CX296321
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_GRATL (50S ribosomal protein L1, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl1 PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.372e-24 Identity = 51/90 (56.67%), Postives = 72/90 (80.00%), Query Frame = -3 Query: 274 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 543 P+PKAGTVT N+ I+EFK GK+EY+ D++GI+HIPFGK +F+ +DL IN + +SI+ N+P+G+KG YWKS +I S+MGPSI L+I+ Sbjct: 138 PSPKAGTVTHNLITTIKEFKAGKLEYKIDRSGILHIPFGKLNFNVEDLHINLITLQESIDRNRPQGSKGKYWKSVHINSTMGPSIPLDIQ 227
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROM4 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplA PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.791e-24 Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPK GTVT ++ AI+EFK GK+E+RADK GI+H+ FGKA F+ D LL N ++I+ NKP GAKG +WK+ YI S+MGPSI ++I + D Sbjct: 137 PNPKTGTVTADLVGAIKEFKAGKLEFRADKAGIIHVRFGKASFNADALLENLKTLQETIDRNKPSGAKGRFWKTLYITSTMGPSIEVDIAALQD 230
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_ODOSI (50S ribosomal protein L1, chloroplastic OS=Odontella sinensis GN=rpl1 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.791e-24 Identity = 49/93 (52.69%), Postives = 69/93 (74.19%), Query Frame = -3 Query: 265 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 543 P+PK+GTV+T + + EFKKGK EY+ADK G+VH+ FGK++F+ L+ N A KSIE N+P G KG Y+KS +IC++MGPSI+L++ L Sbjct: 138 PSPKSGTVSTTLTATLSEFKKGKFEYKADKAGVVHVSFGKSNFTHSQLMENLTALYKSIEQNRPSGVKGKYFKSLFICTTMGPSIQLDLNIFL 230
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNJB (50S ribosomal protein L1 OS=Synechococcus sp. GN=rplA PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.056e-24 Identity = 51/97 (52.58%), Postives = 72/97 (74.23%), Query Frame = -3 Query: 253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543 P+PK GTVT ++ QAI+EFK GK+EYRAD+TGIVH+ FGK F + LL N A +SI+ N+P GAKG YW++ ++ ++MGPSI ++I + + KL Sbjct: 138 PSPKGGTVTMDLAQAIKEFKAGKLEYRADRTGIVHLIFGKCKFPVEALLENLKAVQESIDRNRPSGAKGKYWRTLHVSATMGPSIEVDINALRELKL 234
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_PHATR (50S ribosomal protein L1, chloroplastic OS=Phaeodactylum tricornutum GN=rpl1 PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 3.991e-24 Identity = 48/90 (53.33%), Postives = 70/90 (77.78%), Query Frame = -3 Query: 274 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 543 P+PK+GTVT+ + + EFKKGK EY+ADKTGIVH+ FGK++F+ + L+ N A +SIE N+P G KG Y+KS IC++MGPS++L+++ Sbjct: 138 PSPKSGTVTSTLQSTLTEFKKGKFEYKADKTGIVHVNFGKSNFTNEQLVENLKALYQSIEQNRPSGVKGKYFKSVSICTTMGPSVKLDLE 227
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_GLOVI (50S ribosomal protein L1 OS=Gloeobacter violaceus GN=rplA PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.981e-23 Identity = 51/97 (52.58%), Postives = 70/97 (72.16%), Query Frame = -3 Query: 253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543 P+PK GTVT ++ AI EFK GK+E+RAD+TGIVHIPFGK F+ + L+ N + +I+ KP GAKG YW++ +I S+MGPSI ++I + D KL Sbjct: 138 PSPKGGTVTMDLVGAIREFKAGKLEFRADRTGIVHIPFGKVSFTPEALMDNLKSVQDAIDRAKPSGAKGRYWRTFHIKSTMGPSIEIDINALRDLKL 234
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THETH (50S ribosomal protein L1 OS=Thermus thermophilus GN=rplA PE=1 SV=3) HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22 Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPKAGTV NI + I E K G++E+R DKTG +H P GKA F + L N A I+++EA+KP+GAKG + +S Y+ ++MGPS+R+N Sbjct: 139 PNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRIN 226
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THET8 (50S ribosomal protein L1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rplA PE=1 SV=3) HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22 Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPKAGTV NI + I E K G++E+R DKTG +H P GKA F + L N A I+++EA+KP+GAKG + +S Y+ ++MGPS+R+N Sbjct: 139 PNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRIN 226
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THET2 (50S ribosomal protein L1 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rplA PE=1 SV=3) HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22 Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPKAGTV NI + I E K G++E+R DKTG +H P GKA F + L N A I+++EA+KP+GAKG + +S Y+ ++MGPS+R+N Sbjct: 139 PNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRIN 226
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THESQ (50S ribosomal protein L1 OS=Thermotoga sp. (strain RQ2) GN=rplA PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22 Identity = 47/93 (50.54%), Postives = 65/93 (69.89%), Query Frame = -3 Query: 265 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 543 P+PK+GTVT + +A++EFKKG++E R DKTG +HIP GK F + L N +AAIK I KP G KG + K A + S+MGP I+LN++ +L Sbjct: 139 PSPKSGTVTQEVAEAVKEFKKGRIEVRTDKTGNIHIPVGKRSFDNEKLKENIIAAIKQIMQMKPAGVKGQFIKKAVLSSTMGPGIKLNLQSLL 231 The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bpback to top |