CX296321

Overview
NameCX296321
Unique NameCX296321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_GRATL (50S ribosomal protein L1, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.372e-24
Identity = 51/90 (56.67%), Postives = 72/90 (80.00%), Query Frame = -3
Query:  274 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 543
            P+PKAGTVT N+   I+EFK GK+EY+ D++GI+HIPFGK +F+ +DL IN +   +SI+ N+P+G+KG YWKS +I S+MGPSI L+I+
Sbjct:  138 PSPKAGTVTHNLITTIKEFKAGKLEYKIDRSGILHIPFGKLNFNVEDLHINLITLQESIDRNRPQGSKGKYWKSVHINSTMGPSIPLDIQ 227          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROM4 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.791e-24
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK GTVT ++  AI+EFK GK+E+RADK GI+H+ FGKA F+ D LL N     ++I+ NKP GAKG +WK+ YI S+MGPSI ++I  + D
Sbjct:  137 PNPKTGTVTADLVGAIKEFKAGKLEFRADKAGIIHVRFGKASFNADALLENLKTLQETIDRNKPSGAKGRFWKTLYITSTMGPSIEVDIAALQD 230          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_ODOSI (50S ribosomal protein L1, chloroplastic OS=Odontella sinensis GN=rpl1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.791e-24
Identity = 49/93 (52.69%), Postives = 69/93 (74.19%), Query Frame = -3
Query:  265 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 543
            P+PK+GTV+T +   + EFKKGK EY+ADK G+VH+ FGK++F+   L+ N  A  KSIE N+P G KG Y+KS +IC++MGPSI+L++   L
Sbjct:  138 PSPKSGTVSTTLTATLSEFKKGKFEYKADKAGVVHVSFGKSNFTHSQLMENLTALYKSIEQNRPSGVKGKYFKSLFICTTMGPSIQLDLNIFL 230          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNJB (50S ribosomal protein L1 OS=Synechococcus sp. GN=rplA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.056e-24
Identity = 51/97 (52.58%), Postives = 72/97 (74.23%), Query Frame = -3
Query:  253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543
            P+PK GTVT ++ QAI+EFK GK+EYRAD+TGIVH+ FGK  F  + LL N  A  +SI+ N+P GAKG YW++ ++ ++MGPSI ++I  + + KL
Sbjct:  138 PSPKGGTVTMDLAQAIKEFKAGKLEYRADRTGIVHLIFGKCKFPVEALLENLKAVQESIDRNRPSGAKGKYWRTLHVSATMGPSIEVDINALRELKL 234          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_PHATR (50S ribosomal protein L1, chloroplastic OS=Phaeodactylum tricornutum GN=rpl1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.991e-24
Identity = 48/90 (53.33%), Postives = 70/90 (77.78%), Query Frame = -3
Query:  274 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 543
            P+PK+GTVT+ +   + EFKKGK EY+ADKTGIVH+ FGK++F+ + L+ N  A  +SIE N+P G KG Y+KS  IC++MGPS++L+++
Sbjct:  138 PSPKSGTVTSTLQSTLTEFKKGKFEYKADKTGIVHVNFGKSNFTNEQLVENLKALYQSIEQNRPSGVKGKYFKSVSICTTMGPSVKLDLE 227          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_GLOVI (50S ribosomal protein L1 OS=Gloeobacter violaceus GN=rplA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.981e-23
Identity = 51/97 (52.58%), Postives = 70/97 (72.16%), Query Frame = -3
Query:  253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543
            P+PK GTVT ++  AI EFK GK+E+RAD+TGIVHIPFGK  F+ + L+ N  +   +I+  KP GAKG YW++ +I S+MGPSI ++I  + D KL
