CX296321

Overview
NameCX296321
Unique NameCX296321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNY3 (50S ribosomal protein L1 OS=Synechocystis sp. (strain PCC 6803) GN=rplA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.500e-26
Identity = 53/100 (53.00%), Postives = 73/100 (73.00%), Query Frame = -3
Query:  244 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 543
            P+PK GTVT ++  A+ EFK GK+E+RAD+TGIVH+ FGKA FS DDLL N  A  ++I+ N+P GAKG +W++ ++ SSMGPSI ++I  + D K   N
Sbjct:  139 PSPKGGTVTADLAAAVNEFKAGKLEFRADRTGIVHVMFGKASFSADDLLANLKALQETIDRNRPSGAKGRFWRTVFVSSSMGPSIPVDINALRDLKFEDN 238          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNS3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9311) GN=rplA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.265e-26
Identity = 54/94 (57.45%), Postives = 72/94 (76.60%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPKAGTVTT++  AI+EFK GK+E+RAD+TGIVH+ FGKA F+ + LL N     ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++I  + D
Sbjct:  137 PNPKAGTVTTDLASAIQEFKAGKLEFRADRTGIVHVRFGKASFTAEALLENLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDIALLQD 230          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CYAP8 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 8801) GN=rplA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.569e-26
Identity = 52/97 (53.61%), Postives = 73/97 (75.26%), Query Frame = -3
Query:  253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543
            P+PK GTVT ++  AI EFK GK+E+RAD+TGIVH+ FGKA F+ +DLL N  A  ++++ N+P GAKG YW+S ++ +SMGPSI ++I  + D KL
Sbjct:  139 PSPKGGTVTADLTNAITEFKAGKLEFRADRTGIVHVMFGKASFTPEDLLANLKALQETVDRNRPSGAKGRYWRSVFVSASMGPSIAVDINALRDLKL 235          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNJA (50S ribosomal protein L1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.241e-25
Identity = 53/97 (54.64%), Postives = 73/97 (75.26%), Query Frame = -3
Query:  253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543
            P+PK GTVT ++ QAI+EFK GK+EYRADKTGIVH+ FGK  F  + LL N  A  +SI+ N+P GAKG YW++ ++C++MGPSI ++I  + + KL
Sbjct:  138 PSPKGGTVTMDLAQAIKEFKAGKLEYRADKTGIVHLIFGKCKFPVEALLENLKAVQESIDRNRPPGAKGKYWRALHVCATMGPSIEVDINALRELKL 234          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNS9 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9902) GN=rplA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.620e-25
Identity = 52/92 (56.52%), Postives = 70/92 (76.09%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPKAGTVTT++  AI++FK GK+E+RAD+TGIVH+ FGKA F+ D LL N     ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++   +
Sbjct:  137 PNPKAGTVTTDLAAAIKDFKAGKLEFRADRTGIVHVRFGKASFTADALLENLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDFSAL 228          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_CYACA (50S ribosomal protein L1, chloroplastic OS=Cyanidium caldarium GN=rpl1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.620e-25
Identity = 50/92 (54.35%), Postives = 73/92 (79.35%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            P+PK+G+VT++I  AI+EFKKGK+EYR DK+GIVH   GK DF+ +DLL N +A  KSI+ N+P GAKG YWK+ Y+C++M P+I+++  ++
Sbjct:  139 PSPKSGSVTSDIYNAIQEFKKGKLEYRTDKSGIVHSIIGKIDFTAEDLLNNLIAIKKSIDQNRPNGAKGKYWKNMYLCTTMSPAIKIDFNKL 230          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_TRIEI (50S ribosomal protein L1 OS=Trichodesmium erythraeum (strain IMS101) GN=rplA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.116e-25
