CX296290

Overview
NameCX296290
Unique NameCX296290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXS2_ORYSJ (Monothiol glutaredoxin-S2 OS=Oryza sativa subsp. japonica GN=GRXS2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEG--DDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKAL 584
            V  +V E+ V+VFA+RGC M+HV++RLL  +GA+  V E++ G  ++E + L                           PA+F+GG   GGL+ +M  H++G L+P L+E  AL
Sbjct:   31 VGRLVRESPVVVFARRGCYMAHVMRRLLAAVGAHATVIELEGGAAEEEEAALGG---------------------GAALPALFVGGDPVGGLEGLMGLHLSGRLVPRLREVGAL 123          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRXS6_ARATH (Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana GN=GRXS6 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.381e-11
Identity = 36/114 (31.58%), Postives = 59/114 (51.75%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            V S+V +  V++F+K  CCMSH ++ L+ G GA   VYE+D+  +   +  AL  +                 K   PAVFIG +  GG +++M   +  +L  +L+ A A+W+
Sbjct:    4 VRSLVEDKPVVIFSKSSCCMSHSIQTLISGFGAKMTVYELDQFSNGQEIEKALVQMGC---------------KPSVPAVFIGQQFIGGANQVMTLQVKNQLAAMLRRAGAIWV 102          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRC12_ARATH (Putative glutaredoxin-C12 OS=Arabidopsis thaliana GN=GRXC12 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 37/114 (32.46%), Postives = 58/114 (50.88%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            V  + SE A ++F K  CCM H +K L   LGA+P ++E+D+      +  AL  +        GS+          PAVF+GG+  G    +++ H+ G L  +LK + A+WL
Sbjct:    4 VRDLASEKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDKDPQGPDMERALFRV-------FGSNP-------AVPAVFVGGRYVGSAKDVISFHVDGSLKQMLKASNAIWL 103          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRS11_ARATH (Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana GN=GRXS11 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 36/109 (33.03%), Postives = 56/109 (51.38%), Query Frame = 3
Query:  243 DVVSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQKVQFPAVFIGGKLFGGLDRIMATHITGELIPVLK 569
            D V  M SE  V++F K  CC+S+ V+ L   LG NP ++E+D+  +   +  AL  +                     PAVFIGGKL G  + +M+ H++  L+P++K
Sbjct:    2 DKVMRMSSEKGVVIFTKSSCCLSYAVQVLFQDLGVNPKIHEIDKDPECREIEKALMRLGC---------------SKPVPAVFIGGKLVGSTNEVMSMHLSSSLVPLVK 95          
BLAST of CX296290 vs. ExPASy Swiss-Prot
Match: GRC15_ORYSJ (Glutaredoxin-C15 OS=Oryza sativa subsp. japonica GN=GRXC15 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 42/119 (35.29%), Postives = 58/119 (48.74%), Query Frame = 3
Query:  249 VSSMVSENAVIVFAKRGCCMSHVVKRLLLGLGANPCVYEVDEGDDEASVLDALEMIVXXXXXXXGSHDDRDRQK-----VQFPAVFIGGKLFGGLDRIMATHITGELIPVLKEAKALWL 590
            V+ + +E AV++F    C M H V  L   LG    V+E+D         D L           G   +RD  +        PAVFI GKL G  DR+M+ H+ G+L+P+LK A A+WL
Sbjct:    4 VAKLSTEKAVVIFTASNCPMCHTVVSLFSDLGVGAAVHELDR--------DPLH----------GRDMERDLARRLGRSPPVPAVFIAGKLVGSTDRVMSLHLAGKLVPMLKAAGAIWL 104          
The following BLAST results are available for this feature:
BLAST of CX296290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
GRXS2_ORYSJ8.099e-1235.09Monothiol glutaredoxin-S2 OS=Oryza sativa subsp. j... [more]
GRXS6_ARATH1.381e-1131.58Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana ... [more]
GRC12_ARATH2.356e-1132.46Putative glutaredoxin-C12 OS=Arabidopsis thaliana ... [more]
GRS11_ARATH4.019e-1133.03Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana... [more]
GRC15_ORYSJ5.250e-1135.29Glutaredoxin-C15 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionC05138D10SK FerrChloL1 Citrus clementina cDNA clone C05138D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296290 ID=CX296290; Name=CX296290; organism=Citrus clementina; type=EST; length=630bp
CCACTCACTACTTAATTACCCTTTTAATCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGTTTTTTCAAATTTTA
ATTAAATTATTCTGCAAAATAATTAATAACCATGCAGCAAGCTATCCCCT
ACAAATCGTGGCAACCCTTTGATCCCCTGAGCCATTCATCGGTATCGACG
AGCAGCAAGAGGGCCGTACGAGGGCCTAGCATTAATACCACCGATGTTGT
CAGCAGCATGGTGTCCGAGAATGCGGTGATCGTGTTCGCGAAGCGCGGGT
GCTGCATGAGCCACGTGGTGAAGCGTCTGCTCTTGGGGCTTGGTGCGAAC
CCTTGTGTTTACGAAGTTGATGAAGGGGATGACGAGGCTAGTGTTCTGGA
TGCATTGGAAATGATTGTTAATAATAATAATAATAATAATGGTAGTCACG
ATGATCGTGATCGCCAGAAGGTGCAGTTCCCAGCTGTGTTTATTGGGGGG
AAGTTGTTTGGCGGGTTGGACAGAATCATGGCTACCCATATCACAGGTGA
ACTGATTCCCGTTTTGAAAGAAGCTAAGGCCTTGTGGCTCTGACGGATCT
TTTTCTTTTTCTTCTTCTTCTTCTTCTTTT
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