CX296321

Overview
NameCX296321
Unique NameCX296321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_DICTD (50S ribosomal protein L1 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK GTVT +I +A++E+K G+VE+R D+ GIVH+P GKA FSE+ L  N +  + ++   KP  AKG Y+KS YI  SMGPS+ ++ K + D
Sbjct:  141 PNPKTGTVTNDIAKAVKEYKAGRVEFRTDRYGIVHVPIGKASFSEEALYKNLMTVLGTLLRLKPAAAKGQYFKSIYISPSMGPSVPIDTKNIAD 234          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_DICT6 (50S ribosomal protein L1 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.322e-22
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK GTVT +I +A++E+K G+VE+R D+ GIVH+P GKA FSE+ L  N +  + ++   KP  AKG Y+KS YI  SMGPS+ ++ K + D
Sbjct:  141 PNPKTGTVTNDIAKAVKEYKAGRVEFRTDRYGIVHVPIGKASFSEEALYKNLMTVLGTLLRLKPAAAKGQYFKSIYISPSMGPSVPIDTKNIAD 234          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THEMA (50S ribosomal protein L1 OS=Thermotoga maritima GN=rplA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.854e-21
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = -3
Query:  265 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 543
            P+PK+GTVT  + +A++EFKKG++E R DKTG +HIP GK  F  + L  N +AAIK I   KP G KG + K   + S+MGP I+LN++ +L
Sbjct:  139 PSPKSGTVTQEVAEAVKEFKKGRIEVRTDKTGNIHIPVGKRSFDNEKLKENIIAAIKQIMQMKPAGVKGQFIKKVVLASTMGPGIKLNLQSLL 231          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THENN (50S ribosomal protein L1 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.421e-21
Identity = 45/94 (47.87%), Postives = 66/94 (70.21%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            P+PK+GTVT  + +A++EFKKG++E R DKTG +HIP GK  F  + +  N ++AIK I   KP G KG + K A + S+MGP I+LN++ +L+
Sbjct:  139 PSPKSGTVTNEVAEAVKEFKKGRIEVRTDKTGNIHIPVGKKSFDNEKIKENVISAIKQIMQMKPAGVKGQFIKKAVLASTMGPGIKLNLQSILN 232          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_LYSSC (50S ribosomal protein L1 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.421e-21
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +AIEE K GKVEYRADK GI+H P GK  FS   L+ NFLA    ++  KP  AKG Y KS  I ++MGP+++++
Sbjct:  138 PNPKTGTVTFDVTKAIEEIKAGKVEYRADKAGIIHAPIGKVSFSAAKLVENFLAVFDVVQKAKPAAAKGTYMKSVNITTTMGPAVKID 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ALKMQ (50S ribosomal protein L1 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.421e-21
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK+GTVT ++ +A++E K GKVEYR DKT I+H+P GKA F E  L  NF   ++++   KP  AKG Y+KS  + S+MGP IR+N
Sbjct:  139 PNPKSGTVTFDLERAVKEIKAGKVEYRLDKTNIIHVPIGKASFEEAQLAENFKTLLEAVAKAKPAAAKGQYFKSVSVTSTMGPGIRVN 226          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THEPX (50S ribosomal protein L1 OS=Thermoanaerobacter sp. (strain X514) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.394e-21
Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK+GTVT ++ +AI+E K GK+EYR DK GI+H+P GK  F ++ LL NF A + +I  +KP  AKG Y KS  + S+MGP +++N
