CX296275

Overview
NameCX296275
Unique NameCX296275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP184_ARATH (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 44/129 (34.11%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +G+     T+  +   C +L+ +  G  +H  +    L ++  I+  L+ +YA  G +  A ++FD+++ R   +  WNS+ISGY+E G  +DA+ L+ +MEEEG EPD+ T   +L AC+ LG +R G
Sbjct:  126 SGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVS--WNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTG 252          

HSP 2 Score: 76.2554 bits (186), Expect = 1.222e-13
Identity = 41/130 (31.54%), Postives = 67/130 (51.54%), Query Frame = 2
Query:  185 QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            + G      T  S+L  C  L  +  G  L  +  T  +  +  + SKL+ +Y   G +D A +VF+QM  +   A  W ++I+ Y++ G+  +A  L+F+ME+ GV PD  T   VL AC  +G + +G
Sbjct:  226 EEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVA--WTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELG 353          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR52_ARATH (Pentatricopeptide repeat-containing protein At1g19720 OS=Arabidopsis thaliana GN=DYW7 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 44/135 (32.59%), Postives = 69/135 (51.11%), Query Frame = 2
Query:  170 LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            L+S  Q G  V+  T+  LLE+C    ++  G  LH          +  + +KLL +YA  G I +A +VFD M  R  F   W+++I  Y+    + +   L+  M ++GV PD F FP++L+ CA  G +  G
Sbjct:   69 LDSLFQQGSKVKRSTYLKLLESCIDSGSIHLGRILHARFGL-FTEPDVFVETKLLSMYAKCGCIADARKVFDSMRERNLFT--WSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCANCGDVEAG 200          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 43/137 (31.39%), Postives = 77/137 (56.20%), Query Frame = 2
Query:  149 LDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQM-EEEGVEPDQFTFPRVLKACAGL 556
            L+  ++ L S  +  + V  + F +L+  C   +A E G K++ +  +++      + +  L ++  FG + +A  VF +MS R  F+  WN L+ GYA+ G +++A+ LY +M    GV+PD +TFP VL+ C G+
Sbjct:   75 LEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFS--WNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGI 209          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP359_ARATH (Pentatricopeptide repeat-containing protein At4g39952, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E98 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 44/121 (36.36%), Postives = 66/121 (54.55%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            T  +LL  C    ++E G  +HR I       N  +S+ L+ +YA  G ++++ ++FD  + + A    WN +ISGY   G+ E AIAL+ QMEE  V+P   TF  +L AC   GL+  G
Sbjct:  535 TLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCGHLEKSRELFDAGNQKDAVC--WNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLSACTHAGLVEQG 653          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP280_ARATH (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14
Identity = 41/121 (33.88%), Postives = 71/121 (58.68%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            T  +LL  C ++ +++ G ++H       L   + I + L+ +YA  G + +A ++FD M NR   +  W++LI GYA+ G  E+A+ L+ +M+  G+EP+  TF  VL AC+ +GL+  G
Sbjct:  475 TMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVS--WSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEG 593          

HSP 2 Score: 73.559 bits (179), Expect = 7.923e-13
Identity = 38/125 (30.40%), Postives = 72/125 (57.60%), Query Frame = 2
Query:  200 VQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            ++  T+ SL+  C   +++  G K+H  I  +  + +  +++ +L +Y   G + +A +VFD M  R   ++   S+I+GY++ G+  +AI LY +M +E + PDQF F  ++KACA    + +G
Sbjct:   65 IRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSY--TSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLG 187          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP319_ARATH (Pentatricopeptide repeat-containing protein At4g18520 OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.463e-14
Identity = 40/131 (30.53%), Postives = 67/131 (51.15%), Query Frame = 2
Query:  170 LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGL 562
            L+  +Q G+     T++S L+ C   +++  G  +H +   N    N  + S L+ +YA  G + EA +VFD M  +   +  W ++I GYA  G   +A+ L ++ME EG E D + F  +L  C  + L
Sbjct:  474 LKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFRVFDSMPEKNLVS--WKAMIMGYARNGFCREALKLMYRMEAEGFEVDDYIFATILSTCGDIEL 602          

HSP 2 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 43/121 (35.54%), Postives = 64/121 (52.89%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            T  S+L  C  + A+  G +LH  I  N + KN  I S L+ LY   G   +A  V  Q+ +R   +  W ++ISG + LG   +A+    +M +EGVEP+ FT+   LKACA    + +G
Sbjct:  387 TVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVS--WTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIG 505          

