CX296321

Overview
NameCX296321
Unique NameCX296321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_BACAN (50S ribosomal protein L1 OS=Bacillus anthracis GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPK GTVT ++ +A+ E K GKVEYR DK G +H+P GK  F +  L+ NF     +++  KP  AKG Y K+  + S+MGP +R+++  +
Sbjct:  138 PNPKTGTVTFDVTKAVNEIKAGKVEYRVDKAGNIHVPIGKVSFEDAKLVENFRTIADTLQKVKPAAAKGTYMKNVTVASTMGPGVRVDVSTL 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_BACAH (50S ribosomal protein L1 OS=Bacillus thuringiensis (strain Al Hakam) GN=rplA PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPK GTVT ++ +A+ E K GKVEYR DK G +H+P GK  F +  L+ NF     +++  KP  AKG Y K+  + S+MGP +R+++  +
Sbjct:  138 PNPKTGTVTFDVTKAVNEIKAGKVEYRVDKAGNIHVPIGKVSFEDAKLVENFRTIADTLQKVKPAAAKGTYMKNVTVASTMGPGVRVDVSTL 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_BACAC (50S ribosomal protein L1 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPK GTVT ++ +A+ E K GKVEYR DK G +H+P GK  F +  L+ NF     +++  KP  AKG Y K+  + S+MGP +R+++  +
Sbjct:  138 PNPKTGTVTFDVTKAVNEIKAGKVEYRVDKAGNIHVPIGKVSFEDAKLVENFRTIADTLQKVKPAAAKGTYMKNVTVASTMGPGVRVDVSTL 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_BACAA (50S ribosomal protein L1 OS=Bacillus anthracis (strain A0248) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.048e-19
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPK GTVT ++ +A+ E K GKVEYR DK G +H+P GK  F +  L+ NF     +++  KP  AKG Y K+  + S+MGP +R+++  +
Sbjct:  138 PNPKTGTVTFDVTKAVNEIKAGKVEYRVDKAGNIHVPIGKVSFEDAKLVENFRTIADTLQKVKPAAAKGTYMKNVTVASTMGPGVRVDVSTL 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STAHJ (50S ribosomal protein L1 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.594e-19
Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A+EE K GKVEYRA+K GIVH   GK  FS++ L+ NF      +   KP  AKG Y+KS  + ++MGP ++++
Sbjct:  138 PNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSFSDEKLVENFKTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKID 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_OCEIH (50S ribosomal protein L1 OS=Oceanobacillus iheyensis GN=rplA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.594e-19
Identity = 40/89 (44.94%), Postives = 61/89 (68.54%), Query Frame = -3
Query:  277 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 543
            PNPK GTVT  + +A+ + K GKVEYR DK+  +H+P GK  F +  L+ NF+A  + +   KP+ +KG+Y K+A I S+MGP I++++
Sbjct:  138 PNPKTGTVTFEVEKAVNDIKAGKVEYRVDKSANIHVPIGKISFDDQKLVDNFVALTEQLVKVKPQSSKGIYMKNASITSTMGPGIKVDV 226          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_GEOSF (50S ribosomal protein L1 OS=Geobacter sp. (strain FRC-32) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.594e-19
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPK GTVT ++ +A+ E K GKVE+R +K GI+H P GK  F  D L  N LA I ++  +KP  AKG Y K   + S+MGP + L++ ++
