CX296321
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_VIBC3 (50S ribosomal protein L1 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rplA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15 Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVT N+ +A++ K G+V YR DK GI+H GK F D L N A + +++ KP AKGV+ K I ++MG + ++ Sbjct: 138 PNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVTFEADQLKENLEALLVALKKAKPSSAKGVFVKKVSISTTMGAGVAVD 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STRTD (50S ribosomal protein L1 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rplA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15 Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVT ++ +A+EE K GK+ YRADK G V GK F + L+ NF A +I+ KP AKGVY + I ++ GP I+++ Sbjct: 138 PNPKTGTVTMDVAKAVEESKGGKITYRADKAGNVQAIIGKVSFEAEKLVENFKAFNDAIQKAKPATAKGVYITNLSITTTQGPGIKVD 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STRT2 (50S ribosomal protein L1 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rplA PE=3 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15 Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVT ++ +A+EE K GK+ YRADK G V GK F + L+ NF A +I+ KP AKGVY + I ++ GP I+++ Sbjct: 138 PNPKTGTVTMDVAKAVEESKGGKITYRADKAGNVQAIIGKVSFEAEKLVENFKAFNDAIQKAKPATAKGVYITNLSITTTQGPGIKVD 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STRT1 (50S ribosomal protein L1 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rplA PE=3 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15 Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVT ++ +A+EE K GK+ YRADK G V GK F + L+ NF A +I+ KP AKGVY + I ++ GP I+++ Sbjct: 138 PNPKTGTVTMDVAKAVEESKGGKITYRADKAGNVQAIIGKVSFEAEKLVENFKAFNDAIQKAKPATAKGVYITNLSITTTQGPGIKVD 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STRSY (50S ribosomal protein L1 OS=Streptococcus suis (strain 05ZYH33) GN=rplA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15 Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVT ++ +A+EE K GK+ YRADK GIV GK F D L+ NF A + KP AKG Y S +I ++ G I+++ Sbjct: 138 PNPKTGTVTMDVAKAVEESKGGKITYRADKAGIVQALIGKVSFDADKLVENFKAFHDVMAKAKPATAKGTYMTSVFITTTQGVGIKVD 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SHEHH (50S ribosomal protein L1 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rplA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15 Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = -3 Query: 256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543 PNPK GTVT N+ +A++ K G+V YR DK GI+H GK DF L N A + +++ KP AKGV+ K I ++MG + ++ + D K Sbjct: 138 PNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFEPAQLKENLEALLGALKKAKPAAAKGVFIKKVSISTTMGAGVAVDQGTLEDAK 233
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_RHOFD (50S ribosomal protein L1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rplA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15 Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = -3 Query: 268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543 PNPK GTVT ++ A++ K G+V++R DK GIVH G+ F D L N A + ++ KP +KGVY K + S+MG IR++++ + Sbjct: 138 PNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGIVHSTIGRRSFDTDKLQGNLAALVDALTKAKPATSKGVYLKKVAVSSTMGVGIRVDLQSI 229
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_RHOBA (50S ribosomal protein L1 OS=Rhodopirellula baltica GN=rplA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15 Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = -3 Query: 283 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 543 P+P+AGTVT ++ + + E+K GKVE+R DK G VH GK F + L N + + I A KP+ KG Y K IC++M PS+R+ Sbjct: 137 PSPRAGTVTPDVGKVVSEYKAGKVEFRNDKGGNVHAMVGKMSFEANKLEENIASFVDFISAMKPQSIKGTYIKGVAICATMTPSVRV 223
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_RHILO (50S ribosomal protein L1 OS=Rhizobium loti GN=rplA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15 Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = -3 Query: 268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543 PNPK GTVTT++ A++ K G VE+R +K GIVH GK F L N A ++ KP GAKG Y K + S+MGP ++L++ + Sbjct: 138 PNPKVGTVTTDVAAAVKASKGGAVEFRVEKAGIVHAGVGKVSFDVKALEENIRAFADAVTKAKPAGAKGNYVKKVSVTSTMGPGLKLDVSTL 229
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_POLNS (50S ribosomal protein L1 OS=Polynucleobacter necessarius (strain STIR1) GN=rplA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15 Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVT ++ A++ K G+V++R DK GIVH G+ F L N LA ++++ KP +KGVY K + S+MG +R++ Sbjct: 138 PNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGIVHASIGRRSFEPTALKSNLLALLEALNKAKPPASKGVYLKKVAVSSTMGAGVRVD 225 The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bpback to top |