CX296290

Overview
NameCX296290
Unique NameCX296290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXC7_ARATH (Glutaredoxin-C7 OS=Arabidopsis thaliana GN=GRXC7 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 7.563e-18
Identity = 48/114 (42.11%), Postives = 67/114 (58.77%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            + S+ SE+AV++F+   CCM H VK L  G+G +P V+E+D       +  AL  ++       GS           P VFIGGKL G +DR+MA+HI G L+P+LK+A ALWL
Sbjct:   32 IESLASESAVVIFSVSTCCMCHAVKGLFRGMGVSPAVHELDLHPYGGDIQRALIRLLGCS----GSSSPGS-----LPVVFIGGKLVGAMDRVMASHINGSLVPLLKDAGALWL 136          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXS3_ARATH (Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana GN=GRXS3 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            +  M+SE +V++F+K  CCMSH +K L L LG NP +YE+DE      +  AL  +                     P VFIGG+L GG +++M+ H+   L+P+LK A ALWL
Sbjct:    4 LQKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEISRGKEIEHALAQLGC---------------SPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXS5_ARATH (Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana GN=GRXS5 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.902e-17
Identity = 43/114 (37.72%), Postives = 63/114 (55.26%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            +  M+SE +V++F+K  CCMSH +K L L  G NP +YE+DE +    +  AL  +                     P VFIGG+L GG +++M+ H+   L+P+LK A ALWL
Sbjct:    4 LQKMISEKSVVIFSKNSCCMSHTIKTLFLDFGVNPTIYELDEINIGREIEQALAQLGC---------------SPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXS4_ARATH (Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana GN=GRXS4 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.402e-17
Identity = 42/116 (36.21%), Postives = 63/116 (54.31%), Query Frame = 3
Query:  243 DVVSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            D +  M+SE +V++F+K  CCMSH +K L +  G NP +YE+DE +    +  AL  +                     P VFIGG+L GG +++M+ H+   L+P+LK   ALWL
Sbjct:    2 DKLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLGC---------------SPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGALWL 102          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXS8_ORYSJ (Monothiol glutaredoxin-S8 OS=Oryza sativa subsp. japonica GN=GRXS8 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.426e-16
Identity = 48/116 (41.38%), Postives = 68/116 (58.62%), Query Frame = 3
Query:  243 DVVSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            D V+ + S+ AV+VF+K  C MSH V RLL  LG +  V E+DE    A + +AL  ++       G    R    V  P VFIGG+L G  DR+M+ H+ G L+P+L++A ALW+
Sbjct:    2 DRVTRLASQKAVVVFSKSSCGMSHAVTRLLRELGVDARVVELDEEPAGADMENALAGMLLAGTAANGGGRGRG---VVVPTVFIGGRLVGSTDRVMSLHVAGGLVPLLRDAGALWV 114          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXS7_ARATH (Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana GN=GRXS7 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.426e-16
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            +  M SE ++++F+K  CCMSH +K L L LG NP +YE+DE +    +  AL  +                     P VFIGG+L GG +++M+ H+   LIP+LK   ALWL
Sbjct:    4 LQKMTSEKSLVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEQALAQLGC---------------SPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRVGALWL 102          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXS8_ARATH (Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana GN=GRXS8 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.433e-16
Identity = 43/114 (37.72%), Postives = 62/114 (54.39%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            +  M+SE +V++F+   CCMSH +K L L LG NP +YE+DE +    +  AL  +                     P VFIGG+L GG +++M+ H+   LIP+LK   ALWL
