CX296290

Overview
NameCX296290
Unique NameCX296290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRC11_ORYSJ (Putative glutaredoxin-C11 OS=Oryza sativa subsp. japonica GN=GRXC11 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 50/118 (42.37%), Postives = 63/118 (53.39%), Query Frame = 3
Query:  243 DVVSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDAL--EMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            ++V+ + SE AV+VF K GCCM   V  LL  L  +  V+E+D         D L  EM         GS     R     PAVFIGG L GG  ++MA H+ GEL+P+LK A ALWL
Sbjct:    3 EMVARLASERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDR--------DPLGKEMEKELARRLYGSSG---RGGPAVPAVFIGGSLVGGTSKVMAMHLKGELVPLLKSAGALWL 109          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXC2_ORYSJ (Putative glutaredoxin-C2 OS=Oryza sativa subsp. japonica GN=GRXC2 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.277e-14
Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            V+ + S+ AV++F    C M HVVK L   LG +  V+EVD+  +   V  AL  +V               +    PAVFIGGKL G  D++M+ H+ G+L+P+L+EA ALWL
Sbjct:    5 VARLSSQRAVVIFGASNCFMCHVVKTLFSELGVSWAVHEVDKDPNGKDVERALAGMVG--------------RTPPVPAVFIGGKLVGPTDQVMSLHLAGKLVPLLREAGALWL 104          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRC10_ORYSJ (Glutaredoxin-C10 OS=Oryza sativa subsp. japonica GN=GRXC10 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.653e-14
Identity = 46/115 (40.00%), Postives = 63/115 (54.78%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLG-LGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            V+ + SE AV+VF    C M H V  LL+G LG N  V+E+D+ D     ++  E+         G            PAVF+GG L GG +R+M+ H+ GEL+P+LK A ALWL
Sbjct:    4 VAKLASERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHELDK-DPRGRDMER-ELARRLNGGGGGGR--------ALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRC12_ORYSJ (Putative glutaredoxin-C12 OS=Oryza sativa subsp. japonica GN=GRXC12 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.130e-13
Identity = 45/116 (38.79%), Postives = 61/116 (52.59%), Query Frame = 3
Query:  243 DVVSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            ++V+ + SE AV+VF K GCCM   V  LL  L  +  V+E+D       +   +E  +       G      R     PAVFIGG L GG  ++M  H+ GEL+P+LK A ALWL
Sbjct:    3 EMVARLASERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDR----EPLGKEMERELARRLYGSGG-----RGGPAVPAVFIGGSLVGGTSKVMTVHLKGELVPMLKSAGALWL 109          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXC6_ARATH (Glutaredoxin-C6 OS=Arabidopsis thaliana GN=GRXC6 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  234 NTTDVVSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            +T   +  ++SE+ VI+F++  CCM HV+KRLL  +G  P V E+D+  + +S+  AL+          G            PAVFIG +  GGL+ ++A H++G+L+P L +  ALW+
Sbjct:   37 STEAKIRRLISEHPVIIFSRSSCCMCHVMKRLLATIGVIPTVIELDD-HEVSSLPTALQDEYSGGVSVVGPP----------PAVFIGRECVGGLESLVALHLSGQLVPKLVQVGALWV 144          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRC13_ORYSJ (Glutaredoxin-C13 OS=Oryza sativa subsp. japonica GN=GRXC13 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 45/116 (38.79%), Postives = 61/116 (52.59%), Query Frame = 3
Query:  243 DVVSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            ++V+ + SE AV+VF K GCCM   V  LL  L  +  V+E+D       +   +E  +       G      R     PAVFIGG L G   ++MA H+ GEL+P+LK A ALWL
Sbjct:    3 EMVARLASERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDR----EPLGKEMERELARRLYGSGG-----RGGPAVPAVFIGGSLVGSTSKVMAMHLKGELVPMLKNAGALWL 109          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXS1_ARATH (Putative monothiol glutaredoxin-S1 OS=Arabidopsis thaliana GN=GRXS1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.609e-13
Identity = 38/114 (33.33%), Postives = 63/114 (55.26%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            +S+++ +  V++F+K  CCMSH +K L+ G GAN  VYE+DE  +   +  AL  +                 K   PAVFIG +L GG +++M+  +  +L  +L+ A A+W+