Sbjct:  138 PNPKSGTVTFDLEKAIKEIKAGKIEYRVDKAGIIHVPIGKKSFGKEKLLENFRAVMDAIIKSKPAAAKGQYIKSVVLSSTMGPGVKVN 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THEP1 (50S ribosomal protein L1 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.394e-21
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = -3
Query:  265 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 543
            P+PK+GTVT  + +A++EFKKG++E R DKTG +HIP GK  F  + L  N ++A++ I   KP G KG + K A + S+MGP I+LN++ +L
Sbjct:  139 PSPKSGTVTQEVAEAVKEFKKGRIEVRTDKTGNIHIPVGKRSFDNEKLKENIISAVRQIMQMKPAGVKGQFIKKAVLSSTMGPGIKLNLQSLL 231          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOK5 (50S ribosomal protein L1 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.394e-21
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK+GTVT ++ +AI+E K GKVEYR DKT IVH+P GK  F    LL NF   +++I   KP  AKG Y KS  + S+MGP I++N  ++L+
Sbjct:  136 PNPKSGTVTFDVAKAIQEIKAGKVEYRVDKTSIVHVPIGKKSFEVQKLLDNFRVLMEAIIKAKPSAAKGQYLKSVAVSSTMGPGIKINSVKVLE 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOK1 (50S ribosomal protein L1 OS=Clostridium kluyveri (strain NBRC 12016) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.394e-21
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK+GTVT ++ +AI+E K GKVEYR DKT IVH+P GK  F    LL NF   +++I   KP  AKG Y KS  + S+MGP I++N  ++L+
Sbjct:  138 PNPKSGTVTFDVAKAIQEIKAGKVEYRVDKTSIVHVPIGKKSFEVQKLLDNFRVLMEAIIKAKPSAAKGQYLKSVAVSSTMGPGIKINSVKVLE 231          
The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_DICTD8.322e-2250.0050S ribosomal protein L1 OS=Dictyoglomus turgidum ... [more]
RL1_DICT68.322e-2250.0050S ribosomal protein L1 OS=Dictyoglomus thermophi... [more]
RL1_THEMA1.854e-2149.4650S ribosomal protein L1 OS=Thermotoga maritima GN... [more]
RL1_THENN2.421e-2147.8750S ribosomal protein L1 OS=Thermotoga neapolitana... [more]
RL1_LYSSC2.421e-2153.4150S ribosomal protein L1 OS=Lysinibacillus sphaeri... [more]
RL1_ALKMQ2.421e-2152.2750S ribosomal protein L1 OS=Alkaliphilus metallire... [more]
RL1_THEPX5.394e-2151.1450S ribosomal protein L1 OS=Thermoanaerobacter sp.... [more]
RL1_THEP15.394e-2147.3150S ribosomal protein L1 OS=Thermotoga petrophila ... [more]
RL1_CLOK55.394e-2151.0650S ribosomal protein L1 OS=Clostridium kluyveri (... [more]
RL1_CLOK15.394e-2151.0650S ribosomal protein L1 OS=Clostridium kluyveri (... [more]

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Properties
Property NameValue
Genbank descriptionC05138G11SK FerrChloL1 Citrus clementina cDNA clone C05138G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bp
GCGAGGCCTCGTGCCGAATTCGCACGAGGTTCAGTACGGAAAAAAGCCAT
GCGGTATGCATTTTTCCTTTTTTTTTTATTTGCTACAATCTCATCCACAT
TGATAATCTAGATCTCCTCACCTCACCATAATTCGCTCTCCTACAACTTT
TGCCAAGCAGTGGCAAGCCCTGGCATGGGTATCAAAGAGGCTGACTGAAC
AGTTAAAGATATCATTTACAAAATTTAGTTATGTCGTTTAGAAATTTGAT
GGAAGCTTGTAATCGAGCATTTCTTTTATGTTTAATCGAATGGAAGGTCC
CATTGATGAGCAAATGTAAGCACTTTTCCAGTACACTCCTTTGGCCCCTT
TTGGCTTGTTTGCTTCAATTGATTTAATAGCAGCAAGGAAGTTTATGAGG
AGGTCATCTTCAGAAAAATCAGCTTTCCCAAAAGGTATGTGGACAATCCC
AGTTTTATCTGCTCTATATTCAACTTTTCCCTTCTTGAATTCTTCTATGG
CCTGAGGTATGTTAGTTGTAACAGTACCAGCTTTAGGATTTGGCA
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