CX296262

Overview
NameCX296262
Unique NameCX296262
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length520
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.147e-15
Identity = 56/141 (39.72%), Postives = 76/141 (53.90%), Query Frame = 3
Query:   12 PKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAI 434
            PKISDFGLARL     TH+ST V G    +GY+APEYA     T K DVYSFG ++LE+V G   +N   A ++    L+E+  +   +G L   +D+ L  +    E    +KVA  C   + P +RP M EV   L  +
Sbjct:  821 PKISDFGLARLDEEEKTHISTKVAGT---IGYMAPEYALWGYLTFKADVYSFGVLVLEIVAGITNSNFMGAGDSV--CLLEFANECVESGHLMQVVDERLRPEVDRKEAEAVIKVALVCSSAS-PTDRPLMSEVVAMLEGL 955          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.722e-15
Identity = 48/144 (33.33%), Postives = 83/144 (57.64%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAIG 437
            FE  + DFGLA+L++   T+++T V G    +G++APEY  T  ++ + DV+ +G +LLELVTG+R  + ++  E     L++ + +L    +L   +DK L  + +  E+   ++VA  C   + P++RP M EV + L   G
Sbjct:  429 FEAVVGDFGLAKLVDVRRTNVTTQVRGT---MGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLGAIVDKNLDGEYIKEEVEMMIQVALLCTQGS-PEDRPVMSEVVRMLEGEG 568          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: ACR4_ARATH (Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.779e-15
Identity = 53/158 (33.54%), Postives = 85/158 (53.80%), Query Frame = 3
Query:   15 KISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFL-RAIGERYHFTTEDEIMLPSD 485
            +++DFGL+ L+ P+D+  S       G LGY+ PEY R    T K DVYSFG +LLE+++G +  ++       +GN+VEW   L   G +   +D  L        L + + VAC CV     K+RP+M +V   L RA+ +     + ++ +LP++
Sbjct:  656 RVADFGLS-LLGPVDSG-SPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDM----HYEEGNIVEWAVPLIKAGDINALLDPVLKHPSEIEALKRIVSVACKCVRMR-GKDRPSMDKVTTALERALAQLMGNPSSEQPILPTE 806          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y5900_ARATH (Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.147e-14
Identity = 54/138 (39.13%), Postives = 72/138 (52.17%), Query Frame = 3
Query:    6 FEPKISDFGLARL--MNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEV 413
            F  K+SDFGL+R+   +   TH+ST V G FG   Y+ PEY R  V T K DVYSFG VLLE++   RP  +   P   + +L+ W+      G +   ID  L A      L +F ++A  CV      ERP M +V
Sbjct:  658 FVTKVSDFGLSRVGPTSASQTHVSTVVKGTFG---YLDPEYYRRQVLTEKSDVYSFGVVLLEVLCC-RPIRMQSVPPE-QADLIRWVKSNYRRGTVDQIIDSDLSADITSTSLEKFCEIAVRCVQDR-GMERPPMNDV 789          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y4291_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana GN=At4g29180 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.147e-14
Identity = 47/121 (38.84%), Postives = 66/121 (54.55%), Query Frame = 3
Query:    9 EPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCV 371
            E KI+DFGL+++    D  LS  V    G  GYV PEY  T     K DVYSFG VLLEL+TG+R  ++ K  +  K N+V ++      G +   +D  L      N  ++F++VA +CV
Sbjct:  717 EAKIADFGLSKVFPEDD--LSHVVTAVMGTPGYVDPEYYNTFKLNEKSDVYSFGIVLLELITGKR--SIMKTDDGEKMNVVHYVEPFLKMGDIDGVVDPRLHGDFSSNSAWKFVEVAMSCV 833          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y1743_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.147e-14
Identity = 51/140 (36.43%), Postives = 74/140 (52.86%), Query Frame = 3
Query:   15 KISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDN---ELFQFLKVACNCVLPTIPKERPTMFEVYQFL 425
            +++DFGLARL+N  D+H+ST + G    +GYVAPEY +T  AT +GDVYS+G + +EL TG R      A +  +  LVEW  ++ +           L      N   ++ + LK+   C     P+ RP M EV   L
Sbjct:  956 RVTDFGLARLLNVGDSHVSTVIAGT---IGYVAPEYGQTWQATTRGDVYSYGVLTMELATGRR------AVDGGEECLVEWARRVMTGNMTAKGSPITLSGTKPGNGAEQMTELLKIGVKCTADH-PQARPNMKEVLAML 1085          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: RPK1_IPONI (Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.147e-14
Identity = 51/143 (35.66%), Postives = 85/143 (59.44%), Query Frame = 3
Query:    9 EPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQL-SSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKE---RPTMFEVYQFL 425
            EP ISDFG+A+L++   T + +  N   G +GY+APE A T V + + DVYS+G VLLEL+T ++  + +   ET   ++V W+  + + TG++Q  +D  L+ + +D+ + + +  A +  L    KE   RPTM +V + L
