CX296321

Overview
NameCX296321
Unique NameCX296321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SHESW (50S ribosomal protein L1 OS=Shewanella sp. (strain W3-18-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF+   L  N  A I +++  KP  AKGVY K   I ++MG  + ++
Sbjct:  138 PNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTPVQLKENLEALISALKKAKPAVAKGVYVKKVSISTTMGAGVAVD 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SHEPC (50S ribosomal protein L1 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF+   L  N  A I +++  KP  AKGVY K   I ++MG  + ++
Sbjct:  138 PNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTPVQLKENLEALISALKKAKPAVAKGVYVKKVSISTTMGAGVAVD 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SHEON (50S ribosomal protein L1 OS=Shewanella oneidensis GN=rplA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF+   L  N  A I +++  KP  AKGVY K   I ++MG  + ++
Sbjct:  138 PNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFTPVQLKENLEALISALKKAKPAVAKGVYVKKVSISTTMGAGVAVD 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ROSDO (50S ribosomal protein L1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = -3
Query:  271 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 543
            PNPK GTVT ++  A++  K G+V+++A+K G+VH   GK  F E  L+ N  A + ++   KP GAKG Y K   + S+MGP + + I++
Sbjct:  138 PNPKVGTVTMDVEAAVKAAKGGEVQFKAEKGGVVHAGVGKLSFDEAKLVENIRAFVGAVSKAKPTGAKGAYMKKIALSSTMGPGVSVAIED 228          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_RHOSK (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  277 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 543
            PNPK GTVT ++  A+E  K G+V+++ +K G++H   GK  F  D L  N  A + ++   KP GAKG Y K   + S+MGP + +++
Sbjct:  138 PNPKVGTVTMDVKSAVEAAKGGEVQFKVEKAGVIHAGVGKMSFEADKLAQNVRAFVDAVNRAKPAGAKGTYLKKVSLSSTMGPGVSVDL 226          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_RHOS4 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  277 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 543
            PNPK GTVT ++  A+E  K G+V+++ +K G++H   GK  F  D L  N  A + ++   KP GAKG Y K   + S+MGP + +++
Sbjct:  138 PNPKVGTVTMDVKSAVEAAKGGEVQFKVEKAGVIHAGVGKMSFEADKLAQNVRAFVDAVNRAKPAGAKGTYLKKVSLSSTMGPGVSVDL 226          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_RHOS1 (50S ribosomal protein L1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rplA1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = -3
Query:  277 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 543
            PNPK GTVT ++  A+E  K G+V+++ +K G++H   GK  F  D L  N  A + ++   KP GAKG Y K   + S+MGP + +++
Sbjct:  138 PNPKVGTVTMDVKSAVEAAKGGEVQFKVEKAGVIHAGVGKMSFEADKLAQNVRAFVDAVNRAKPAGAKGTYLKKVSLSSTMGPGVSVDL 226          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PHOPR (50S ribosomal protein L1 OS=Photobacterium profundum GN=rplA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT N+ QA++  K G+V YR DK GI+H   GK DF    L  N  + + +++ +KP  AKG++ K   I ++MG  + L+
Sbjct:  138 PNPKVGTVTPNVAQAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDAAQLKENLESLLVALKKSKPSSAKGIFIKKISISTTMGAGVSLD 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_MYCAP (50S ribosomal protein L1 OS=Mycoplasma agalactiae (strain PG2) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = -3
Query:  271 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 543
            PNPK GTVT    +A+EE KKGK  YR DK G+VH   GK     + L+ N    I  I+  KP   KG Y ++  + ++MGP +++ I++
Sbjct:  141 PNPKTGTVTPTPEKAVEELKKGKANYRTDKAGVVHTLVGKVSMDTEKLVENIKTVISLIKRLKPSAVKGTYIQNIVLSATMGPGVKVKIEK 231          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_LISW6 (50S ribosomal protein L1 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A+ E K GKVEYR DK G VH   GK  F    L+ NF      ++  KP  AKG Y K+  + ++ GP I+++
Sbjct:  138 PNPKTGTVTMDVTKAVNEIKAGKVEYRVDKAGNVHAAIGKVSFDAAKLVENFRTVNDVLQKAKPAAAKGTYVKNLSVTTTFGPGIKVD 225          
The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_SHESW4.423e-1544.3250S ribosomal protein L1 OS=Shewanella sp. (strain... [more]
RL1_SHEPC4.423e-1544.3250S ribosomal protein L1 OS=Shewanella putrefacien... [more]
RL1_SHEON4.423e-1544.3250S ribosomal protein L1 OS=Shewanella oneidensis ... [more]
RL1_ROSDO4.423e-1540.6650S ribosomal protein L1 OS=Roseobacter denitrific... [more]
RL1_RHOSK4.423e-1539.3350S ribosomal protein L1 OS=Rhodobacter sphaeroide... [more]
RL1_RHOS44.423e-1539.3350S ribosomal protein L1 OS=Rhodobacter sphaeroide... [more]
RL1_RHOS14.423e-1539.3350S ribosomal protein L1 OS=Rhodobacter sphaeroide... [more]
RL1_PHOPR4.423e-1542.0550S ribosomal protein L1 OS=Photobacterium profund... [more]
RL1_MYCAP4.423e-1540.6650S ribosomal protein L1 OS=Mycoplasma agalactiae ... [more]
RL1_LISW64.423e-1543.1850S ribosomal protein L1 OS=Listeria welshimeri se... [more]

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Properties
Property NameValue
Genbank descriptionC05138G11SK FerrChloL1 Citrus clementina cDNA clone C05138G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bp
GCGAGGCCTCGTGCCGAATTCGCACGAGGTTCAGTACGGAAAAAAGCCAT
GCGGTATGCATTTTTCCTTTTTTTTTTATTTGCTACAATCTCATCCACAT
TGATAATCTAGATCTCCTCACCTCACCATAATTCGCTCTCCTACAACTTT
TGCCAAGCAGTGGCAAGCCCTGGCATGGGTATCAAAGAGGCTGACTGAAC
AGTTAAAGATATCATTTACAAAATTTAGTTATGTCGTTTAGAAATTTGAT
GGAAGCTTGTAATCGAGCATTTCTTTTATGTTTAATCGAATGGAAGGTCC
CATTGATGAGCAAATGTAAGCACTTTTCCAGTACACTCCTTTGGCCCCTT
TTGGCTTGTTTGCTTCAATTGATTTAATAGCAGCAAGGAAGTTTATGAGG
AGGTCATCTTCAGAAAAATCAGCTTTCCCAAAAGGTATGTGGACAATCCC
AGTTTTATCTGCTCTATATTCAACTTTTCCCTTCTTGAATTCTTCTATGG
CCTGAGGTATGTTAGTTGTAACAGTACCAGCTTTAGGATTTGGCA
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