Sbjct:    4 IQKMISEKSVVIFSNNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEYALAQLGC---------------SPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRFGALWL 102          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRC14_ORYSJ (Putative glutaredoxin-C14 OS=Oryza sativa subsp. japonica GN=GRXC14 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16
Identity = 47/116 (40.52%), Postives = 61/116 (52.59%), Query Frame = 3
Query:  243 DVVSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            D V  + SE AV++F    CCM H V RL   LG N  V+E+D+      +  AL  ++                    P VFIGGKL GG ++IM+ H+ GELIP+LK A ALWL
Sbjct:    2 DRVMKLASERAVVIFTLSSCCMCHTVTRLFCDLGVNALVHELDQDPRGKEMERALLKLLGRGPPV--------------PVVFIGGKLVGGTNKIMSLHLGGELIPMLKNAGALWL 103          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXC1_ORYSJ (Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN=GRXC1.1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.245e-16
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 3
Query:  243 DVVSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            D V+ + ++ AV++F+   CCM H V RL   LG NP V E+DE      +  AL  ++               +    PAVFIGG+L G  D++M+ H++G L+P+L+ A ALW+
Sbjct:    2 DRVNRLAAQRAVVIFSMSSCCMCHTVTRLFCELGVNPTVVELDEDPRGKEMEKALARLLG--------------RSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLRNAGALWV 103          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXC7_ORYSJ (Glutaredoxin-C7 OS=Oryza sativa subsp. japonica GN=GRXC7 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 43/112 (38.39%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKAL 584
            +  +V E+ V++FA+RGCCM HV++RLL  +GA+  V E+DE  +EA+   A    V                    PA+F+GG   GGLD +M  H++G L+P L+E  AL
Sbjct:   45 IGRLVRESPVVIFARRGCCMCHVMRRLLAAVGAHATVIELDEAAEEAAASAAAAAAV--------------------PALFVGGAPVGGLDGLMGLHLSGRLVPRLREVGAL 136          
The following BLAST results are available for this feature:
BLAST of CX296290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
GRXC7_ARATH7.563e-1842.11Glutaredoxin-C7 OS=Arabidopsis thaliana GN=GRXC7 P... [more]
GRXS3_ARATH2.200e-1738.60Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana ... [more]
GRXS5_ARATH4.902e-1737.72Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana ... [more]
GRXS4_ARATH6.402e-1736.21Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana ... [more]
GRXS8_ORYSJ1.426e-1641.38Monothiol glutaredoxin-S8 OS=Oryza sativa subsp. j... [more]
GRXS7_ARATH1.426e-1637.72Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana ... [more]
GRXS8_ARATH2.433e-1637.72Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana ... [more]
GRC14_ORYSJ7.078e-1640.52Putative glutaredoxin-C14 OS=Oryza sativa subsp. j... [more]
GRXC1_ORYSJ9.245e-1636.21Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN... [more]
GRXC7_ORYSJ2.060e-1538.39Glutaredoxin-C7 OS=Oryza sativa subsp. japonica GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05138D10SK FerrChloL1 Citrus clementina cDNA clone C05138D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296290 ID=CX296290; Name=CX296290; organism=Citrus clementina; type=EST; length=630bp
CCACTCACTACTTAATTACCCTTTTAATCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGTTTTTTCAAATTTTA
ATTAAATTATTCTGCAAAATAATTAATAACCATGCAGCAAGCTATCCCCT
ACAAATCGTGGCAACCCTTTGATCCCCTGAGCCATTCATCGGTATCGACG
AGCAGCAAGAGGGCCGTACGAGGGCCTAGCATTAATACCACCGATGTTGT
CAGCAGCATGGTGTCCGAGAATGCGGTGATCGTGTTCGCGAAGCGCGGGT
GCTGCATGAGCCACGTGGTGAAGCGTCTGCTCTTGGGGCTTGGTGCGAAC
CCTTGTGTTTACGAAGTTGATGAAGGGGATGACGAGGCTAGTGTTCTGGA
TGCATTGGAAATGATTGTTAATAATAATAATAATAATAATGGTAGTCACG
ATGATCGTGATCGCCAGAAGGTGCAGTTCCCAGCTGTGTTTATTGGGGGG
AAGTTGTTTGGCGGGTTGGACAGAATCATGGCTACCCATATCACAGGTGA
ACTGATTCCCGTTTTGAAAGAAGCTAAGGCCTTGTGGCTCTGACGGATCT
TTTTCTTTTTCTTCTTCTTCTTCTTCTTTT
back to top