Sbjct:    4 ISNLLEDKPVVIFSKTSCCMSHSIKSLISGYGANSTVYELDEMSNGPEIERALVELGC---------------KPTVPAVFIGQELVGGANQLMSLQVRNQLASLLRRAGAIWI 102          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRC11_ARATH (Glutaredoxin-C11 OS=Arabidopsis thaliana GN=GRXC11 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 38/114 (33.33%), Postives = 61/114 (53.51%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            +  + S+ A ++F K  CCM H +K L   LGA+P ++E+D+  +   +  AL  +        GS +         PAVF+GG+  G    I++ H+ G L  +LK+AKA+WL
Sbjct:    4 IRDLSSKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDKDPEGREMERALRAL--------GSSNP------AVPAVFVGGRYIGSAKDIISFHVDGSLKQMLKDAKAIWL 103          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRC10_ARATH (Glutaredoxin-C10 OS=Arabidopsis thaliana GN=GRXC10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 45/144 (31.25%), Postives = 71/144 (49.31%), Query Frame = 3
Query:  165 PFDPLSHSSVSTSSKRAVRGPSINTTDV--VSSMVSENAVIVFAK-RGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALW 587
            P  P + S+VS+S+           T    +  ++SE+ VI+F +   CCM HV+K+LL  +G +P V E+D+G+     ++A                         P +FIGG   GG + ++A H++G+LIP L E  ALW
Sbjct:   28 PLPPPAPSTVSSSTASTSLSFDEEETSESKIGRLISEHPVIIFTRFSSCCMCHVMKKLLSTVGVHPTVIEIDDGEIAYLAVEAA------------------------PVLFIGGTCVGGFESLVALHLSGQLIPRLVEVGALW 147          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXS9_ARATH (Monothiol glutaredoxin-S9 OS=Arabidopsis thaliana GN=GRXS9 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.784e-12
Identity = 37/113 (32.74%), Postives = 60/113 (53.10%), Query Frame = 3
Query:  243 DVVSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKA 581
            D V  M SE  V++F+K  CCMS+ V+ L   LG +P V+E+D+  +   +  AL  +                     PA+F+GGKL G  + +M+ H++G L+P++K  +A
Sbjct:    2 DKVVRMSSEKGVVIFSKSSCCMSYAVQVLFQDLGVHPTVHEIDKDPECREIEKALMRLGC---------------STPVPAIFVGGKLIGSTNEVMSLHLSGSLVPLVKPFQA 99          
The following BLAST results are available for this feature:
BLAST of CX296290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
GRC11_ORYSJ1.743e-1442.37Putative glutaredoxin-C11 OS=Oryza sativa subsp. j... [more]
GRXC2_ORYSJ2.277e-1439.47Putative glutaredoxin-C2 OS=Oryza sativa subsp. ja... [more]
GRC10_ORYSJ8.653e-1440.00Glutaredoxin-C10 OS=Oryza sativa subsp. japonica G... [more]
GRC12_ORYSJ1.130e-1338.79Putative glutaredoxin-C12 OS=Oryza sativa subsp. j... [more]
GRXC6_ARATH2.518e-1335.29Glutaredoxin-C6 OS=Arabidopsis thaliana GN=GRXC6 P... [more]
GRC13_ORYSJ2.518e-1338.79Glutaredoxin-C13 OS=Oryza sativa subsp. japonica G... [more]
GRXS1_ARATH5.609e-1333.33Putative monothiol glutaredoxin-S1 OS=Arabidopsis ... [more]
GRC11_ARATH1.632e-1233.33Glutaredoxin-C11 OS=Arabidopsis thaliana GN=GRXC11... [more]
GRC10_ARATH1.632e-1231.25Glutaredoxin-C10 OS=Arabidopsis thaliana GN=GRXC10... [more]
GRXS9_ARATH2.784e-1232.74Monothiol glutaredoxin-S9 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC05138D10SK FerrChloL1 Citrus clementina cDNA clone C05138D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296290 ID=CX296290; Name=CX296290; organism=Citrus clementina; type=EST; length=630bp
CCACTCACTACTTAATTACCCTTTTAATCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGTTTTTTCAAATTTTA
ATTAAATTATTCTGCAAAATAATTAATAACCATGCAGCAAGCTATCCCCT
ACAAATCGTGGCAACCCTTTGATCCCCTGAGCCATTCATCGGTATCGACG
AGCAGCAAGAGGGCCGTACGAGGGCCTAGCATTAATACCACCGATGTTGT
CAGCAGCATGGTGTCCGAGAATGCGGTGATCGTGTTCGCGAAGCGCGGGT
GCTGCATGAGCCACGTGGTGAAGCGTCTGCTCTTGGGGCTTGGTGCGAAC
CCTTGTGTTTACGAAGTTGATGAAGGGGATGACGAGGCTAGTGTTCTGGA
TGCATTGGAAATGATTGTTAATAATAATAATAATAATAATGGTAGTCACG
ATGATCGTGATCGCCAGAAGGTGCAGTTCCCAGCTGTGTTTATTGGGGGG
AAGTTGTTTGGCGGGTTGGACAGAATCATGGCTACCCATATCACAGGTGA
ACTGATTCCCGTTTTGAAAGAAGCTAAGGCCTTGTGGCTCTGACGGATCT
TTTTCTTTTTCTTCTTCTTCTTCTTCTTTT
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