CX296275

Overview
NameCX296275
Unique NameCX296275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP207_ARATH (Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 43/131 (32.82%), Postives = 76/131 (58.02%), Query Frame = 2
Query:  182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            ++ GIT    T+A++L+TC  L +   G ++H  +    L+ +  I S L+ +Y+  G + ++  +F++   R      WN++I GYA  G+ E+AI L+ +M  E ++P+  TF  +L+ACA +GLI  G
Sbjct:  595 MEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVT--WNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKG 723          

HSP 2 Score: 69.3218 bits (168), Expect = 1.494e-11
Identity = 42/151 (27.81%), Postives = 72/151 (47.68%), Query Frame = 2
Query:  176 SSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRT------------------AFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            S +++ I     TF S+L+ C    ++ +G+++H  I  + +  N  +   L+ +Y+  G+I+EA ++  +   R                        WNS+ISGY    + EDA  L+ +M E G+ PD+FT+  VL  CA L    +G
Sbjct:  473 SMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLG 622          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 40/121 (33.06%), Postives = 68/121 (56.20%), Query Frame = 2
Query:  212 TFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            T+ S+L  C  L  +  G ++H+LI  ++ +KN+ ++S LL +Y+  G +  A ++FD           WNS+I+ YA  G  ++AI +Y QM + G +P   T+  +L AC+  GL+  G
Sbjct:  333 TYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKG 453          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP316_ARATH (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14
Identity = 39/131 (29.77%), Postives = 73/131 (55.73%), Query Frame = 2
Query:  182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            ++ GI   +   +S L  C +L A++ G ++H+++  + L  +    + L+ +Y   G + +A ++F+ M  +   A  WN++ISGYA+ G  + A+ L+ +M +  + PD  TF  VL AC   GL+ +G
Sbjct:  276 LEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVA--WNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIG 404          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.359e-14
Identity = 47/171 (27.49%), Postives = 90/171 (52.63%), Query Frame = 2
Query:   77 SYPKSSPTPLLTN------QKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRV 571
            SY  +  T LL+       Q+  P+  ++A+DS+         +G+   + T++ L++ C   +AV  G  + R +  N  R    + + L+ +Y  F L+++AHQ+FDQM  R   +  W ++IS Y++   ++ A+ L   M  + V P+ +T+  VL++C G+  +R+
Sbjct:   20 SYSSTDQTLLLSEFTRLCYQRDLPRA-MKAMDSL-------QSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVIS--WTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM 180          

HSP 2 Score: 68.5514 bits (166), Expect = 2.549e-11
Identity = 50/170 (29.41%), Postives = 86/170 (50.59%), Query Frame = 2
Query:   71 FSSYPKSSPTPLLTNQKAFPKTKL--QALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            F   P+ +     T   A+ K K+  +AL+ ++  L  +V+  +     T++S+L +C  +  V     LH  I    L  +  + S L+ ++A  G  ++A  VFD+M   T  A  WNS+I G+A+    + A+ L+ +M+  G   +Q T   VL+AC GL L+ +G
Sbjct:  119 FDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVY----TYSSVLRSCNGMSDVR---MLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMV--TGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP329_ARATH (Pentatricopeptide repeat-containing protein At4g20770 OS=Arabidopsis thaliana GN=PCMP-E35 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.222e-13
Identity = 43/131 (32.82%), Postives = 67/131 (51.15%), Query Frame = 2
Query:  185 QNGITVQTET-FASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            Q  +    ET FA++L +C +L ++ HG + H L+  +    +  + + L  +Y   G ID A Q FD +  +      WN +I GY   G  ++A+ LY +M   G +PD  TF  VL AC+  GL+  G
Sbjct:  511 QTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVI--WNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLVETG 639          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.222e-13
Identity = 43/135 (31.85%), Postives = 74/135 (54.81%), Query Frame = 2
Query:  170 LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            L    +  + V   TFASLL     + ++  G ++H  +    L  N+ + + L+ +Y+  G ID A +VF+ M NR   +  W S+I+G+A+ G     +  + QM EEGV+P++ T+  +L AC+ +GL+  G
Sbjct:  462 LSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVIS--WTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEG 594          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP220_ARATH (Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.222e-13
Identity = 44/129 (34.11%), Postives = 70/129 (54.26%), Query Frame = 2
Query:  188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +G+     TF ++L  C  L ++  G  +H LI       ++  S+ L+ +YA  G +  + QVFD+M  R+     WNSLI+GYA+ G  EDA+ ++  M +  + PD+ TF  VL AC+  G +  G
Sbjct:  726 DGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVV-SWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDG 853          

HSP 2 Score: 73.1738 bits (178), Expect = 1.035e-12
Identity = 44/169 (26.04%), Postives = 87/169 (51.48%), Query Frame = 2
Query:   71 FSSYPKSSPTPLLTNQKAFPKTKLQALDSIIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLH-RLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            FSS P+ S   +      + +  L+    + Q++   +  G+     TFA+++E C++ +++  G + H ++       + + +   LL +Y     + EA  +F ++S+  +    W  ++SG+++ G YE+A+  Y +M  +GV PDQ TF  VL+ C+ L  +R G
Sbjct:  587 FSSLPEWSVVSMNALIAGYSQNNLEEAVVLFQEM---LTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVL-WTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREG 751          