HSP 3 Score: 72.0182 bits (175), Expect = 2.305e-12
Identity = 37/121 (30.58%), Postives = 68/121 (56.20%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            T  S+L+ C + KA+  G ++H L+   +++ +  + + L+ +YA  G I +  +VFD MSNR      W S+I+ +A  G  E+AI+L+  M+   +  +  T   +L+AC  +G + +G
Sbjct:  286 TVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVT--WTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLG 404          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP246_ARATH (Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 2
Query:  182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            ++  I     T AS+L  C Q+ +V+ G +LH       L +N  ++S L+ +Y+  G I  A  +F Q   R +  +   ++I GY + G  E AI+L+  M+E G++PD  TF  VL AC+  GLI  G
Sbjct:  513 LEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTY--TTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEG 641          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP357_ARATH (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.487e-14
Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            TFA+++     L +V+ G + H  +    L  N  I++ LL +YA  G  ++AH+ FD  ++R      WNS+IS YA  GE + A+ +  +M  EG+EP+  TF  VL AC+  GL+  G
Sbjct:  557 TFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVC--WNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDG 675          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP229_ARATH (Pentatricopeptide repeat-containing protein At3g14330 OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.487e-14
Identity = 50/149 (33.56%), Postives = 77/149 (51.68%), Query Frame = 2
Query:  134 TKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTN-LLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFP-WNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            TKL    ++I++  SS  N  T   E +  LL  C   K++ HGIK+  LI  N  LR N  + SKL+ L++    +D A ++FD +++ +      W ++  GY+  G   DA+ +Y  M    +EP  F+    LKAC  L  +RVG
Sbjct:  109 TKLDEAVTLIENSSSSPSNLST--PEAYTDLLHACISAKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVG 255          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 41/121 (33.88%), Postives = 69/121 (57.02%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            + A+ L  C QL A+E G  +H  +    +R +  +   L+ +YA  G ++EA +VF  +  ++  A  W +LISGYA  G   +AI+ + +M++ G++P+  TF  VL AC+  GL+  G
Sbjct:  249 SLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQA--WTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEG 367          
The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
PP184_ARATH8.465e-1534.11Pentatricopeptide repeat-containing protein At2g34... [more]
PPR52_ARATH1.106e-1432.59Pentatricopeptide repeat-containing protein At1g19... [more]
PPR45_ARATH1.106e-1431.39Pentatricopeptide repeat-containing protein At1g15... [more]
PP359_ARATH1.106e-1436.36Pentatricopeptide repeat-containing protein At4g39... [more]
PP280_ARATH1.444e-1433.88Pentatricopeptide repeat-containing protein At3g53... [more]
PP319_ARATH2.463e-1430.53Pentatricopeptide repeat-containing protein At4g18... [more]
PP246_ARATH3.217e-1434.35Pentatricopeptide repeat-containing protein At3g22... [more]
PP357_ARATH5.487e-1436.36Pentatricopeptide repeat-containing protein At4g39... [more]
PP229_ARATH5.487e-1433.56Pentatricopeptide repeat-containing protein At3g14... [more]
PP449_ARATH7.166e-1433.88Pentatricopeptide repeat-containing protein At5g66... [more]

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Properties
Property NameValue
Genbank descriptionC05138C02SK FerrChloL1 Citrus clementina cDNA clone C05138C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bp
CAAAAACAAGAGAAGTAGGAAACAGAGACGACAAAAACAACAACAAATTT
CTCGAAACAGAATCACCACTTTCTCCTCTTATCCAAAATCATCCCCAACC
CCACTTCTAACTAATCAAAAAGCTTTCCCCAAAACTAAACTCCAAGCCTT
AGACTCCATCATTCAAGACCTCGAATCCTCTGTTCAAAACGGCATCACTG
TGCAAACTGAAACCTTCGCTTCTCTTCTTGAGACGTGTTACCAATTAAAA
GCCGTAGAACATGGAATTAAGCTTCATCGTTTGATACCCACAAATCTTTT
ACGCAAAAATAAGGGCATTTCGTCAAAATTGCTGAGGTTATACGCAACGT
TTGGCCTTATCGATGAAGCGCACCAAGTTTTTGATCAAATGTCTAATAGA
ACAGCGTTTGCGTTTCCTTGGAATTCGCTTATATCAGGATATGCTGAATT
GGGTGAGTATGAAGACGCCATAGCGCTTTACTTCCAAATGGAGGAAGAAG
GCGTTGAACCGGACCAGTTCACATTCCCTCGAGTGTTGAAAGCTTGTGCT
GGACTTGGGTTAATTCGGGTTGGTGA
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