIIDPFLVGKVKLEEVKKYCEVTEKC-LSQNGIERPAM 751          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: RCH1_ARATH (LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.079e-16
Identity = 56/145 (38.62%), Postives = 84/145 (57.93%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVD--NELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAI 434
            FEP I DFGLA+L++  D   S+  N   G  GY+APEY  ++  T K DVYS+G V+LE++TG++P +    P+    ++V+W+ ++         ID+ L A+      E+ Q L VA  C+ P IP++RPTM +V   L  I
Sbjct:  932 FEPYIGDFGLAKLVDDGDFARSS--NTIAGSYGYIAPEYGYSMKITEKSDVYSYGVVVLEVLTGKQPID-PTIPDGL--HIVDWVKKIRDI----QVIDQGLQARPESEVEEMMQTLGVALLCINP-IPEDRPTMKDVAAMLSEI 1066          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: CRK42_ARATH (Cysteine-rich receptor-like protein kinase 42 OS=Arabidopsis thaliana GN=CRK42 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.079e-16
Identity = 59/143 (41.26%), Postives = 79/143 (55.24%), Query Frame = 3
Query:   12 PKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKC-----LVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFL 425
            PKI+DFGLAR      THLST   G  G LGY+APEY      T K DVYSFG ++LE+  G R    A  PET  G+L++ +  L +  +L +A+D C     L  +G + E  + L+V   C   + P  RP+M EV + L
Sbjct:  454 PKIADFGLARCFGLDKTHLST---GIAGTLGYMAPEYVVRGQLTEKADVYSFGVLVLEIACGTRIN--AFVPET--GHLLQRVWNLYTLNRLVEALDPCLKDEFLQVQGSEAEACKVLRVGLLCTQAS-PSLRPSMEEVIRML 588          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.037e-15
Identity = 47/146 (32.19%), Postives = 83/146 (56.85%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAIGER 443
            FE  + DFGLA+L++  D+H++T V G    +G++APEY  T  ++ K DV+ FG ++LEL+TG +  +     +  KG ++ W+  L +  +  + +D+ L  +  D  L + +++A  C  P  P  RP M +V + L  + E+
Sbjct:  438 FEAIVGDFGLAKLLDQRDSHVTTAVRGT---IGHIAPEYLSTGQSSEKTDVFGFGVLILELITGHKMIDQGNG-QVRKGMILSWVRTLKAEKRFAEMVDRDLKGEFDDLVLEEVVELALLCTQPH-PNLRPRMSQVLKVLEGLVEQ 578          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y5148_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g61480 OS=Arabidopsis thaliana GN=At5g61480 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.037e-15
Identity = 54/169 (31.95%), Postives = 93/169 (55.03%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGN-LVEWI-AQLSSTGQLQDAIDKCL--VAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAIGERYHFTTEDEIMLPSDSGDAD 500
            FE +++DFG+A+L+   D  +S       G  GY+APEYA TL    K D+YS+G +LLE++TG+R       PE  +GN +V+W+ ++L +   +++ +DK +      +  E+ Q L++A  C   + P +RP M +V   L+    +   T  D +++  D  D +
Sbjct:  864 FEARVADFGVAKLIQT-DESMSVVA----GSYGYIAPEYAYTLQVDKKSDIYSYGVILLEIITGKRSVE----PEFGEGNSIVDWVRSKLKTKEDVEEVLDKSMGRSCSLIREEMKQMLRIALLCTSRS-PTDRPPMRDVLLILQEAKPK-RKTVGDNVIVVGDVNDVN 1021          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y3804_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.147e-15
Identity = 55/143 (38.46%), Postives = 76/143 (53.15%), Query Frame = 3
Query:   12 PKISDFGLARLMNPIDTHLSTFVNGEFGD-LGYVAPEY-ARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAI 434
            PKISDFGL+RL+   D +  T  N  F + LGYVAPE   + L    K DVY FG ++LELVTG RP    +        L + +  +   G + + ID  +  +  ++E+   LK+A  C    IP  RPTM E+ Q L+ I
Sbjct:  868 PKISDFGLSRLLTTQDGN--TMNNNRFQNALGYVAPELECQNLRVNEKCDVYGFGVLILELVTGRRPVEYGEDSFVI---LSDHVRVMLEQGNVLECIDPVMEEQYSEDEVLPVLKLALVCT-SQIPSNRPTMAEIVQILQVI 1004          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: RKF3_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RKF3 OS=Arabidopsis thaliana GN=RKF3 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.147e-15
Identity = 54/142 (38.03%), Postives = 76/142 (53.52%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRA 431
            FE K++DFGLA+      TH+ST V G    +GYVAPEYA     T K DVYSFG VLLEL++  R   +    E    ++ +W   L   GQ  D ++  +  KG    L +++ +A  C  P +   RPTM +V + L +
Sbjct:  424 FEAKVADFGLAKFNPEGMTHMSTRVAGT---MGYVAPEYALYGQLTEKSDVYSFGVVLLELLS--RRKAIVTDEEGQPVSVADWAWSLVREGQTLDVVEDGMPEKGPPEVLEKYVLIAVLCSHPQL-HARPTMDQVVKMLES 559          
The following BLAST results are available for this feature:
BLAST of CX296262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
Y1534_ARATH2.729e-1639.86Probable LRR receptor-like serine/threonine-protei... [more]
Y1154_ARATH2.729e-1635.25Probable serine/threonine-protein kinase At1g01540... [more]
RPK2_ARATH2.729e-1636.69LRR receptor-like serine/threonine-protein kinase ... [more]
Y2393_ARATH6.079e-1642.54Probable receptor-like protein kinase At2g39360 OS... [more]
RCH1_ARATH6.079e-1638.62LRR receptor-like serine/threonine-protein kinase ... [more]
CRK42_ARATH6.079e-1641.26Cysteine-rich receptor-like protein kinase 42 OS=A... [more]
Y5457_ARATH1.037e-1532.19Probable LRR receptor-like serine/threonine-protei... [more]
Y5148_ARATH1.037e-1531.95Probable leucine-rich repeat receptor-like protein... [more]
Y3804_ARATH5.147e-1538.46Probably inactive leucine-rich repeat receptor-lik... [more]
RKF3_ARATH5.147e-1538.03Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC05138A08SK FerrChloL1 Citrus clementina cDNA clone C05138A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296262 ID=CX296262; Name=CX296262; organism=Citrus clementina; type=EST; length=520bp
GAGGTTTTGAGCCCAAAATATCTGATTTCGGCCTTGCTAGGCTCATGAAC
CCAATTGATACTCATTTAAGTACCTTCGTGAATGGAGAGTTTGGGGATTT
GGGTTATGTTGCTCCGGAGTACGCAAGAACTCTTGTTGCCACACCGAAGG
GAGATGTTTACAGCTTTGGAACTGTGCTTCTTGAGTTGGTAACTGGTGAG
AGACCTACCAATGTGGCTAAAGCTCCTGAAACCTTTAAGGGAAATCTCGT
TGAATGGATTGCACAGCTGTCAAGTACCGGTCAACTTCAAGATGCTATTG
ATAAATGCTTGGTTGCGAAGGGCGTTGACAATGAGCTTTTTCAGTTCCTT
AAAGTTGCATGTAACTGTGTACTTCCAACCATCCCCAAGGAGAGGCCTAC
CATGTTTGAAGTATACCAGTTTCTAAGAGCTATTGGGGAGCGTTACCATT
TTACCACTGAAGACGAGATTATGCTGCCCTCAGACAGCGGTGATGCCGAT
ATTCTTGAAGAACTTATTGT
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