CX296321

Overview
NameCX296321
Unique NameCX296321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THEP3 (50S ribosomal protein L1 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.045e-21
Identity = 45/88 (51.14%), Postives = 63/88 (71.59%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK+GTVT ++ +AI+E K GK+EYR DK GI+H+P GK  F ++ LL NF A + +I  +KP  AKG Y KS  + S+MGP +++N
Sbjct:  138 PNPKSGTVTFDLEKAIKEIKAGKIEYRVDKAGIIHVPIGKKSFGKEKLLENFRAVMDAIIKSKPAAAKGQYIKSLVLSSTMGPGVKVN 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOB8 (50S ribosomal protein L1 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.200e-21
Identity = 49/94 (52.13%), Postives = 62/94 (65.96%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK+GTVT ++ +AIEE K GKVEYR DKT IVH P GK  F  + L  NF A ++++   KP  AKG Y KS  + S+MGPS ++N    LD
Sbjct:  136 PNPKSGTVTFDVAKAIEEIKAGKVEYRVDKTAIVHCPIGKKSFGTEKLKENFTALMEALVKAKPAAAKGQYLKSVSVSSTMGPSAKVNPTRALD 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ANASK (50S ribosomal protein L1 OS=Anaeromyxobacter sp. (strain K) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.200e-21
Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPK GTVT ++ +A++E K GKVE+R +K GIVH+PFGKA F  D L  NF A ++ I   KP+ AKGVY K+  + ++MGP I++++ E+
Sbjct:  138 PNPKVGTVTMDLARAVKEQKAGKVEFRVEKAGIVHVPFGKASFDPDKLKANFSAIMEVIYKAKPQTAKGVYVKNVTLSTTMGPGIKVDLAEL 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ANAD2 (50S ribosomal protein L1 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.200e-21
Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPK GTVT ++ +A++E K GKVE+R +K GIVH+PFGKA F  D L  NF A ++ I   KP+ AKGVY K+  + ++MGP I++++ E+
Sbjct:  138 PNPKVGTVTMDLARAVKEQKAGKVEFRVEKAGIVHVPFGKASFDPDKLKANFSAIMEVIYKAKPQTAKGVYVKNVTLSTTMGPGIKVDLAEL 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_DESHY (50S ribosomal protein L1 OS=Desulfitobacterium hafniense (strain Y51) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A++E K GK+EYRADK GI+H P GK  FSE+ L  N+   ++++   KP  AKG Y +S  + S+MGP +R+N
Sbjct:  138 PNPKTGTVTFDVAKAVKEIKAGKIEYRADKAGIIHAPIGKVSFSEEQLYQNYKVLVETLVKAKPAAAKGQYIRSVTVSSTMGPGVRIN 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_DESHD (50S ribosomal protein L1 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A++E K GK+EYRADK GI+H P GK  FSE+ L  N+   ++++   KP  AKG Y +S  + S+MGP +R+N
Sbjct:  138 PNPKTGTVTFDVAKAVKEIKAGKIEYRADKAGIIHAPIGKVSFSEEQLYQNYKVLVETLVKAKPAAAKGQYIRSVTVSSTMGPGVRIN 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ANADF (50S ribosomal protein L1 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20
Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPK GTV+ +I +A++E K GKVE+R +K GIVH+PFGKA F  + L  NF A ++ I   KP+ AKGVY K+  + ++MGP I+L++ E+
Sbjct:  138 PNPKVGTVSADIARAVKEQKAGKVEFRVEKAGIVHVPFGKASFEPEKLKANFSAIMEIIYKAKPQTAKGVYVKNVTLSTTMGPGIKLDLSEL 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ANADE (50S ribosomal protein L1 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20
Identity = 46/92 (50.00%), Postives = 66/92 (71.74%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPK GTVT ++ +A++E K GKVE+R +K GIVH+PFGKA F  + L  NF A ++ I   KP+ AKGVY K+  + ++MGP I+L++ E+
Sbjct:  138 PNPKVGTVTMDLARAVKEQKAGKVEFRVEKAGIVHVPFGKASFDPEKLKANFSAIMEVIYKAKPQTAKGVYVKNVTLSTTMGPGIKLDLAEL 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ALKOO (50S ribosomal protein L1 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.202e-20
Identity = 45/94 (47.87%), Postives = 64/94 (68.09%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK+GTVT ++ +A+ E K GKVEYR DKT I+H+P GKA F E  L+ NF   + ++   KP  AKG Y KS  + S+MGP I++N  ++++
Sbjct:  139 PNPKSGTVTFDLTKAVNEIKAGKVEYRLDKTNIIHVPLGKASFEETQLVENFRTLLDAVVKAKPAAAKGQYLKSITVTSTMGPGIKINPLKVME 232          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOBM (50S ribosomal protein L1 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK+ F E+ L  NF   ++++   KP  AKG Y KS  I S+MGP I++N  ++L+
Sbjct:  136 PNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKSSFGEEKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229          
The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_THEP37.045e-2151.1450S ribosomal protein L1 OS=Thermoanaerobacter pse... [more]
RL1_CLOB89.200e-2152.1350S ribosomal protein L1 OS=Clostridium beijerinck... [more]
RL1_ANASK9.200e-2150.0050S ribosomal protein L1 OS=Anaeromyxobacter sp. (... [more]
RL1_ANAD29.200e-2150.0050S ribosomal protein L1 OS=Anaeromyxobacter dehal... [more]
RL1_DESHY1.202e-2048.8650S ribosomal protein L1 OS=Desulfitobacterium haf... [more]
RL1_DESHD1.202e-2048.8650S ribosomal protein L1 OS=Desulfitobacterium haf... [more]
RL1_ANADF1.202e-2050.0050S ribosomal protein L1 OS=Anaeromyxobacter sp. (... [more]
RL1_ANADE1.202e-2050.0050S ribosomal protein L1 OS=Anaeromyxobacter dehal... [more]
RL1_ALKOO1.202e-2047.8750S ribosomal protein L1 OS=Alkaliphilus oremlandi... [more]
RL1_CLOBM2.050e-2048.9450S ribosomal protein L1 OS=Clostridium botulinum ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05138G11SK FerrChloL1 Citrus clementina cDNA clone C05138G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bp
GCGAGGCCTCGTGCCGAATTCGCACGAGGTTCAGTACGGAAAAAAGCCAT
GCGGTATGCATTTTTCCTTTTTTTTTTATTTGCTACAATCTCATCCACAT
TGATAATCTAGATCTCCTCACCTCACCATAATTCGCTCTCCTACAACTTT
TGCCAAGCAGTGGCAAGCCCTGGCATGGGTATCAAAGAGGCTGACTGAAC
AGTTAAAGATATCATTTACAAAATTTAGTTATGTCGTTTAGAAATTTGAT
GGAAGCTTGTAATCGAGCATTTCTTTTATGTTTAATCGAATGGAAGGTCC
CATTGATGAGCAAATGTAAGCACTTTTCCAGTACACTCCTTTGGCCCCTT
TTGGCTTGTTTGCTTCAATTGATTTAATAGCAGCAAGGAAGTTTATGAGG
AGGTCATCTTCAGAAAAATCAGCTTTCCCAAAAGGTATGTGGACAATCCC
AGTTTTATCTGCTCTATATTCAACTTTTCCCTTCTTGAATTCTTCTATGG
CCTGAGGTATGTTAGTTGTAACAGTACCAGCTTTAGGATTTGGCA
back to top