Identity = 50/97 (51.55%), Postives = 74/97 (76.29%), Query Frame = -3
Query:  253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543
            P+PK GTVT ++ +AI+EFK GK+E+RAD++GIVH+ FGK  FS +DLLIN  A  + I+ N+P GAKG YW++ ++ ++MGPSI +++  + D KL
Sbjct:  138 PSPKGGTVTFDLTKAIDEFKAGKLEFRADRSGIVHVMFGKTSFSVEDLLINLKALQECIDRNRPSGAKGRYWRTIFVSATMGPSIEIDVSSLQDLKL 234          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNPX (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH8102) GN=rplA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.610e-25
Identity = 52/94 (55.32%), Postives = 70/94 (74.47%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPKAGTVT ++  AI+EFK GK+E+RAD+TGIVH+ FGKA F+ + LL N     ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++   + D
Sbjct:  137 PNPKAGTVTIDLAGAIQEFKAGKLEFRADRTGIVHVRFGKASFTAEALLQNLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDFSALQD 230          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_CYAPA (50S ribosomal protein L1, cyanelle OS=Cyanophora paradoxa GN=rpl1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.157e-25
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = -3
Query:  244 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 543
            P+PK GTVT ++ QAI +FK GK+E+R D+TGIVH+ FGKA+FSE+ LL N  A  ++++ N+P G KG YWKS YI S+M PSI ++   + D KL  N
Sbjct:  137 PSPKGGTVTFDLAQAINDFKAGKLEFRNDRTGIVHVLFGKANFSEEALLGNLKAVQEAVDRNRPSGVKGKYWKSIYITSTMSPSIEVDYNLLRDLKLTEN 236          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNP2 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.050e-24
Identity = 50/94 (53.19%), Postives = 71/94 (75.53%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            P+PK GTVTT++  AI  FK GK E+RAD+ GIVH+ FGK+ F+ +DLL+N  A  ++I+ N+P GAKG YW+S Y+ +SMGPSI+++I  + D
Sbjct:  138 PSPKGGTVTTDVATAIAAFKAGKQEFRADRAGIVHVLFGKSSFAAEDLLVNLKALQETIDRNRPSGAKGRYWRSIYVSASMGPSIQVDINALRD 231          
The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_SYNY32.500e-2653.0050S ribosomal protein L1 OS=Synechocystis sp. (str... [more]
RL1_SYNS33.265e-2657.4550S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_CYAP85.569e-2653.6150S ribosomal protein L1 OS=Cyanothece sp. (strain... [more]
RL1_SYNJA1.241e-2554.6450S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_SYNS91.620e-2556.5250S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RK1_CYACA1.620e-2554.3550S ribosomal protein L1, chloroplastic OS=Cyanidi... [more]
RL1_TRIEI2.116e-2551.5550S ribosomal protein L1 OS=Trichodesmium erythrae... [more]
RL1_SYNPX3.610e-2555.3250S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RK1_CYAPA6.157e-2553.0050S ribosomal protein L1, cyanelle OS=Cyanophora p... [more]
RL1_SYNP21.050e-2453.1950S ribosomal protein L1 OS=Synechococcus sp. (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05138G11SK FerrChloL1 Citrus clementina cDNA clone C05138G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bp
GCGAGGCCTCGTGCCGAATTCGCACGAGGTTCAGTACGGAAAAAAGCCAT
GCGGTATGCATTTTTCCTTTTTTTTTTATTTGCTACAATCTCATCCACAT
TGATAATCTAGATCTCCTCACCTCACCATAATTCGCTCTCCTACAACTTT
TGCCAAGCAGTGGCAAGCCCTGGCATGGGTATCAAAGAGGCTGACTGAAC
AGTTAAAGATATCATTTACAAAATTTAGTTATGTCGTTTAGAAATTTGAT
GGAAGCTTGTAATCGAGCATTTCTTTTATGTTTAATCGAATGGAAGGTCC
CATTGATGAGCAAATGTAAGCACTTTTCCAGTACACTCCTTTGGCCCCTT
TTGGCTTGTTTGCTTCAATTGATTTAATAGCAGCAAGGAAGTTTATGAGG
AGGTCATCTTCAGAAAAATCAGCTTTCCCAAAAGGTATGTGGACAATCCC
AGTTTTATCTGCTCTATATTCAACTTTTCCCTTCTTGAATTCTTCTATGG
CCTGAGGTATGTTAGTTGTAACAGTACCAGCTTTAGGATTTGGCA
back to top