CX296321
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_HELHP (50S ribosomal protein L1 OS=Helicobacter hepaticus GN=rplA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19 Identity = 42/96 (43.75%), Postives = 65/96 (67.71%), Query Frame = -3 Query: 256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543 PNPK GTVT ++ +A+ K G+V +R DK GI+H P GKA F+E+ +L N L +++I KP AKG Y +S+ + +M P+I+L+ +E++D K Sbjct: 139 PNPKTGTVTIDVAKAVANAKSGQVNFRVDKKGIIHAPIGKASFNEEKILDNMLELVRAINRLKPTSAKGKYIRSSSLSLTMSPAIKLDSQELMDMK 234
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_FINM2 (50S ribosomal protein L1 OS=Finegoldia magna (strain ATCC 29328) GN=rplA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19 Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPKAGTVT ++ AI+E K GKVEYR DK+ I+H+P GK F E+ + N A +++I KP +KG Y +S I S+MGP I++N Sbjct: 139 PNPKAGTVTMDVTSAIKEIKAGKVEYRTDKSNIIHVPVGKVSFGEEKIAENINALMQAILKAKPASSKGKYIRSLTIASTMGPGIKVN 226
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SULSY (50S ribosomal protein L1 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rplA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19 Identity = 42/92 (45.65%), Postives = 63/92 (68.48%), Query Frame = -3 Query: 268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543 PNPK GTVTT++ +A+ E KKG+VE++ DKTG +H+P GK F + L N LA + ++ KP GAKG Y ++ + ++M PS++LN E+ Sbjct: 142 PNPKVGTVTTDVKRAVTEAKKGRVEFKVDKTGNLHVPVGKISFEDHKLKENILAVVDAVLKAKPPGAKGQYIRNVVLKTTMSPSVKLNPAEL 233
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PELTS (50S ribosomal protein L1 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19 Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = -3 Query: 268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543 PNPK GTVT +I +A++E K GK+EYR DK GI+H P GK FS + L+ N I+++ KP AKG Y K + S+MGP I++N +++ Sbjct: 139 PNPKTGTVTFDIARAVKEVKAGKIEYRVDKAGIIHAPIGKVSFSTEKLVENLRTLIEALIRAKPAAAKGQYLKGISVSSTMGPGIKVNTQKV 230
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PELPD (50S ribosomal protein L1 OS=Pelobacter propionicus (strain DSM 2379) GN=rplA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19 Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = -3 Query: 268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543 PNPK GTVT + +A++E K GKVE+R +K GIVH P GK F D L N LA ++++ KP AKG+Y K + S+MGP I L+I ++ Sbjct: 138 PNPKVGTVTFEVSRAVKESKAGKVEFRVEKAGIVHAPVGKVSFDADSLKGNLLALVEALVKAKPSAAKGIYIKKISMSSTMGPGINLDIADV 229
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_LEPBP (50S ribosomal protein L1 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=rplA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19 Identity = 41/94 (43.62%), Postives = 66/94 (70.21%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 P PKAGTVTT++ +A++E K G++EYR DK G+VH+ GK FS+D L N A + ++ +KP AKG Y KS + ++MG +++++KE+++ Sbjct: 134 PKPKAGTVTTDVSKAVKELKAGRIEYRPDKGGVVHLGVGKCSFSDDKLSDNINAVVAALMKDKPSDAKGDYLKSFSVAATMGIGVKVDVKELVN 227
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_LEPBA (50S ribosomal protein L1 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=rplA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19 Identity = 41/94 (43.62%), Postives = 66/94 (70.21%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 P PKAGTVTT++ +A++E K G++EYR DK G+VH+ GK FS+D L N A + ++ +KP AKG Y KS + ++MG +++++KE+++ Sbjct: 134 PKPKAGTVTTDVSKAVKELKAGRIEYRPDKGGVVHLGVGKCSFSDDKLSDNINAVVAALMKDKPSDAKGDYLKSFSVAATMGIGVKVDVKELVN 227
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_GEOMG (50S ribosomal protein L1 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19 Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = -3 Query: 268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543 PNPK GTVT ++ +A++E K GKVE+R +K GIVH P GKA F D L N LA ++++ KP AKG Y K + S+MGP + L+I ++ Sbjct: 138 PNPKVGTVTFDVGRAVKESKAGKVEFRVEKAGIVHAPVGKASFDADKLKENLLALVEALVKAKPSAAKGTYIKKISLSSTMGPGLNLDIADV 229
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_GEOKA (50S ribosomal protein L1 OS=Geobacillus kaustophilus GN=rplA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19 Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVT ++ +A++E K GKVEYR DK G +H+P GK F + L NF A ++I KP AKG Y K+ I S+MGP I+++ Sbjct: 138 PNPKTGTVTFDVAKAVQEIKAGKVEYRVDKAGNIHVPIGKVSFDNEKLAENFAAVYEAILKAKPAAAKGTYVKNVTITSTMGPGIKVD 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CAUCR (50S ribosomal protein L1 OS=Caulobacter crescentus GN=rplA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19 Identity = 43/92 (46.74%), Postives = 63/92 (68.48%), Query Frame = -3 Query: 268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543 PNPK GTVT N+ QA+++ K G VE+R +K GIVH GKA F+++ L IN A I+++ +KP GAKGV+ K + S+MGP +++I + Sbjct: 136 PNPKVGTVTPNVAQAVKDAKGGAVEFRVEKAGIVHAGIGKASFTDEALAINVKALIEALNRSKPSGAKGVFIKRVGLSSTMGPGFKVDISSI 227 The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bpback to top |