CX296321
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THEP3 (50S ribosomal protein L1 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplA PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 7.045e-21 Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK+GTVT ++ +AI+E K GK+EYR DK GI+H+P GK F ++ LL NF A + +I +KP AKG Y KS + S+MGP +++N Sbjct: 138 PNPKSGTVTFDLEKAIKEIKAGKIEYRVDKAGIIHVPIGKKSFGKEKLLENFRAVMDAIIKSKPAAAKGQYIKSLVLSSTMGPGVKVN 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOB8 (50S ribosomal protein L1 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplA PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 9.200e-21 Identity = 49/94 (52.13%), Postives = 62/94 (65.96%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPK+GTVT ++ +AIEE K GKVEYR DKT IVH P GK F + L NF A ++++ KP AKG Y KS + S+MGPS ++N LD Sbjct: 136 PNPKSGTVTFDVAKAIEEIKAGKVEYRVDKTAIVHCPIGKKSFGTEKLKENFTALMEALVKAKPAAAKGQYLKSVSVSSTMGPSAKVNPTRALD 229
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ANASK (50S ribosomal protein L1 OS=Anaeromyxobacter sp. (strain K) GN=rplA PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 9.200e-21 Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = -3 Query: 268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543 PNPK GTVT ++ +A++E K GKVE+R +K GIVH+PFGKA F D L NF A ++ I KP+ AKGVY K+ + ++MGP I++++ E+ Sbjct: 138 PNPKVGTVTMDLARAVKEQKAGKVEFRVEKAGIVHVPFGKASFDPDKLKANFSAIMEVIYKAKPQTAKGVYVKNVTLSTTMGPGIKVDLAEL 229
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ANAD2 (50S ribosomal protein L1 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rplA PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 9.200e-21 Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = -3 Query: 268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543 PNPK GTVT ++ +A++E K GKVE+R +K GIVH+PFGKA F D L NF A ++ I KP+ AKGVY K+ + ++MGP I++++ E+ Sbjct: 138 PNPKVGTVTMDLARAVKEQKAGKVEFRVEKAGIVHVPFGKASFDPDKLKANFSAIMEVIYKAKPQTAKGVYVKNVTLSTTMGPGIKVDLAEL 229
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_DESHY (50S ribosomal protein L1 OS=Desulfitobacterium hafniense (strain Y51) GN=rplA PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20 Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVT ++ +A++E K GK+EYRADK GI+H P GK FSE+ L N+ ++++ KP AKG Y +S + S+MGP +R+N Sbjct: 138 PNPKTGTVTFDVAKAVKEIKAGKIEYRADKAGIIHAPIGKVSFSEEQLYQNYKVLVETLVKAKPAAAKGQYIRSVTVSSTMGPGVRIN 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_DESHD (50S ribosomal protein L1 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplA PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20 Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVT ++ +A++E K GK+EYRADK GI+H P GK FSE+ L N+ ++++ KP AKG Y +S + S+MGP +R+N Sbjct: 138 PNPKTGTVTFDVAKAVKEIKAGKIEYRADKAGIIHAPIGKVSFSEEQLYQNYKVLVETLVKAKPAAAKGQYIRSVTVSSTMGPGVRIN 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ANADF (50S ribosomal protein L1 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rplA PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20 Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = -3 Query: 268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543 PNPK GTV+ +I +A++E K GKVE+R +K GIVH+PFGKA F + L NF A ++ I KP+ AKGVY K+ + ++MGP I+L++ E+ Sbjct: 138 PNPKVGTVSADIARAVKEQKAGKVEFRVEKAGIVHVPFGKASFEPEKLKANFSAIMEIIYKAKPQTAKGVYVKNVTLSTTMGPGIKLDLSEL 229
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ANADE (50S ribosomal protein L1 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=rplA PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20 Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = -3 Query: 268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543 PNPK GTVT ++ +A++E K GKVE+R +K GIVH+PFGKA F + L NF A ++ I KP+ AKGVY K+ + ++MGP I+L++ E+ Sbjct: 138 PNPKVGTVTMDLARAVKEQKAGKVEFRVEKAGIVHVPFGKASFDPEKLKANFSAIMEVIYKAKPQTAKGVYVKNVTLSTTMGPGIKLDLAEL 229
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ALKOO (50S ribosomal protein L1 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplA PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20 Identity = 45/94 (47.87%), Postives = 64/94 (68.09%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPK+GTVT ++ +A+ E K GKVEYR DKT I+H+P GKA F E L+ NF + ++ KP AKG Y KS + S+MGP I++N ++++ Sbjct: 139 PNPKSGTVTFDLTKAVNEIKAGKVEYRLDKTNIIHVPLGKASFEETQLVENFRTLLDAVVKAKPAAAKGQYLKSITVTSTMGPGIKINPLKVME 232
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOBM (50S ribosomal protein L1 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplA PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20 Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK+ F E+ L NF ++++ KP AKG Y KS I S+MGP I++N ++L+ Sbjct: 136 PNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKSSFGEEKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229 The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bpback to top |