CX296321

Overview
NameCX296321
Unique NameCX296321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_HELHP (50S ribosomal protein L1 OS=Helicobacter hepaticus GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 42/96 (43.75%), Postives = 65/96 (67.71%), Query Frame = -3
Query:  256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543
            PNPK GTVT ++ +A+   K G+V +R DK GI+H P GKA F+E+ +L N L  +++I   KP  AKG Y +S+ +  +M P+I+L+ +E++D K
Sbjct:  139 PNPKTGTVTIDVAKAVANAKSGQVNFRVDKKGIIHAPIGKASFNEEKILDNMLELVRAINRLKPTSAKGKYIRSSSLSLTMSPAIKLDSQELMDMK 234          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_FINM2 (50S ribosomal protein L1 OS=Finegoldia magna (strain ATCC 29328) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPKAGTVT ++  AI+E K GKVEYR DK+ I+H+P GK  F E+ +  N  A +++I   KP  +KG Y +S  I S+MGP I++N
Sbjct:  139 PNPKAGTVTMDVTSAIKEIKAGKVEYRTDKSNIIHVPVGKVSFGEEKIAENINALMQAILKAKPASSKGKYIRSLTIASTMGPGIKVN 226          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SULSY (50S ribosomal protein L1 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 42/92 (45.65%), Postives = 63/92 (68.48%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPK GTVTT++ +A+ E KKG+VE++ DKTG +H+P GK  F +  L  N LA + ++   KP GAKG Y ++  + ++M PS++LN  E+
Sbjct:  142 PNPKVGTVTTDVKRAVTEAKKGRVEFKVDKTGNLHVPVGKISFEDHKLKENILAVVDAVLKAKPPGAKGQYIRNVVLKTTMSPSVKLNPAEL 233          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PELTS (50S ribosomal protein L1 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPK GTVT +I +A++E K GK+EYR DK GI+H P GK  FS + L+ N    I+++   KP  AKG Y K   + S+MGP I++N +++
Sbjct:  139 PNPKTGTVTFDIARAVKEVKAGKIEYRVDKAGIIHAPIGKVSFSTEKLVENLRTLIEALIRAKPAAAKGQYLKGISVSSTMGPGIKVNTQKV 230          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PELPD (50S ribosomal protein L1 OS=Pelobacter propionicus (strain DSM 2379) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPK GTVT  + +A++E K GKVE+R +K GIVH P GK  F  D L  N LA ++++   KP  AKG+Y K   + S+MGP I L+I ++
Sbjct:  138 PNPKVGTVTFEVSRAVKESKAGKVEFRVEKAGIVHAPVGKVSFDADSLKGNLLALVEALVKAKPSAAKGIYIKKISMSSTMGPGINLDIADV 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_LEPBP (50S ribosomal protein L1 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 41/94 (43.62%), Postives = 66/94 (70.21%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            P PKAGTVTT++ +A++E K G++EYR DK G+VH+  GK  FS+D L  N  A + ++  +KP  AKG Y KS  + ++MG  +++++KE+++
Sbjct:  134 PKPKAGTVTTDVSKAVKELKAGRIEYRPDKGGVVHLGVGKCSFSDDKLSDNINAVVAALMKDKPSDAKGDYLKSFSVAATMGIGVKVDVKELVN 227          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_LEPBA (50S ribosomal protein L1 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 41/94 (43.62%), Postives = 66/94 (70.21%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            P PKAGTVTT++ +A++E K G++EYR DK G+VH+  GK  FS+D L  N  A + ++  +KP  AKG Y KS  + ++MG  +++++KE+++
