CX296279

Overview
NameCX296279
Unique NameCX296279
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length272
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296279 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.100e-25
Identity = 54/79 (68.35%), Postives = 60/79 (75.95%), Query Frame = 2
Query:   35 GVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 271
            GVCKGIFR D V + DIV+LVD  PGQSIDFFGALRARVYDDEVRKW          K LVNSKE  PTF+QP+MT++K
Sbjct:  318 GVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDK 396          
BLAST of CX296279 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.355e-25
Identity = 52/79 (65.82%), Postives = 61/79 (77.22%), Query Frame = 2
Query:   35 GVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 271
            GVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVRKW            L+NS +  PTFEQP+MT+EK
Sbjct:  318 GVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEK 396          
BLAST of CX296279 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.658e-24
Identity = 54/79 (68.35%), Postives = 58/79 (73.42%), Query Frame = 2
Query:   35 GVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 271
            GVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK+          K LVNS+E  P FEQP MT EK
Sbjct:  314 GVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEK 392          
BLAST of CX296279 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.658e-24
Identity = 52/79 (65.82%), Postives = 59/79 (74.68%), Query Frame = 2
Query:   35 GVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 271
            GVC GIFR DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVRKW            L+NS +  PTFEQP+MT+EK
Sbjct:  318 GVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEK 396          
BLAST of CX296279 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.549e-23
Identity = 50/79 (63.29%), Postives = 56/79 (70.89%), Query Frame = 2
Query:   35 GVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 271
            GVC GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVRKW          K LVNSK+  P FEQP MT++K
Sbjct:  312 GVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQK 390          
BLAST of CX296279 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.322e-15
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 2
Query:   35 GVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTME 268
            GVC GIF+ DNV   ++  LVDTFPGQSIDFFGALRARVYDD VR+W          + LVN+++       P+++M+
Sbjct:  287 GVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKV---AMPKVSMD 361          
BLAST of CX296279 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.020e-13
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 2
Query:   35 GVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTM 265
            G+  GIF  D ++  D+ KLVD+FP QSIDFF ALR+R+YD+++R +            +VNS E  P F++P  T+
Sbjct:  187 GIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTL 263          
BLAST of CX296279 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.513e-11
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 2
Query:   35 GVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTM 265
            G+  GIF  D ++  +I +LVDTFP QSIDFF ALR+R+YD ++R +            +VNS EA P F++P  ++
Sbjct:  187 GIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSL 263          
The following BLAST results are available for this feature:
BLAST of CX296279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA_PHAVU4.100e-2568.35Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC5.355e-2565.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH2.658e-2468.35Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC2.658e-2465.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL8.549e-2363.29Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE1.322e-1551.28Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC8.020e-1342.86Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP1.513e-1142.86Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC05138C07SK FerrChloL1 Citrus clementina cDNA clone C05138C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296279 ID=CX296279; Name=CX296279; organism=Citrus clementina; type=EST; length=272bp
TTCGGCCGAGGCCTCGTGCCGAATTCGGCACGAGGGTGTGTGCAAGGGTA
TCTTCAGGAATGACAATGTGGCTGATGACGACATTGTCAAGCTTGTCGAC
ACCTTCCCCGGCCAATCCATTGATTTCTTTGGAGCCCTGAGGGCCAGAGT
CTATGATGATGAGGTGAGGAAGTGGATCTCTGGTGTTGGTGTTGGAAGCA
TTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAACATTCGAGCAA
CCAAGGATGACAATGGAGAAGC
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