CX296287

Overview
NameCX296287
Unique NameCX296287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK2_ORYSJ (S-adenosylmethionine synthetase 2 OS=Oryza sativa subsp. japonica GN=SAM2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.306e-19
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = -2
Query:  340 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 483
            FRPGM+ INLDLKRGGN RF+KTAAYGHFGREDPDFTWEVVKPLKYEK
Sbjct:  345 FRPGMMTINLDLKRGGN-RFIKTAAYGHFGREDPDFTWEVVKPLKYEK 391          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK_DENCR (S-adenosylmethionine synthetase OS=Dendrobium crumenatum GN=SAMS PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.706e-19
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = -2
Query:  337 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKP 483
            FRPGMI INLDLKRGGN RF+KTAAYGHFGR+DPDFTWEVVKPLK++KP
Sbjct:  346 FRPGMITINLDLKRGGN-RFIKTAAYGHFGRDDPDFTWEVVKPLKWDKP 393          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK3_PICSI (S-adenosylmethionine synthetase 3 OS=Picea sitchensis GN=METK3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.706e-19
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = -2
Query:  340 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 483
            FRPGMI INLDLKRGGN RF KTAAYGHFGR+DPDFTWE+VKPLK EK
Sbjct:  343 FRPGMITINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEIVKPLKQEK 390          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK_PINBN (S-adenosylmethionine synthetase OS=Pinus banksiana GN=METK PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.800e-19
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = -2
Query:  334 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 483
            FRPGMI+INLDLKRGGN R  KTAAYGHFGR+DPDFTWE VKPLK+EK Q
Sbjct:  343 FRPGMISINLDLKRGGNGRSQKTAAYGHFGRDDPDFTWETVKPLKWEKAQ 392          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK4_ARATH (S-adenosylmethionine synthetase 4 OS=Arabidopsis thaliana GN=METK4 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.800e-19
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = -2
Query:  334 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 483
            FRPGMI+INLDLKRGGN RFLKTAAYGHFGR+D DFTWEVVKPLK  K Q
Sbjct:  343 FRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKSNKVQ 392          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK2_BRAJU (S-adenosylmethionine synthetase 2 OS=Brassica juncea GN=MSAMS2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.800e-19
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = -2
Query:  334 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 483
            FRPGMI+INLDLKRGGN RFLKTAAYGHFGR+D DFTWEVVKPLK  K Q
Sbjct:  343 FRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDADFTWEVVKPLKSNKVQ 392          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK1_BETVU (S-adenosylmethionine synthetase 1 OS=Beta vulgaris GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.963e-19
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = -2
Query:  334 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQ 483
            FRPGMIAINLDL +GG SR+LKTAAYGHFGR+DPDFTWEVVKPLK++KPQ
Sbjct:  347 FRPGMIAINLDLLKGG-SRYLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQ 395          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK_WHEAT (S-adenosylmethionine synthetase OS=Triticum aestivum GN=SAMS PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.481e-19
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = -2
Query:  337 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKP 483
            FRPGMI INLDLKRGG  R+LKTAAYGHFGRE  DFTWEVVKPLK+EKP
Sbjct:  346 FRPGMIIINLDLKRGGKGRYLKTAAYGHFGREGADFTWEVVKPLKWEKP 394          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK_MESCR (S-adenosylmethionine synthetase OS=Mesembryanthemum crystallinum GN=METK PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.465e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = -2
Query:  331 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKPQE 483
            FRPGMIA NLDL RGGN R+LKTAAYGHFGR+D DFTWEVVKPLK+EKPQE
Sbjct:  343 FRPGMIANNLDLLRGGN-RYLKTAAYGHFGRDDADFTWEVVKPLKWEKPQE 392          
BLAST of CX296287 vs. ExPASy Swiss-Prot
Match: METK1_PICSI (S-adenosylmethionine synthetase 1 OS=Picea sitchensis GN=METK1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.465e-19
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = -2
Query:  340 FRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 483
            FRPGMI+INLDLKRGGN RF KTAAYGHFGREDPDFTWE VK LK+EK
Sbjct:  345 FRPGMISINLDLKRGGNMRFQKTAAYGHFGREDPDFTWETVKVLKWEK 392          
The following BLAST results are available for this feature:
BLAST of CX296287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
METK2_ORYSJ1.306e-1991.67S-adenosylmethionine synthetase 2 OS=Oryza sativa ... [more]
METK_DENCR1.706e-1987.76S-adenosylmethionine synthetase OS=Dendrobium crum... [more]
METK3_PICSI1.706e-1987.50S-adenosylmethionine synthetase 3 OS=Picea sitchen... [more]
METK_PINBN3.800e-1984.00S-adenosylmethionine synthetase OS=Pinus banksiana... [more]
METK4_ARATH3.800e-1986.00S-adenosylmethionine synthetase 4 OS=Arabidopsis t... [more]
METK2_BRAJU3.800e-1986.00S-adenosylmethionine synthetase 2 OS=Brassica junc... [more]
METK1_BETVU4.963e-1986.00S-adenosylmethionine synthetase 1 OS=Beta vulgaris... [more]
METK_WHEAT6.481e-1985.71S-adenosylmethionine synthetase OS=Triticum aestiv... [more]
METK_MESCR8.465e-1986.27S-adenosylmethionine synthetase OS=Mesembryanthemu... [more]
METK1_PICSI8.465e-1987.50S-adenosylmethionine synthetase 1 OS=Picea sitchen... [more]

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Properties
Property NameValue
Genbank descriptionC05138D05SK FerrChloL1 Citrus clementina cDNA clone C05138D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296287 ID=CX296287; Name=CX296287; organism=Citrus clementina; type=EST; length=484bp
GAGGGATGAATCTCATAATTTGATTATGAAGAAAAAATGCATTAATAGTA
CATTAACAAATAACAATGTTTCTCCACAAACGAGCTCTTCTTCCATCTCT
ATTTCTCTTCCTAGCATATCTCATACAGGCAACTTCTCTGTAATTCTTTC
ATCGACTATGACTCAATTAGACCACATATATCTTTCTATTATGGCAAAGA
TAATACAAATTTATTTATAAAAAAAAAGGCCAAGACCAAGAGAGAAAAAA
GACAGAATCTGACAGGCAGACGAAAGAACAAGTAAATTATTGAGTTCAAA
CAAAGAATGAAACTGCATACTTAAATTCTACTCTTGGGGTTTCTCATACT
TGAGGGGCTTCACCACCTCCCATGTGAAGTCAGGATCCTCCCTTCCAAAA
TGCCCATATGCAGCAGTCTTCAAAAACCTGCTATTTCCTCCCCTCTTGAG
ATCCAAGTTAATGGCAATCATTCCAGGCCTGAAA
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