CX296275
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP184_ARATH (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=2 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15 Identity = 44/129 (34.11%), Postives = 75/129 (58.14%), Query Frame = 2 Query: 188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +G+ T+ + C +L+ + G +H + L ++ I+ L+ +YA G + A ++FD+++ R + WNS+ISGY+E G +DA+ L+ +MEEEG EPD+ T +L AC+ LG +R G Sbjct: 126 SGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVS--WNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTG 252 HSP 2 Score: 76.2554 bits (186), Expect = 1.222e-13 Identity = 41/130 (31.54%), Postives = 67/130 (51.54%), Query Frame = 2 Query: 185 QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 + G T S+L C L + G L + T + + + SKL+ +Y G +D A +VF+QM + A W ++I+ Y++ G+ +A L+F+ME+ GV PD T VL AC +G + +G Sbjct: 226 EEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVA--WTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELG 353
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR52_ARATH (Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14 Identity = 44/135 (32.59%), Postives = 69/135 (51.11%), Query Frame = 2 Query: 170 LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 L+S Q G V+ T+ LLE+C ++ G LH + + +KLL +YA G I +A +VFD M R F W+++I Y+ + + L+ M ++GV PD F FP++L+ CA G + G Sbjct: 69 LDSLFQQGSKVKRSTYLKLLESCIDSGSIHLGRILHARFGL-FTEPDVFVETKLLSMYAKCGCIADARKVFDSMRERNLFT--WSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCANCGDVEAG 200
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14 Identity = 43/137 (31.39%), Postives = 77/137 (56.20%), Query Frame = 2 Query: 149 LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGL 556 L+ ++ L S + + V + F +L+ C +A E G K++ + +++ + + L ++ FG + +A VF +MS R F+ WN L+ GYA+ G +++A+ LY +M GV+PD +TFP VL+ C G+ Sbjct: 75 LEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFS--WNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGI 209
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP359_ARATH (Pentatricopeptide repeat-containing protein At4g39952, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E98 PE=2 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14 Identity = 44/121 (36.36%), Postives = 66/121 (54.55%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 T +LL C ++E G +HR I N +S+ L+ +YA G ++++ ++FD + + A WN +ISGY G+ E AIAL+ QMEE V+P TF +L AC GL+ G Sbjct: 535 TLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCGHLEKSRELFDAGNQKDAVC--WNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLSACTHAGLVEQG 653
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP280_ARATH (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14 Identity = 41/121 (33.88%), Postives = 71/121 (58.68%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 T +LL C ++ +++ G ++H L + I + L+ +YA G + +A ++FD M NR + W++LI GYA+ G E+A+ L+ +M+ G+EP+ TF VL AC+ +GL+ G Sbjct: 475 TMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVS--WSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEG 593 HSP 2 Score: 73.559 bits (179), Expect = 7.923e-13 Identity = 38/125 (30.40%), Postives = 72/125 (57.60%), Query Frame = 2 Query: 200 VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 ++ T+ SL+ C +++ G K+H I + + + +++ +L +Y G + +A +VFD M R ++ S+I+GY++ G+ +AI LY +M +E + PDQF F ++KACA + +G Sbjct: 65 IRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSY--TSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLG 187
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP319_ARATH (Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.463e-14 Identity = 40/131 (30.53%), Postives = 67/131 (51.15%), Query Frame = 2 Query: 170 LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 562 L+ +Q G+ T++S L+ C +++ G +H + N N + S L+ +YA G + EA +VFD M + + W ++I GYA G +A+ L ++ME EG E D + F +L C + L Sbjct: 474 LKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVFDSMPEKNLVS--WKAMIMGYARNGFCREALKLMYRMEAEGFEVDDYIFATILSTCGDIEL 602 HSP 2 Score: 72.7886 bits (177), Expect = 1.351e-12 Identity = 43/121 (35.54%), Postives = 64/121 (52.89%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 T S+L C + A+ G +LH I N + KN I S L+ LY G +A V Q+ +R + W ++ISG + LG +A+ +M +EGVEP+ FT+ LKACA + +G Sbjct: 387 TVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVS--WTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIG 505 HSP 3 Score: 72.0182 bits (175), Expect = 2.305e-12 Identity = 37/121 (30.58%), Postives = 68/121 (56.20%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 T S+L+ C + KA+ G ++H L+ +++ + + + L+ +YA G I + +VFD MSNR W S+I+ +A G E+AI+L+ M+ + + T +L+AC +G + +G Sbjct: 286 TVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVT--WTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLG 404
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP246_ARATH (Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14 Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 2 Query: 182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 ++ I T AS+L C Q+ +V+ G +LH L +N ++S L+ +Y+ G I A +F Q R + + ++I GY + G E AI+L+ M+E G++PD TF VL AC+ GLI G Sbjct: 513 LEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTY--TTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEG 641
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP357_ARATH (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 5.487e-14 Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 TFA+++ L +V+ G + H + L N I++ LL +YA G ++AH+ FD ++R WNS+IS YA GE + A+ + +M EG+EP+ TF VL AC+ GL+ G Sbjct: 557 TFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVC--WNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDG 675
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP229_ARATH (Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 5.487e-14 Identity = 50/149 (33.56%), Postives = 77/149 (51.68%), Query Frame = 2 Query: 134 TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN-LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFP-WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 TKL ++I++ SS N T E + LL C K++ HGIK+ LI N LR N + SKL+ L++ +D A ++FD +++ + W ++ GY+ G DA+ +Y M +EP F+ LKAC L +RVG Sbjct: 109 TKLDEAVTLIENSSSSPSNLST--PEAYTDLLHACISAKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVG 255
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14 Identity = 41/121 (33.88%), Postives = 69/121 (57.02%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 + A+ L C QL A+E G +H + +R + + L+ +YA G ++EA +VF + ++ A W +LISGYA G +AI+ + +M++ G++P+ TF VL AC+ GL+ G Sbjct: 249 SLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQA--WTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEG 367 The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bpback to top |