CX296321

Overview
NameCX296321
Unique NameCX296321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_LACDB (50S ribosomal protein L1 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT +  +A++  K G+VEYR D+   +H   GK  F+E+ L  NF A   +I   KP  AKG Y KS  + ++ GP I+L+
Sbjct:  138 PNPKTGTVTMDTAKAVQNVKAGQVEYRVDRQASIHTAIGKVSFTEEQLTENFRALQNAILRAKPASAKGQYIKSCAVAATFGPGIKLD 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_LACDA (50S ribosomal protein L1 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT +  +A++  K G+VEYR D+   +H   GK  F+E+ L  NF A   +I   KP  AKG Y KS  + ++ GP I+L+
Sbjct:  138 PNPKTGTVTMDTAKAVQNVKAGQVEYRVDRQASIHTAIGKVSFTEEQLTENFRALQNAILRAKPASAKGQYIKSCAVAATFGPGIKLD 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_DESDG (50S ribosomal protein L1 OS=Desulfovibrio desulfuricans (strain G20) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15
Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PN K GTVT ++ +A+ E K G+VE++ DK G++H P GK  F    +  N  A + +++  KP  AKG Y K+  + ++MGP  +++
Sbjct:  138 PNAKTGTVTFDVAKAVSEVKAGRVEFKVDKAGVLHAPLGKVSFGPQKIAENLKALLDTVQRLKPSSAKGTYMKTMSVSTTMGPGFKVD 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_DESDA (50S ribosomal protein L1 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15
Identity = 34/92 (36.96%), Postives = 58/92 (63.04%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PN K G+VT ++ +A+ E K G+V+++ DK G++H P GKA F  + +L N  A + ++   KP  AKG Y  S  I ++MGP  ++++ ++
Sbjct:  138 PNAKTGSVTFDVAKAVSELKAGRVDFKVDKAGVLHAPLGKASFGPEKILGNLKALLDTVNRLKPSSAKGTYLISMAISTTMGPGFKVDMTQV 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CHLPN (50S ribosomal protein L1 OS=Chlamydia pneumoniae GN=rplA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15
Identity = 37/93 (39.78%), Postives = 57/93 (61.29%), Query Frame = -3
Query:  265 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 543
            P PK GTVTT++ +AI E +KGK+E++AD+ G+ ++  GK  F    +  N  A   ++   KP  AKG Y  S  I S+MGP I ++ +E++
Sbjct:  138 PTPKTGTVTTDVAKAISELRKGKIEFKADRAGVCNVGVGKLSFESSQIKENIEALSSALIKAKPPAAKGQYLVSFTISSTMGPGISIDTRELM 230          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ALISL (50S ribosomal protein L1 OS=Aliivibrio salmonicida (strain LFI1238) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT N+ QA++  K G+V YR DK GI+H   GK DF    L  N  + + +++  KP  AKGV+ K   I ++MG  + L+
Sbjct:  138 PNPKVGTVTPNVAQAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDGAQLKENLESLLVALKKAKPTSAKGVFLKKVSISTTMGAGVSLD 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ACTSZ (50S ribosomal protein L1 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rplA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT N+ +A++  K G+V YR DK GI+H   GKA FSE+ L  N  A + ++   +P  AKG++ K   + ++ G  ++++
Sbjct:  138 PNPKVGTVTPNVAEAVKNAKSGQVRYRNDKNGIIHTTIGKASFSEEQLKENLQALLAALAKARPTTAKGIFIKKVSVSTTQGAGVQVD 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_YERE8 (50S ribosomal protein L1 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=rplA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF  + L  N  + + +++  KP  AKGVY K   + ++MG  + ++
Sbjct:  138 PNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDSEKLKENLESLVVALKRAKPATAKGVYIKKISLSTTMGAGVAID 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_VIBCM (50S ribosomal protein L1 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT N+ +A++  K G+V YR DK GI+H   GK  F  D L  N  A + +++  KP  AKGV+ K   I ++MG  + ++
Sbjct:  138 PNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVTFEADQLKENLEALLVALKKAKPSSAKGVFVKKVSISTTMGAGVAVD 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_VIBCH (50S ribosomal protein L1 OS=Vibrio cholerae GN=rplA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT N+ +A++  K G+V YR DK GI+H   GK  F  D L  N  A + +++  KP  AKGV+ K   I ++MG  + ++
Sbjct:  138 PNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVTFEADQLKENLEALLVALKKAKPSSAKGVFVKKVSISTTMGAGVAVD 225          
The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_LACDB7.544e-1543.1850S ribosomal protein L1 OS=Lactobacillus delbruec... [more]
RL1_LACDA7.544e-1543.1850S ribosomal protein L1 OS=Lactobacillus delbruec... [more]
RL1_DESDG7.544e-1537.5050S ribosomal protein L1 OS=Desulfovibrio desulfur... [more]
RL1_DESDA7.544e-1536.9650S ribosomal protein L1 OS=Desulfovibrio desulfur... [more]
RL1_CHLPN7.544e-1539.7850S ribosomal protein L1 OS=Chlamydia pneumoniae G... [more]
RL1_ALISL7.544e-1543.1850S ribosomal protein L1 OS=Aliivibrio salmonicida... [more]
RL1_ACTSZ7.544e-1539.7750S ribosomal protein L1 OS=Actinobacillus succino... [more]
RL1_YERE89.853e-1540.9150S ribosomal protein L1 OS=Yersinia enterocolitic... [more]
RL1_VIBCM9.853e-1542.0550S ribosomal protein L1 OS=Vibrio cholerae seroty... [more]
RL1_VIBCH9.853e-1542.0550S ribosomal protein L1 OS=Vibrio cholerae GN=rpl... [more]

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Properties
Property NameValue
Genbank descriptionC05138G11SK FerrChloL1 Citrus clementina cDNA clone C05138G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bp
GCGAGGCCTCGTGCCGAATTCGCACGAGGTTCAGTACGGAAAAAAGCCAT
GCGGTATGCATTTTTCCTTTTTTTTTTATTTGCTACAATCTCATCCACAT
TGATAATCTAGATCTCCTCACCTCACCATAATTCGCTCTCCTACAACTTT
TGCCAAGCAGTGGCAAGCCCTGGCATGGGTATCAAAGAGGCTGACTGAAC
AGTTAAAGATATCATTTACAAAATTTAGTTATGTCGTTTAGAAATTTGAT
GGAAGCTTGTAATCGAGCATTTCTTTTATGTTTAATCGAATGGAAGGTCC
CATTGATGAGCAAATGTAAGCACTTTTCCAGTACACTCCTTTGGCCCCTT
TTGGCTTGTTTGCTTCAATTGATTTAATAGCAGCAAGGAAGTTTATGAGG
AGGTCATCTTCAGAAAAATCAGCTTTCCCAAAAGGTATGTGGACAATCCC
AGTTTTATCTGCTCTATATTCAACTTTTCCCTTCTTGAATTCTTCTATGG
CCTGAGGTATGTTAGTTGTAACAGTACCAGCTTTAGGATTTGGCA
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