CX296321

Overview
NameCX296321
Unique NameCX296321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STAAR (50S ribosomal protein L1 OS=Staphylococcus aureus (strain MRSA252) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.125e-18
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -3 
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A+EE K GKVEYRA+K GIVH   GK  F+++ L+ NF      +   KP  AKG Y+KS  + ++MGP ++++
Sbjct:  138 PNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSFTDEQLIENFNTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKID 225
[Close]
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STAAN (50S ribosomal protein L1 OS=Staphylococcus aureus (strain N315) GN=rplA PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.125e-18
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -3 
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A+EE K GKVEYRA+K GIVH   GK  F+++ L+ NF      +   KP  AKG Y+KS  + ++MGP ++++
Sbjct:  138 PNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSFTDEQLIENFNTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKID 225
[Close]
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STAAM (50S ribosomal protein L1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rplA PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.125e-18
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -3 
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A+EE K GKVEYRA+K GIVH   GK  F+++ L+ NF      +   KP  AKG Y+KS  + ++MGP ++++
Sbjct:  138 PNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSFTDEQLIENFNTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKID 225
[Close]
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STAAE (50S ribosomal protein L1 OS=Staphylococcus aureus (strain Newman) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.125e-18
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -3 
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A+EE K GKVEYRA+K GIVH   GK  F+++ L+ NF      +   KP  AKG Y+KS  + ++MGP ++++
Sbjct:  138 PNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSFTDEQLIENFNTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKID 225
[Close]
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STAAC (50S ribosomal protein L1 OS=Staphylococcus aureus (strain COL) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.125e-18
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -3 
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A+EE K GKVEYRA+K GIVH   GK  F+++ L+ NF      +   KP  AKG Y+KS  + ++MGP ++++
Sbjct:  138 PNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSFTDEQLIENFNTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKID 225
[Close]
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STAAB (50S ribosomal protein L1 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.125e-18
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -3 
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A+EE K GKVEYRA+K GIVH   GK  F+++ L+ NF      +   KP  AKG Y+KS  + ++MGP ++++
Sbjct:  138 PNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSFTDEQLIENFNTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKID 225
[Close]
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STAA9 (50S ribosomal protein L1 OS=Staphylococcus aureus (strain JH9) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.125e-18
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -3 
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A+EE K GKVEYRA+K GIVH   GK  F+++ L+ NF      +   KP  AKG Y+KS  + ++MGP ++++
Sbjct:  138 PNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSFTDEQLIENFNTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKID 225
[Close]
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STAA8 (50S ribosomal protein L1 OS=Staphylococcus aureus (strain NCTC 8325) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.125e-18
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -3 
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A+EE K GKVEYRA+K GIVH   GK  F+++ L+ NF      +   KP  AKG Y+KS  + ++MGP ++++
Sbjct:  138 PNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSFTDEQLIENFNTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKID 225
[Close]
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STAA3 (50S ribosomal protein L1 OS=Staphylococcus aureus (strain USA300) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.125e-18
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -3 
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A+EE K GKVEYRA+K GIVH   GK  F+++ L+ NF      +   KP  AKG Y+KS  + ++MGP ++++
Sbjct:  138 PNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSFTDEQLIENFNTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKID 225
[Close]
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STAA2 (50S ribosomal protein L1 OS=Staphylococcus aureus (strain JH1) GN=rplA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.125e-18
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = -3 
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A+EE K GKVEYRA+K GIVH   GK  F+++ L+ NF      +   KP  AKG Y+KS  + ++MGP ++++
Sbjct:  138 PNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSFTDEQLIENFNTLQDVLAKAKPSSAKGTYFKSVAVTTTMGPGVKID 225
The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_STAAR1.125e-1846.5950S ribosomal protein L1 OS=Staphylococcus aureus ... [more]
RL1_STAAN1.125e-1846.5950S ribosomal protein L1 OS=Staphylococcus aureus ... [more]
RL1_STAAM1.125e-1846.5950S ribosomal protein L1 OS=Staphylococcus aureus ... [more]
RL1_STAAE1.125e-1846.5950S ribosomal protein L1 OS=Staphylococcus aureus ... [more]
RL1_STAAC1.125e-1846.5950S ribosomal protein L1 OS=Staphylococcus aureus ... [more]
RL1_STAAB1.125e-1846.5950S ribosomal protein L1 OS=Staphylococcus aureus ... [more]
RL1_STAA91.125e-1846.5950S ribosomal protein L1 OS=Staphylococcus aureus ... [more]
RL1_STAA81.125e-1846.5950S ribosomal protein L1 OS=Staphylococcus aureus ... [more]
RL1_STAA31.125e-1846.5950S ribosomal protein L1 OS=Staphylococcus aureus ... [more]
RL1_STAA21.125e-1846.5950S ribosomal protein L1 OS=Staphylococcus aureus ... [more]

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Properties
Property NameValue
Genbank descriptionC05138G11SK FerrChloL1 Citrus clementina cDNA clone C05138G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bp
GCGAGGCCTCGTGCCGAATTCGCACGAGGTTCAGTACGGAAAAAAGCCAT
GCGGTATGCATTTTTCCTTTTTTTTTTATTTGCTACAATCTCATCCACAT
TGATAATCTAGATCTCCTCACCTCACCATAATTCGCTCTCCTACAACTTT
TGCCAAGCAGTGGCAAGCCCTGGCATGGGTATCAAAGAGGCTGACTGAAC
AGTTAAAGATATCATTTACAAAATTTAGTTATGTCGTTTAGAAATTTGAT
GGAAGCTTGTAATCGAGCATTTCTTTTATGTTTAATCGAATGGAAGGTCC
CATTGATGAGCAAATGTAAGCACTTTTCCAGTACACTCCTTTGGCCCCTT
TTGGCTTGTTTGCTTCAATTGATTTAATAGCAGCAAGGAAGTTTATGAGG
AGGTCATCTTCAGAAAAATCAGCTTTCCCAAAAGGTATGTGGACAATCCC
AGTTTTATCTGCTCTATATTCAACTTTTCCCTTCTTGAATTCTTCTATGG
CCTGAGGTATGTTAGTTGTAACAGTACCAGCTTTAGGATTTGGCA
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