CX296321
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNY3 (50S ribosomal protein L1 OS=Synechocystis sp. (strain PCC 6803) GN=rplA PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 2.500e-26 Identity = 53/100 (53.00%), Postives = 73/100 (73.00%), Query Frame = -3 Query: 244 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 543 P+PK GTVT ++ A+ EFK GK+E+RAD+TGIVH+ FGKA FS DDLL N A ++I+ N+P GAKG +W++ ++ SSMGPSI ++I + D K N Sbjct: 139 PSPKGGTVTADLAAAVNEFKAGKLEFRADRTGIVHVMFGKASFSADDLLANLKALQETIDRNRPSGAKGRFWRTVFVSSSMGPSIPVDINALRDLKFEDN 238
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNS3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9311) GN=rplA PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 3.265e-26 Identity = 54/94 (57.45%), Postives = 72/94 (76.60%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPKAGTVTT++ AI+EFK GK+E+RAD+TGIVH+ FGKA F+ + LL N ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++I + D Sbjct: 137 PNPKAGTVTTDLASAIQEFKAGKLEFRADRTGIVHVRFGKASFTAEALLENLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDIALLQD 230
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CYAP8 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 8801) GN=rplA PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 5.569e-26 Identity = 52/97 (53.61%), Postives = 73/97 (75.26%), Query Frame = -3 Query: 253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543 P+PK GTVT ++ AI EFK GK+E+RAD+TGIVH+ FGKA F+ +DLL N A ++++ N+P GAKG YW+S ++ +SMGPSI ++I + D KL Sbjct: 139 PSPKGGTVTADLTNAITEFKAGKLEFRADRTGIVHVMFGKASFTPEDLLANLKALQETVDRNRPSGAKGRYWRSVFVSASMGPSIAVDINALRDLKL 235
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNJA (50S ribosomal protein L1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplA PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.241e-25 Identity = 53/97 (54.64%), Postives = 73/97 (75.26%), Query Frame = -3 Query: 253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543 P+PK GTVT ++ QAI+EFK GK+EYRADKTGIVH+ FGK F + LL N A +SI+ N+P GAKG YW++ ++C++MGPSI ++I + + KL Sbjct: 138 PSPKGGTVTMDLAQAIKEFKAGKLEYRADKTGIVHLIFGKCKFPVEALLENLKAVQESIDRNRPPGAKGKYWRALHVCATMGPSIEVDINALRELKL 234
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNS9 (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9902) GN=rplA PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.620e-25 Identity = 52/92 (56.52%), Postives = 70/92 (76.09%), Query Frame = -3 Query: 268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543 PNPKAGTVTT++ AI++FK GK+E+RAD+TGIVH+ FGKA F+ D LL N ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++ + Sbjct: 137 PNPKAGTVTTDLAAAIKDFKAGKLEFRADRTGIVHVRFGKASFTADALLENLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDFSAL 228
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_CYACA (50S ribosomal protein L1, chloroplastic OS=Cyanidium caldarium GN=rpl1 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.620e-25 Identity = 50/92 (54.35%), Postives = 73/92 (79.35%), Query Frame = -3 Query: 268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543 P+PK+G+VT++I AI+EFKKGK+EYR DK+GIVH GK DF+ +DLL N +A KSI+ N+P GAKG YWK+ Y+C++M P+I+++ ++ Sbjct: 139 PSPKSGSVTSDIYNAIQEFKKGKLEYRTDKSGIVHSIIGKIDFTAEDLLNNLIAIKKSIDQNRPNGAKGKYWKNMYLCTTMSPAIKIDFNKL 230
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_TRIEI (50S ribosomal protein L1 OS=Trichodesmium erythraeum (strain IMS101) GN=rplA PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.116e-25 Identity = 50/97 (51.55%), Postives = 74/97 (76.29%), Query Frame = -3 Query: 253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543 P+PK GTVT ++ +AI+EFK GK+E+RAD++GIVH+ FGK FS +DLLIN A + I+ N+P GAKG YW++ ++ ++MGPSI +++ + D KL Sbjct: 138 PSPKGGTVTFDLTKAIDEFKAGKLEFRADRSGIVHVMFGKTSFSVEDLLINLKALQECIDRNRPSGAKGRYWRTIFVSATMGPSIEIDVSSLQDLKL 234
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNPX (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH8102) GN=rplA PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 3.610e-25 Identity = 52/94 (55.32%), Postives = 70/94 (74.47%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPKAGTVT ++ AI+EFK GK+E+RAD+TGIVH+ FGKA F+ + LL N ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++ + D Sbjct: 137 PNPKAGTVTIDLAGAIQEFKAGKLEFRADRTGIVHVRFGKASFTAEALLQNLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDFSALQD 230
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_CYAPA (50S ribosomal protein L1, cyanelle OS=Cyanophora paradoxa GN=rpl1 PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 6.157e-25 Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = -3 Query: 244 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKLPSN 543 P+PK GTVT ++ QAI +FK GK+E+R D+TGIVH+ FGKA+FSE+ LL N A ++++ N+P G KG YWKS YI S+M PSI ++ + D KL N Sbjct: 137 PSPKGGTVTFDLAQAINDFKAGKLEFRNDRTGIVHVLFGKANFSEEALLGNLKAVQEAVDRNRPSGVKGKYWKSIYITSTMSPSIEVDYNLLRDLKLTEN 236
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNP2 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplA PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.050e-24 Identity = 50/94 (53.19%), Postives = 71/94 (75.53%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 P+PK GTVTT++ AI FK GK E+RAD+ GIVH+ FGK+ F+ +DLL+N A ++I+ N+P GAKG YW+S Y+ +SMGPSI+++I + D Sbjct: 138 PSPKGGTVTTDVATAIAAFKAGKQEFRADRAGIVHVLFGKSSFAAEDLLVNLKALQETIDRNRPSGAKGRYWRSIYVSASMGPSIQVDINALRD 231 The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bpback to top |