Sbjct:  134 PKPKAGTVTTDVSKAVKELKAGRIEYRPDKGGVVHLGVGKCSFSDDKLSDNINAVVAALMKDKPSDAKGDYLKSFSVAATMGIGVKVDVKELVN 227          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_GEOMG (50S ribosomal protein L1 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPK GTVT ++ +A++E K GKVE+R +K GIVH P GKA F  D L  N LA ++++   KP  AKG Y K   + S+MGP + L+I ++
Sbjct:  138 PNPKVGTVTFDVGRAVKESKAGKVEFRVEKAGIVHAPVGKASFDADKLKENLLALVEALVKAKPSAAKGTYIKKISLSSTMGPGLNLDIADV 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_GEOKA (50S ribosomal protein L1 OS=Geobacillus kaustophilus GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A++E K GKVEYR DK G +H+P GK  F  + L  NF A  ++I   KP  AKG Y K+  I S+MGP I+++
Sbjct:  138 PNPKTGTVTFDVAKAVQEIKAGKVEYRVDKAGNIHVPIGKVSFDNEKLAENFAAVYEAILKAKPAAAKGTYVKNVTITSTMGPGIKVD 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CAUCR (50S ribosomal protein L1 OS=Caulobacter crescentus GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 43/92 (46.74%), Postives = 63/92 (68.48%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPK GTVT N+ QA+++ K G VE+R +K GIVH   GKA F+++ L IN  A I+++  +KP GAKGV+ K   + S+MGP  +++I  +
Sbjct:  136 PNPKVGTVTPNVAQAVKDAKGGAVEFRVEKAGIVHAGIGKASFTDEALAINVKALIEALNRSKPSGAKGVFIKRVGLSSTMGPGFKVDISSI 227          
The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_HELHP3.865e-1943.7550S ribosomal protein L1 OS=Helicobacter hepaticus... [more]
RL1_FINM23.865e-1950.0050S ribosomal protein L1 OS=Finegoldia magna (stra... [more]
RL1_SULSY5.048e-1945.6550S ribosomal protein L1 OS=Sulfurihydrogenibium s... [more]
RL1_PELTS5.048e-1946.7450S ribosomal protein L1 OS=Pelotomaculum thermopr... [more]
RL1_PELPD5.048e-1947.8350S ribosomal protein L1 OS=Pelobacter propionicus... [more]
RL1_LEPBP5.048e-1943.6250S ribosomal protein L1 OS=Leptospira biflexa ser... [more]
RL1_LEPBA5.048e-1943.6250S ribosomal protein L1 OS=Leptospira biflexa ser... [more]
RL1_GEOMG5.048e-1947.8350S ribosomal protein L1 OS=Geobacter metallireduc... [more]
RL1_GEOKA5.048e-1948.8650S ribosomal protein L1 OS=Geobacillus kaustophil... [more]
RL1_CAUCR5.048e-1946.7450S ribosomal protein L1 OS=Caulobacter crescentus... [more]

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Properties
Property NameValue
Genbank descriptionC05138G11SK FerrChloL1 Citrus clementina cDNA clone C05138G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bp
GCGAGGCCTCGTGCCGAATTCGCACGAGGTTCAGTACGGAAAAAAGCCAT
GCGGTATGCATTTTTCCTTTTTTTTTTATTTGCTACAATCTCATCCACAT
TGATAATCTAGATCTCCTCACCTCACCATAATTCGCTCTCCTACAACTTT
TGCCAAGCAGTGGCAAGCCCTGGCATGGGTATCAAAGAGGCTGACTGAAC
AGTTAAAGATATCATTTACAAAATTTAGTTATGTCGTTTAGAAATTTGAT
GGAAGCTTGTAATCGAGCATTTCTTTTATGTTTAATCGAATGGAAGGTCC
CATTGATGAGCAAATGTAAGCACTTTTCCAGTACACTCCTTTGGCCCCTT
TTGGCTTGTTTGCTTCAATTGATTTAATAGCAGCAAGGAAGTTTATGAGG
AGGTCATCTTCAGAAAAATCAGCTTTCCCAAAAGGTATGTGGACAATCCC
AGTTTTATCTGCTCTATATTCAACTTTTCCCTTCTTGAATTCTTCTATGG
CCTGAGGTATGTTAGTTGTAACAGTACCAGCTTTAGGATTTGGCA
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