CX296321

Overview
NameCX296321
Unique NameCX296321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_VIBC3 (50S ribosomal protein L1 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rplA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT N+ +A++  K G+V YR DK GI+H   GK  F  D L  N  A + +++  KP  AKGV+ K   I ++MG  + ++
Sbjct:  138 PNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVTFEADQLKENLEALLVALKKAKPSSAKGVFVKKVSISTTMGAGVAVD 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STRTD (50S ribosomal protein L1 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rplA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A+EE K GK+ YRADK G V    GK  F  + L+ NF A   +I+  KP  AKGVY  +  I ++ GP I+++
Sbjct:  138 PNPKTGTVTMDVAKAVEESKGGKITYRADKAGNVQAIIGKVSFEAEKLVENFKAFNDAIQKAKPATAKGVYITNLSITTTQGPGIKVD 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STRT2 (50S ribosomal protein L1 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rplA PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A+EE K GK+ YRADK G V    GK  F  + L+ NF A   +I+  KP  AKGVY  +  I ++ GP I+++
Sbjct:  138 PNPKTGTVTMDVAKAVEESKGGKITYRADKAGNVQAIIGKVSFEAEKLVENFKAFNDAIQKAKPATAKGVYITNLSITTTQGPGIKVD 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STRT1 (50S ribosomal protein L1 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rplA PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A+EE K GK+ YRADK G V    GK  F  + L+ NF A   +I+  KP  AKGVY  +  I ++ GP I+++
Sbjct:  138 PNPKTGTVTMDVAKAVEESKGGKITYRADKAGNVQAIIGKVSFEAEKLVENFKAFNDAIQKAKPATAKGVYITNLSITTTQGPGIKVD 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STRSY (50S ribosomal protein L1 OS=Streptococcus suis (strain 05ZYH33) GN=rplA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A+EE K GK+ YRADK GIV    GK  F  D L+ NF A    +   KP  AKG Y  S +I ++ G  I+++
Sbjct:  138 PNPKTGTVTMDVAKAVEESKGGKITYRADKAGIVQALIGKVSFDADKLVENFKAFHDVMAKAKPATAKGTYMTSVFITTTQGVGIKVD 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SHEHH (50S ribosomal protein L1 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rplA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = -3
Query:  256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543
            PNPK GTVT N+ +A++  K G+V YR DK GI+H   GK DF    L  N  A + +++  KP  AKGV+ K   I ++MG  + ++   + D K
Sbjct:  138 PNPKTGTVTPNVAEAVKNAKAGQVRYRNDKNGIIHTTIGKVDFEPAQLKENLEALLGALKKAKPAAAKGVFIKKVSISTTMGAGVAVDQGTLEDAK 233          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_RHOFD (50S ribosomal protein L1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rplA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 37/92 (40.22%), Postives = 56/92 (60.87%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPK GTVT ++  A++  K G+V++R DK GIVH   G+  F  D L  N  A + ++   KP  +KGVY K   + S+MG  IR++++ +
Sbjct:  138 PNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGIVHSTIGRRSFDTDKLQGNLAALVDALTKAKPATSKGVYLKKVAVSSTMGVGIRVDLQSI 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_RHOBA (50S ribosomal protein L1 OS=Rhodopirellula baltica GN=rplA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = -3
Query:  283 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 543
            P+P+AGTVT ++ + + E+K GKVE+R DK G VH   GK  F  + L  N  + +  I A KP+  KG Y K   IC++M PS+R+
Sbjct:  137 PSPRAGTVTPDVGKVVSEYKAGKVEFRNDKGGNVHAMVGKMSFEANKLEENIASFVDFISAMKPQSIKGTYIKGVAICATMTPSVRV 223          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_RHILO (50S ribosomal protein L1 OS=Rhizobium loti GN=rplA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPK GTVTT++  A++  K G VE+R +K GIVH   GK  F    L  N  A   ++   KP GAKG Y K   + S+MGP ++L++  +
Sbjct:  138 PNPKVGTVTTDVAAAVKASKGGAVEFRVEKAGIVHAGVGKVSFDVKALEENIRAFADAVTKAKPAGAKGNYVKKVSVTSTMGPGLKLDVSTL 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_POLNS (50S ribosomal protein L1 OS=Polynucleobacter necessarius (strain STIR1) GN=rplA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++  A++  K G+V++R DK GIVH   G+  F    L  N LA ++++   KP  +KGVY K   + S+MG  +R++
Sbjct:  138 PNPKVGTVTPDVATAVKNAKAGQVQFRVDKAGIVHASIGRRSFEPTALKSNLLALLEALNKAKPPASKGVYLKKVAVSSTMGAGVRVD 225          
The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_VIBC39.853e-1542.0550S ribosomal protein L1 OS=Vibrio cholerae seroty... [more]
RL1_STRTD9.853e-1545.4550S ribosomal protein L1 OS=Streptococcus thermoph... [more]
RL1_STRT29.853e-1545.4550S ribosomal protein L1 OS=Streptococcus thermoph... [more]
RL1_STRT19.853e-1545.4550S ribosomal protein L1 OS=Streptococcus thermoph... [more]
RL1_STRSY9.853e-1545.4550S ribosomal protein L1 OS=Streptococcus suis (st... [more]
RL1_SHEHH9.853e-1540.6350S ribosomal protein L1 OS=Shewanella halifaxensi... [more]
RL1_RHOFD9.853e-1540.2250S ribosomal protein L1 OS=Rhodoferax ferrireduce... [more]
RL1_RHOBA9.853e-1543.6850S ribosomal protein L1 OS=Rhodopirellula baltica... [more]
RL1_RHILO9.853e-1542.3950S ribosomal protein L1 OS=Rhizobium loti GN=rplA... [more]
RL1_POLNS9.853e-1540.9150S ribosomal protein L1 OS=Polynucleobacter neces... [more]

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Properties
Property NameValue
Genbank descriptionC05138G11SK FerrChloL1 Citrus clementina cDNA clone C05138G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bp
GCGAGGCCTCGTGCCGAATTCGCACGAGGTTCAGTACGGAAAAAAGCCAT
GCGGTATGCATTTTTCCTTTTTTTTTTATTTGCTACAATCTCATCCACAT
TGATAATCTAGATCTCCTCACCTCACCATAATTCGCTCTCCTACAACTTT
TGCCAAGCAGTGGCAAGCCCTGGCATGGGTATCAAAGAGGCTGACTGAAC
AGTTAAAGATATCATTTACAAAATTTAGTTATGTCGTTTAGAAATTTGAT
GGAAGCTTGTAATCGAGCATTTCTTTTATGTTTAATCGAATGGAAGGTCC
CATTGATGAGCAAATGTAAGCACTTTTCCAGTACACTCCTTTGGCCCCTT
TTGGCTTGTTTGCTTCAATTGATTTAATAGCAGCAAGGAAGTTTATGAGG
AGGTCATCTTCAGAAAAATCAGCTTTCCCAAAAGGTATGTGGACAATCCC
AGTTTTATCTGCTCTATATTCAACTTTTCCCTTCTTGAATTCTTCTATGG
CCTGAGGTATGTTAGTTGTAACAGTACCAGCTTTAGGATTTGGCA
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