CX296279
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296279 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 4.100e-25 Identity = 54/79 (68.35%), Postives = 60/79 (75.95%), Query Frame = 2 Query: 35 GVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 271 GVCKGIFR D V + DIV+LVD PGQSIDFFGALRARVYDDEVRKW K LVNSKE PTF+QP+MT++K Sbjct: 318 GVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDK 396
BLAST of CX296279 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 5.355e-25 Identity = 52/79 (65.82%), Postives = 61/79 (77.22%), Query Frame = 2 Query: 35 GVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 271 GVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVRKW L+NS + PTFEQP+MT+EK Sbjct: 318 GVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEK 396
BLAST of CX296279 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 2.658e-24 Identity = 54/79 (68.35%), Postives = 58/79 (73.42%), Query Frame = 2 Query: 35 GVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 271 GVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVRK+ K LVNS+E P FEQP MT EK Sbjct: 314 GVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEK 392
BLAST of CX296279 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 2.658e-24 Identity = 52/79 (65.82%), Postives = 59/79 (74.68%), Query Frame = 2 Query: 35 GVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 271 GVC GIFR DNV +D+VK+VD FPGQSIDFFGALRARVYDDEVRKW L+NS + PTFEQP+MT+EK Sbjct: 318 GVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEK 396
BLAST of CX296279 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2) HSP 1 Score: 105.531 bits (262), Expect = 8.549e-23 Identity = 50/79 (63.29%), Postives = 56/79 (70.89%), Query Frame = 2 Query: 35 GVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTMEK 271 GVC GIF+ D V + +VKLVD FPGQSIDFFGALRARVY DEVRKW K LVNSK+ P FEQP MT++K Sbjct: 312 GVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQK 390
BLAST of CX296279 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.322e-15 Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 2 Query: 35 GVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTME 268 GVC GIF+ DNV ++ LVDTFPGQSIDFFGALRARVYDD VR+W + LVN+++ P+++M+ Sbjct: 287 GVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKV---AMPKVSMD 361
BLAST of CX296279 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.020e-13 Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 2 Query: 35 GVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTM 265 G+ GIF D ++ D+ KLVD+FP QSIDFF ALR+R+YD+++R + +VNS E P F++P T+ Sbjct: 187 GIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTL 263
BLAST of CX296279 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.513e-11 Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 2 Query: 35 GVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWXXXXXXXXXXKSLVNSKEAAPTFEQPRMTM 265 G+ GIF D ++ +I +LVDTFP QSIDFF ALR+R+YD ++R + +VNS EA P F++P ++ Sbjct: 187 GIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSL 263 The following BLAST results are available for this feature:
BLAST of CX296279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296279 ID=CX296279; Name=CX296279; organism=Citrus clementina; type=EST; length=272bpback to top |