CX296321
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_DICTD (50S ribosomal protein L1 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplA PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22 Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPK GTVT +I +A++E+K G+VE+R D+ GIVH+P GKA FSE+ L N + + ++ KP AKG Y+KS YI SMGPS+ ++ K + D Sbjct: 141 PNPKTGTVTNDIAKAVKEYKAGRVEFRTDRYGIVHVPIGKASFSEEALYKNLMTVLGTLLRLKPAAAKGQYFKSIYISPSMGPSVPIDTKNIAD 234
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_DICT6 (50S ribosomal protein L1 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplA PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22 Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPK GTVT +I +A++E+K G+VE+R D+ GIVH+P GKA FSE+ L N + + ++ KP AKG Y+KS YI SMGPS+ ++ K + D Sbjct: 141 PNPKTGTVTNDIAKAVKEYKAGRVEFRTDRYGIVHVPIGKASFSEEALYKNLMTVLGTLLRLKPAAAKGQYFKSIYISPSMGPSVPIDTKNIAD 234
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THEMA (50S ribosomal protein L1 OS=Thermotoga maritima GN=rplA PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.854e-21 Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = -3 Query: 265 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 543 P+PK+GTVT + +A++EFKKG++E R DKTG +HIP GK F + L N +AAIK I KP G KG + K + S+MGP I+LN++ +L Sbjct: 139 PSPKSGTVTQEVAEAVKEFKKGRIEVRTDKTGNIHIPVGKRSFDNEKLKENIIAAIKQIMQMKPAGVKGQFIKKVVLASTMGPGIKLNLQSLL 231
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THENN (50S ribosomal protein L1 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplA PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.421e-21 Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 P+PK+GTVT + +A++EFKKG++E R DKTG +HIP GK F + + N ++AIK I KP G KG + K A + S+MGP I+LN++ +L+ Sbjct: 139 PSPKSGTVTNEVAEAVKEFKKGRIEVRTDKTGNIHIPVGKKSFDNEKIKENVISAIKQIMQMKPAGVKGQFIKKAVLASTMGPGIKLNLQSILN 232
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_LYSSC (50S ribosomal protein L1 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplA PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.421e-21 Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVT ++ +AIEE K GKVEYRADK GI+H P GK FS L+ NFLA ++ KP AKG Y KS I ++MGP+++++ Sbjct: 138 PNPKTGTVTFDVTKAIEEIKAGKVEYRADKAGIIHAPIGKVSFSAAKLVENFLAVFDVVQKAKPAAAKGTYMKSVNITTTMGPAVKID 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ALKMQ (50S ribosomal protein L1 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplA PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 2.421e-21 Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK+GTVT ++ +A++E K GKVEYR DKT I+H+P GKA F E L NF ++++ KP AKG Y+KS + S+MGP IR+N Sbjct: 139 PNPKSGTVTFDLERAVKEIKAGKVEYRLDKTNIIHVPIGKASFEEAQLAENFKTLLEAVAKAKPAAAKGQYFKSVSVTSTMGPGIRVN 226
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THEPX (50S ribosomal protein L1 OS=Thermoanaerobacter sp. (strain X514) GN=rplA PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 5.394e-21 Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK+GTVT ++ +AI+E K GK+EYR DK GI+H+P GK F ++ LL NF A + +I +KP AKG Y KS + S+MGP +++N Sbjct: 138 PNPKSGTVTFDLEKAIKEIKAGKIEYRVDKAGIIHVPIGKKSFGKEKLLENFRAVMDAIIKSKPAAAKGQYIKSVVLSSTMGPGVKVN 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THEP1 (50S ribosomal protein L1 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplA PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 5.394e-21 Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = -3 Query: 265 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 543 P+PK+GTVT + +A++EFKKG++E R DKTG +HIP GK F + L N ++A++ I KP G KG + K A + S+MGP I+LN++ +L Sbjct: 139 PSPKSGTVTQEVAEAVKEFKKGRIEVRTDKTGNIHIPVGKRSFDNEKLKENIISAVRQIMQMKPAGVKGQFIKKAVLSSTMGPGIKLNLQSLL 231
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOK5 (50S ribosomal protein L1 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rplA PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 5.394e-21 Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPK+GTVT ++ +AI+E K GKVEYR DKT IVH+P GK F LL NF +++I KP AKG Y KS + S+MGP I++N ++L+ Sbjct: 136 PNPKSGTVTFDVAKAIQEIKAGKVEYRVDKTSIVHVPIGKKSFEVQKLLDNFRVLMEAIIKAKPSAAKGQYLKSVAVSSTMGPGIKINSVKVLE 229
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOK1 (50S ribosomal protein L1 OS=Clostridium kluyveri (strain NBRC 12016) GN=rplA PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 5.394e-21 Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPK+GTVT ++ +AI+E K GKVEYR DKT IVH+P GK F LL NF +++I KP AKG Y KS + S+MGP I++N ++L+ Sbjct: 138 PNPKSGTVTFDVAKAIQEIKAGKVEYRVDKTSIVHVPIGKKSFEVQKLLDNFRVLMEAIIKAKPSAAKGQYLKSVAVSSTMGPGIKINSVKVLE 231 The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bpback to top |