Sbjct:  137 PNPKVGTVTFDVGRAVNESKSGKVEFRVEKAGIIHAPVGKVSFETDKLKENILALIDALVKSKPSAAKGTYIKKISVSSTMGPGVNLDVSDV 228          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOTE (50S ribosomal protein L1 OS=Clostridium tetani GN=rplA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.594e-19
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK+GTVT ++ +A+ + K GKVEYR DKT I+H+  GK  F  + L  NF   + +I   KP  AKG Y KS  + S+MGP +++N  ++LD
Sbjct:  136 PNPKSGTVTFDVAKALNDIKAGKVEYRVDKTAIIHVVIGKKSFGPEKLKDNFRVLMDAIIKAKPSAAKGQYLKSVSVSSTMGPGVKINPSKVLD 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYMTH (50S ribosomal protein L1 OS=Symbiobacterium thermophilum GN=rplA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.611e-19
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++  AI+E K GKVEYR DK GIV  P GKA F  + L  NF A  +++   KP  AKG Y KS  I ++MGP I++N
Sbjct:  138 PNPKTGTVTFDVANAIQEIKAGKVEYRTDKAGIVAAPIGKASFDVERLAANFRALTEALLRAKPAAAKGQYMKSVTISATMGPGIKVN 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_RICAH (50S ribosomal protein L1 OS=Rickettsia akari (strain Hartford) GN=rplA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.611e-19
Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = -3
Query:  277 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 543
            PNPK GTVT +I  AI+  K G+VEYRA+K+GI+H   GK  FS+ DLL N  A I+++   KP G KG Y K+ Y+ S+MG S+++++
Sbjct:  147 PNPKLGTVTLDIKNAIKNAKSGQVEYRAEKSGIIHAGLGKLSFSDQDLLKNLNAFIEAVIKAKPSGLKGSYLKAMYLSSTMGASVQIDL 235          
The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_BACAN5.048e-1943.4850S ribosomal protein L1 OS=Bacillus anthracis GN=... [more]
RL1_BACAH5.048e-1943.4850S ribosomal protein L1 OS=Bacillus thuringiensis... [more]
RL1_BACAC5.048e-1943.4850S ribosomal protein L1 OS=Bacillus anthracis (st... [more]
RL1_BACAA5.048e-1943.4850S ribosomal protein L1 OS=Bacillus anthracis (st... [more]
RL1_STAHJ6.594e-1947.7350S ribosomal protein L1 OS=Staphylococcus haemoly... [more]
RL1_OCEIH6.594e-1944.9450S ribosomal protein L1 OS=Oceanobacillus iheyens... [more]
RL1_GEOSF6.594e-1945.6550S ribosomal protein L1 OS=Geobacter sp. (strain ... [more]
RL1_CLOTE6.594e-1945.7450S ribosomal protein L1 OS=Clostridium tetani GN=... [more]
RL1_SYMTH8.611e-1952.2750S ribosomal protein L1 OS=Symbiobacterium thermo... [more]
RL1_RICAH8.611e-1949.4450S ribosomal protein L1 OS=Rickettsia akari (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05138G11SK FerrChloL1 Citrus clementina cDNA clone C05138G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bp
GCGAGGCCTCGTGCCGAATTCGCACGAGGTTCAGTACGGAAAAAAGCCAT
GCGGTATGCATTTTTCCTTTTTTTTTTATTTGCTACAATCTCATCCACAT
TGATAATCTAGATCTCCTCACCTCACCATAATTCGCTCTCCTACAACTTT
TGCCAAGCAGTGGCAAGCCCTGGCATGGGTATCAAAGAGGCTGACTGAAC
AGTTAAAGATATCATTTACAAAATTTAGTTATGTCGTTTAGAAATTTGAT
GGAAGCTTGTAATCGAGCATTTCTTTTATGTTTAATCGAATGGAAGGTCC
CATTGATGAGCAAATGTAAGCACTTTTCCAGTACACTCCTTTGGCCCCTT
TTGGCTTGTTTGCTTCAATTGATTTAATAGCAGCAAGGAAGTTTATGAGG
AGGTCATCTTCAGAAAAATCAGCTTTCCCAAAAGGTATGTGGACAATCCC
AGTTTTATCTGCTCTATATTCAACTTTTCCCTTCTTGAATTCTTCTATGG
CCTGAGGTATGTTAGTTGTAACAGTACCAGCTTTAGGATTTGGCA
back to top