HSP 3 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 40/130 (30.77%), Postives = 65/130 (50.00%), Query Frame = 2
Query:  158 IIQDLESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKAC 547
            +  D++SS   G  +   TF SLL TC     +E G + H +I    L KN  + + L+ +YA  G +++A Q+F++M +R      WN++I  Y +     +A  L+ +M   G+  D       LKAC
Sbjct:  415 LFMDMKSS---GYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVT--WNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKAC 539          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP276_ARATH (Pentatricopeptide repeat-containing protein At3g49740 OS=Arabidopsis thaliana GN=PCMP-E84 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13
Identity = 49/136 (36.03%), Postives = 73/136 (53.68%), Query Frame = 2
Query:  170 LESSVQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEG-VEPDQFTFPRVLKACAGLGLIRVG 574
            LES V+  I     T ++LL  C    ++  G + H  +  +   K   I + L+ +Y+  G I  + +VF+QMS +   +  WNSLIS Y+  GE E+A+  Y  M++EG V PD  TF  VL AC+  GL+  G
Sbjct:  479 LESEVR--ILPDAYTLSTLLSICVSTSSLMLGSQTHAYVLRHGQFKETLIGNALINMYSQCGTIQNSLEVFNQMSEKDVVS--WNSLISAYSRHGEGENAVNTYKTMQDEGKVIPDAATFSAVLSACSHAGLVEEG 610          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP237_ARATH (Pentatricopeptide repeat-containing protein At3g16610 OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13
Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = 2
Query:  215 FASLLETCYQLKAVEHGIKLHR-LIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            F SLLETC + + +  G  +H+ L+  +L   +  +   L RLYA+   ++ A  VFD++ +       W+ +I  YA     E A+ LY++M   GV P ++T+P VLKACAGL  I  G
Sbjct:    2 FLSLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDG 122          

HSP 2 Score: 73.559 bits (179), Expect = 7.923e-13
Identity = 41/129 (31.78%), Postives = 65/129 (50.39%), Query Frame = 2
Query:  188 NGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            +GI     T   +L  C  L A+ HG   H     +    N  I + L+ +Y   G +D A +VFD M  R   +  WN+++ G+   G  ++A++L+  M+E GV PD+ T   +L AC+  GL+  G
Sbjct:  403 SGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVS--WNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEG 529          
BLAST of CX296275 vs. ExPASy Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13
Identity = 39/125 (31.20%), Postives = 71/125 (56.80%), Query Frame = 2
Query:  185 QNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLG 559
            ++G+ +   TF  +L+ C +  + + GI LH L+       +    + LL +Y+  G +++AH++FD++ +R+     W +L SGY   G + +AI L+ +M E GV+PD +   +VL AC  +G
Sbjct:  104 KHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVT--WTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVG 226          

HSP 2 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 37/131 (28.24%), Postives = 69/131 (52.67%), Query Frame = 2
Query:  182 VQNGITVQTETFASLLETCYQLKAVEHGIKLHRLIPTNLLRKNKGISSKLLRLYATFGLIDEAHQVFDQMSNRTAFAFPWNSLISGYAELGEYEDAIALYFQMEEEGVEPDQFTFPRVLKACAGLGLIRVG 574
            V+ G+   +     +L  C  +  ++ G  + + +    ++KN  + + L+ LYA  G +++A  VFD M  +      W+++I GYA     ++ I L+ QM +E ++PDQF+    L +CA LG + +G
Sbjct:  204 VEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVT--WSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG 332          
The following BLAST results are available for this feature:
BLAST of CX296275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
PP207_ARATH7.166e-1432.82Pentatricopeptide repeat-containing protein At3g02... [more]
PP185_ARATH7.166e-1433.06Pentatricopeptide repeat-containing protein At2g35... [more]
PP316_ARATH9.359e-1429.77Pentatricopeptide repeat-containing protein At4g16... [more]
PP147_ARATH9.359e-1427.49Pentatricopeptide repeat-containing protein At2g03... [more]
PP329_ARATH1.222e-1332.82Pentatricopeptide repeat-containing protein At4g20... [more]
PP272_ARATH1.222e-1331.85Pentatricopeptide repeat-containing protein At3g49... [more]
PP220_ARATH1.222e-1334.11Pentatricopeptide repeat-containing protein At3g09... [more]
PP276_ARATH1.596e-1336.03Pentatricopeptide repeat-containing protein At3g49... [more]
PP237_ARATH1.596e-1336.36Pentatricopeptide repeat-containing protein At3g16... [more]
PP219_ARATH1.596e-1331.20Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionC05138C02SK FerrChloL1 Citrus clementina cDNA clone C05138C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296275 ID=CX296275; Name=CX296275; organism=Citrus clementina; type=EST; length=576bp
CAAAAACAAGAGAAGTAGGAAACAGAGACGACAAAAACAACAACAAATTT
CTCGAAACAGAATCACCACTTTCTCCTCTTATCCAAAATCATCCCCAACC
CCACTTCTAACTAATCAAAAAGCTTTCCCCAAAACTAAACTCCAAGCCTT
AGACTCCATCATTCAAGACCTCGAATCCTCTGTTCAAAACGGCATCACTG
TGCAAACTGAAACCTTCGCTTCTCTTCTTGAGACGTGTTACCAATTAAAA
GCCGTAGAACATGGAATTAAGCTTCATCGTTTGATACCCACAAATCTTTT
ACGCAAAAATAAGGGCATTTCGTCAAAATTGCTGAGGTTATACGCAACGT
TTGGCCTTATCGATGAAGCGCACCAAGTTTTTGATCAAATGTCTAATAGA
ACAGCGTTTGCGTTTCCTTGGAATTCGCTTATATCAGGATATGCTGAATT
GGGTGAGTATGAAGACGCCATAGCGCTTTACTTCCAAATGGAGGAAGAAG
GCGTTGAACCGGACCAGTTCACATTCCCTCGAGTGTTGAAAGCTTGTGCT
GGACTTGGGTTAATTCGGGTTGGTGA
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