Sbjct:  955 EPHISDFGIAKLLDQSATSIPS--NTVQGTIGYMAPENAFTTVKSRESDVYSYGVVLLELITRKKALDPSFNGET---DIVGWVRSVWTQTGEIQKIVDPSLLDELIDSSVMEQVTEALSLALRCAEKEVDKRPTMRDVVKQL 1092          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.147e-14
Identity = 51/144 (35.42%), Postives = 78/144 (54.17%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVD-NELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAI 434
            FE  +SDFG+A+ +    TH ST+V    G +GY+ PEYART     K D+YSFG VLLEL+TG++  +        + NL + I   +    + +A+D  +    +D   + +  ++A  C     P ERPTM EV + L ++
Sbjct:  785 FEAHLSDFGIAKSIPASKTHASTYV---LGTIGYIDPEYARTSRINEKSDIYSFGIVLLELLTGKKAVD-------NEANLHQLILSKADDNTVMEAVDPEVTVTCMDLGHIRKTFQLALLCTKRN-PLERPTMLEVSRVLLSL 917          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: Y5815_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g58150 OS=Arabidopsis thaliana GN=At5g58150 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.956e-14
Identity = 52/146 (35.62%), Postives = 76/146 (52.05%), Query Frame = 3
Query:    9 EPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAIGERY 446
            EP+++DFGL +L++        F   E  D GY  PE  R    T + DVYSFG VLLELV+G++P          +G+LV W+  L   GQ   AID  +     ++E+ + +K+   C    +P +RPTM +V   L+ I   Y
Sbjct:  658 EPRLADFGLVKLLD------EQFPGSESLD-GYTPPEQERNASPTLESDVYSFGVVLLELVSGKKP----------EGDLVNWVRGLVRQGQGLRAIDPTMQETVPEDEIAEAVKIGYLCT-ADLPWKRPTMQQVVGLLKDISPNY 785          
BLAST of CX296262 vs. ExPASy Swiss-Prot
Match: CRK3_ARATH (Cysteine-rich receptor-like protein kinase 3 OS=Arabidopsis thaliana GN=CRK3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.956e-14
Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = 3
Query:    6 FEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGTVLLELVTGERPTNVAKAPETFKGNLVEWIAQLSSTGQLQDAIDKCLVAKGVDNELFQFLKVACNCVLPTIPKERPTMFEVYQFLRAIGERYHFTTEDEIMLP 479
            F P+I+DFGLARL     TH+ST + G    LGY+APEY      T K DVYSFG +++E++TG+R  N A   +   G++++ +  L  T  +++A+D  L       E  + L++   CV      +RP M  V + ++   E  H  T+   + P
Sbjct:  460 FTPRIADFGLARLFPEDKTHISTAIAGT---LGYMAPEYVVRGKLTEKADVYSFGVLMIEVITGKR--NNAFVQDA--GSILQSVWSLYRTSNVEEAVDPILGDNFNKIEASRLLQIGLLCVQAAF-DQRPAMSVVVKMMKGSLE-IHTPTQPPFLNP 608          
The following BLAST results are available for this feature:
BLAST of CX296262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
RKF1_ARATH5.147e-1539.72Probable LRR receptor-like serine/threonine-protei... [more]
Y5129_ARATH6.722e-1533.33Probable LRR receptor-like serine/threonine-protei... [more]
ACR4_ARATH8.779e-1533.54Serine/threonine-protein kinase-like protein ACR4 ... [more]
Y5900_ARATH1.147e-1439.13Putative receptor-like protein kinase At5g39000 OS... [more]
Y4291_ARATH1.147e-1438.84Probable LRR receptor-like serine/threonine-protei... [more]
Y1743_ARATH1.147e-1436.43Probable LRR receptor-like serine/threonine-protei... [more]
RPK1_IPONI1.147e-1435.66Receptor-like protein kinase OS=Ipomoea nil GN=INR... [more]
ERL1_ARATH1.147e-1435.42LRR receptor-like serine/threonine-protein kinase ... [more]
Y5815_ARATH1.956e-1435.62Probably inactive leucine-rich repeat receptor-lik... [more]
CRK3_ARATH1.956e-1434.18Cysteine-rich receptor-like protein kinase 3 OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionC05138A08SK FerrChloL1 Citrus clementina cDNA clone C05138A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296262 ID=CX296262; Name=CX296262; organism=Citrus clementina; type=EST; length=520bp
GAGGTTTTGAGCCCAAAATATCTGATTTCGGCCTTGCTAGGCTCATGAAC
CCAATTGATACTCATTTAAGTACCTTCGTGAATGGAGAGTTTGGGGATTT
GGGTTATGTTGCTCCGGAGTACGCAAGAACTCTTGTTGCCACACCGAAGG
GAGATGTTTACAGCTTTGGAACTGTGCTTCTTGAGTTGGTAACTGGTGAG
AGACCTACCAATGTGGCTAAAGCTCCTGAAACCTTTAAGGGAAATCTCGT
TGAATGGATTGCACAGCTGTCAAGTACCGGTCAACTTCAAGATGCTATTG
ATAAATGCTTGGTTGCGAAGGGCGTTGACAATGAGCTTTTTCAGTTCCTT
AAAGTTGCATGTAACTGTGTACTTCCAACCATCCCCAAGGAGAGGCCTAC
CATGTTTGAAGTATACCAGTTTCTAAGAGCTATTGGGGAGCGTTACCATT
TTACCACTGAAGACGAGATTATGCTGCCCTCAGACAGCGGTGATGCCGAT
ATTCTTGAAGAACTTATTGT
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