CX296275
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP436_ARATH (Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 42/129 (32.56%), Postives = 64/129 (49.61%), Query Frame = 2 Query: 188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +G+ + T +LL C L ++HG ++H L + + S LL +Y G I EA +F + +T F NS+I YA G + A+ L+ QME G + D TF +L AC+ GL +G Sbjct: 282 HGLYPNSATIITLLPACTTLAYMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGKCGFISEAMILFRKTPKKTTVTF--NSMIFCYANHGLADKAVELFDQMEATGEKLDHLTFTAILTACSHAGLTDLG 408
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP428_ARATH (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 40/121 (33.06%), Postives = 64/121 (52.89%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 +FAS L C +L + H +H L+ + + N +SS L+ +YA G I + +VF + WN++I+G+A G +AI ++ +ME E V PD TF +L C+ GL+ G Sbjct: 167 SFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSI--WNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEG 285
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP355_ARATH (Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana GN=PCMP-E45 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 42/138 (30.43%), Postives = 72/138 (52.17%), Query Frame = 2 Query: 167 DLESSVQ--NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574 DL S +Q +GI S+L C L AV+HG +H I T ++ + I + ++ +YA G I+ A ++F+ + ++ F WN+L+ G A G +++ + +M + G +P+ TF L AC GL+ G Sbjct: 291 DLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFT--WNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEG 426
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11 Identity = 44/131 (33.59%), Postives = 73/131 (55.73%), Query Frame = 2 Query: 191 GITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKN----KGISSKLLRLYATFGLIDEAHQVFD--QMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 565 G+ T A+L + L A+E G ++H N L+ N + + L+ +YA G ID+A+ +F +M N TA WN+++ G A+ GE ++ + L+ QM+ G++PD+ TF VL AC+ GL+ Sbjct: 613 GVLPDEFTIATLAKASSCLTALEQGRQIH----ANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITA----WNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLV 735
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR88_ARATH (Pentatricopeptide repeat-containing protein At1g62260, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11 Identity = 36/118 (30.51%), Postives = 64/118 (54.24%), Query Frame = 2 Query: 212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLI 565 T SLL L + G+++H+++ ++ + + + L+ +Y+ G I E+ ++FD+M + WN++I GYA G +A+ L+ M+ G+ P TF VL ACA GL+ Sbjct: 411 TLTSLLSASTGLVNLRLGMQMHQIVVKTVI-PDVPVHNALITMYSRCGEIMESRRIFDEMKLKRE-VITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLV 526
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PPR60_ARATH (Pentatricopeptide repeat-containing protein At1g26900, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E54 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11 Identity = 39/125 (31.20%), Postives = 70/125 (56.00%), Query Frame = 2 Query: 206 TETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG--VEPDQFTFPRVLKACAGLGLIRVG 574 + TF LL +C +A G + L+ + + + + L+ +YA GL+++A ++F++M ++ + W ++ISGY G +A+ L+ +MEEE V P++ TF VL AC+ GL+ G Sbjct: 328 SSTFVGLLSSCAYSEAAFVGRTVADLLEEERIALDAILGTALVDMYAKVGLLEKAVEIFNRMKDKDVKS--WTAMISGYGAHGLAREAVTLFNKMEEENCKVRPNEITFLVVLNACSHGGLVMEG 450 The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 116
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bpback to top |