CX296321
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SHESW (50S ribosomal protein L1 OS=Shewanella sp. (strain W3-18-1) GN=rplA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15 Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF+ L N A I +++ KP AKGVY K I ++MG + ++ Sbjct: 138 PNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTPVQLKENLEALISALKKAKPAVAKGVYVKKVSISTTMGAGVAVD 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SHEPC (50S ribosomal protein L1 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rplA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15 Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF+ L N A I +++ KP AKGVY K I ++MG + ++ Sbjct: 138 PNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTPVQLKENLEALISALKKAKPAVAKGVYVKKVSISTTMGAGVAVD 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SHEON (50S ribosomal protein L1 OS=Shewanella oneidensis GN=rplA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15 Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF+ L N A I +++ KP AKGVY K I ++MG + ++ Sbjct: 138 PNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTPVQLKENLEALISALKKAKPAVAKGVYVKKVSISTTMGAGVAVD 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ROSDO (50S ribosomal protein L1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rplA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15 Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = -3 Query: 271 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 543 PNPK GTVT ++ A++ K G+V+++A+K G+VH GK F E L+ N A + ++ KP GAKG Y K + S+MGP + + I++ Sbjct: 138 PNPKVGTVTMDVEAAVKAAKGGEVQFKAEKGGVVHAGVGKLSFDEAKLVENIRAFVGAVSKAKPTGAKGAYMKKIALSSTMGPGVSVAIED 228
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_RHOSK (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rplA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = -3 Query: 277 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 543 PNPK GTVT ++ A+E K G+V+++ +K G++H GK F D L N A + ++ KP GAKG Y K + S+MGP + +++ Sbjct: 138 PNPKVGTVTMDVKSAVEAAKGGEVQFKVEKAGVIHAGVGKMSFEADKLAQNVRAFVDAVNRAKPAGAKGTYLKKVSLSSTMGPGVSVDL 226
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_RHOS4 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = -3 Query: 277 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 543 PNPK GTVT ++ A+E K G+V+++ +K G++H GK F D L N A + ++ KP GAKG Y K + S+MGP + +++ Sbjct: 138 PNPKVGTVTMDVKSAVEAAKGGEVQFKVEKAGVIHAGVGKMSFEADKLAQNVRAFVDAVNRAKPAGAKGTYLKKVSLSSTMGPGVSVDL 226
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_RHOS1 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rplA1 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = -3 Query: 277 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 543 PNPK GTVT ++ A+E K G+V+++ +K G++H GK F D L N A + ++ KP GAKG Y K + S+MGP + +++ Sbjct: 138 PNPKVGTVTMDVKSAVEAAKGGEVQFKVEKAGVIHAGVGKMSFEADKLAQNVRAFVDAVNRAKPAGAKGTYLKKVSLSSTMGPGVSVDL 226
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PHOPR (50S ribosomal protein L1 OS=Photobacterium profundum GN=rplA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15 Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVT N+ QA++ K G+V YR DK GI+H GK DF L N + + +++ +KP AKG++ K I ++MG + L+ Sbjct: 138 PNPKVGTVTPNVAQAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDAAQLKENLESLLVALKKSKPSSAKGIFIKKISISTTMGAGVSLD 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_MYCAP (50S ribosomal protein L1 OS=Mycoplasma agalactiae (strain PG2) GN=rplA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15 Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = -3 Query: 271 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 543 PNPK GTVT +A+EE KKGK YR DK G+VH GK + L+ N I I+ KP KG Y ++ + ++MGP +++ I++ Sbjct: 141 PNPKTGTVTPTPEKAVEELKKGKANYRTDKAGVVHTLVGKVSMDTEKLVENIKTVISLIKRLKPSAVKGTYIQNIVLSATMGPGVKVKIEK 231
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_LISW6 (50S ribosomal protein L1 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15 Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVT ++ +A+ E K GKVEYR DK G VH GK F L+ NF ++ KP AKG Y K+ + ++ GP I+++ Sbjct: 138 PNPKTGTVTMDVTKAVNEIKAGKVEYRVDKAGNVHAAIGKVSFDAAKLVENFRTVNDVLQKAKPAAAKGTYVKNLSVTTTFGPGIKVD 225 The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bpback to top |