Sbjct:  138 PSPKGGTVTMDLVGAIREFKAGKLEFRADRTGIVHIPFGKVSFTPEALMDNLKSVQDAIDRAKPSGAKGRYWRTFHIKSTMGPSIEIDINALRDLKL 234          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THETH (50S ribosomal protein L1 OS=Thermus thermophilus GN=rplA PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPKAGTV  NI + I E K G++E+R DKTG +H P GKA F  + L  N  A I+++EA+KP+GAKG + +S Y+ ++MGPS+R+N
Sbjct:  139 PNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRIN 226          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THET8 (50S ribosomal protein L1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rplA PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPKAGTV  NI + I E K G++E+R DKTG +H P GKA F  + L  N  A I+++EA+KP+GAKG + +S Y+ ++MGPS+R+N
Sbjct:  139 PNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRIN 226          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THET2 (50S ribosomal protein L1 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rplA PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPKAGTV  NI + I E K G++E+R DKTG +H P GKA F  + L  N  A I+++EA+KP+GAKG + +S Y+ ++MGPS+R+N
Sbjct:  139 PNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRIN 226          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THESQ (50S ribosomal protein L1 OS=Thermotoga sp. (strain RQ2) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22
Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = -3
Query:  265 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 543
            P+PK+GTVT  + +A++EFKKG++E R DKTG +HIP GK  F  + L  N +AAIK I   KP G KG + K A + S+MGP I+LN++ +L
Sbjct:  139 PSPKSGTVTQEVAEAVKEFKKGRIEVRTDKTGNIHIPVGKRSFDNEKLKENIIAAIKQIMQMKPAGVKGQFIKKAVLSSTMGPGIKLNLQSLL 231          
The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK1_GRATL1.372e-2456.6750S ribosomal protein L1, chloroplastic OS=Gracila... [more]
RL1_PROM41.791e-2455.3250S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RK1_ODOSI1.791e-2452.6950S ribosomal protein L1, chloroplastic OS=Odontel... [more]
RL1_SYNJB3.056e-2452.5850S ribosomal protein L1 OS=Synechococcus sp. GN=r... [more]
RK1_PHATR3.991e-2453.3350S ribosomal protein L1, chloroplastic OS=Phaeoda... [more]
RL1_GLOVI1.981e-2352.5850S ribosomal protein L1 OS=Gloeobacter violaceus ... [more]
RL1_THETH8.322e-2252.2750S ribosomal protein L1 OS=Thermus thermophilus G... [more]
RL1_THET88.322e-2252.2750S ribosomal protein L1 OS=Thermus thermophilus (... [more]
RL1_THET28.322e-2252.2750S ribosomal protein L1 OS=Thermus thermophilus (... [more]
RL1_THESQ8.322e-2250.5450S ribosomal protein L1 OS=Thermotoga sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionC05138G11SK FerrChloL1 Citrus clementina cDNA clone C05138G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bp
GCGAGGCCTCGTGCCGAATTCGCACGAGGTTCAGTACGGAAAAAAGCCAT
GCGGTATGCATTTTTCCTTTTTTTTTTATTTGCTACAATCTCATCCACAT
TGATAATCTAGATCTCCTCACCTCACCATAATTCGCTCTCCTACAACTTT
TGCCAAGCAGTGGCAAGCCCTGGCATGGGTATCAAAGAGGCTGACTGAAC
AGTTAAAGATATCATTTACAAAATTTAGTTATGTCGTTTAGAAATTTGAT
GGAAGCTTGTAATCGAGCATTTCTTTTATGTTTAATCGAATGGAAGGTCC
CATTGATGAGCAAATGTAAGCACTTTTCCAGTACACTCCTTTGGCCCCTT
TTGGCTTGTTTGCTTCAATTGATTTAATAGCAGCAAGGAAGTTTATGAGG
AGGTCATCTTCAGAAAAATCAGCTTTCCCAAAAGGTATGTGGACAATCCC
AGTTTTATCTGCTCTATATTCAACTTTTCCCTTCTTGAATTCTTCTATGG
CCTGAGGTATGTTAGTTGTAACAGTACCAGCTTTAGGATTTGGCA
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