CX296321

Overview
NameCX296321
Unique NameCX296321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOBL (50S ribosomal protein L1 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK+ F E+ L  NF   ++++   KP  AKG Y KS  I S+MGP I++N  ++L+
Sbjct:  136 PNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKSSFGEEKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOBK (50S ribosomal protein L1 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK+ F E+ L  NF   ++++   KP  AKG Y KS  I S+MGP I++N  ++L+
Sbjct:  136 PNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKSSFGEEKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOBJ (50S ribosomal protein L1 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK+ F E+ L  NF   ++++   KP  AKG Y KS  I S+MGP I++N  ++L+
Sbjct:  136 PNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKSSFGEEKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOBH (50S ribosomal protein L1 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK+ F E+ L  NF   ++++   KP  AKG Y KS  I S+MGP I++N  ++L+
Sbjct:  136 PNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKSSFGEEKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOB6 (50S ribosomal protein L1 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GKA F E  L  NF   ++++   KP  AKG Y KS  I S+MGP I++N  ++L+
Sbjct:  136 PNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKASFGEGKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOB1 (50S ribosomal protein L1 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK+ F E+ L  NF   ++++   KP  AKG Y KS  I S+MGP I++N  ++L+
Sbjct:  136 PNPKSGTVTFDVAKAIADIKAGKVEYRVDKTAIIHVPIGKSSFGEEKLSDNFHVLMEAVVKAKPAAAKGQYIKSVAISSTMGPGIKINPGKVLE 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOAB (50S ribosomal protein L1 OS=Clostridium acetobutylicum GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.050e-20
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK+GTVT ++ +A+ E K GKVEYR DKT IVH+P GK+ F  + L  NF A + +I   KP  AKG Y KS  + S+MGP I++N  ++LD
Sbjct:  136 PNPKSGTVTFDVAKALTEIKAGKVEYRVDKTAIVHVPVGKSSFGAEKLKQNFHALMDAIVKAKPASAKGQYVKSVALSSTMGPGIKINPVKVLD 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_AQUAE (50S ribosomal protein L1 OS=Aquifex aeolicus GN=rplA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = -3
Query:  265 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 543
            P+PK GTVTTN+ QAI++ K+G+VE++ DK G VH+P GK  F ++ L+ N  AAI ++   KP GAKG Y K+  +  +M PS++L+I E+L
Sbjct:  142 PSPKTGTVTTNVEQAIKDAKRGRVEFKVDKAGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKGQYIKNMAVSLTMSPSVKLDINEVL 234          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_THETN (50S ribosomal protein L1 OS=Thermoanaerobacter tengcongensis GN=rplA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK+GTVT  + +A++E K GK+EYR DK GI+H+P GK  F ++ LL NF   + +I  +KP  AKG Y KS  + S+MGP +++N
Sbjct:  138 PNPKSGTVTFEVEKAVKEAKAGKIEYRIDKAGIIHVPIGKKSFGKEKLLENFRTVMDAIIKSKPAAAKGQYIKSVVLSSTMGPGVKVN 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOD6 (50S ribosomal protein L1 OS=Clostridium difficile (strain 630) GN=rplA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20
Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK+GTVT ++ +AI+E K GKVEYR DKT I+H+P GK  F  + L  NF A + +I   KP  AKG Y +S  + SSMGP +++N
Sbjct:  139 PNPKSGTVTFDVAKAIDEIKAGKVEYRLDKTNIIHVPVGKVSFGGEKLTENFTALMDAIIKAKPAAAKGQYLRSITVASSMGPGVKIN 226          
The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_CLOBL2.050e-2048.9450S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_CLOBK2.050e-2048.9450S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_CLOBJ2.050e-2048.9450S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_CLOBH2.050e-2048.9450S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_CLOB62.050e-2050.0050S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_CLOB12.050e-2048.9450S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_CLOAB2.050e-2051.0650S ribosomal protein L1 OS=Clostridium acetobutyl... [more]
RL1_AQUAE2.677e-2048.3950S ribosomal protein L1 OS=Aquifex aeolicus GN=rp... [more]
RL1_THETN4.566e-2048.8650S ribosomal protein L1 OS=Thermoanaerobacter ten... [more]
RL1_CLOD64.566e-2051.1450S ribosomal protein L1 OS=Clostridium difficile ... [more]

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Properties
Property NameValue
Genbank descriptionC05138G11SK FerrChloL1 Citrus clementina cDNA clone C05138G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bp
GCGAGGCCTCGTGCCGAATTCGCACGAGGTTCAGTACGGAAAAAAGCCAT
GCGGTATGCATTTTTCCTTTTTTTTTTATTTGCTACAATCTCATCCACAT
TGATAATCTAGATCTCCTCACCTCACCATAATTCGCTCTCCTACAACTTT
TGCCAAGCAGTGGCAAGCCCTGGCATGGGTATCAAAGAGGCTGACTGAAC
AGTTAAAGATATCATTTACAAAATTTAGTTATGTCGTTTAGAAATTTGAT
GGAAGCTTGTAATCGAGCATTTCTTTTATGTTTAATCGAATGGAAGGTCC
CATTGATGAGCAAATGTAAGCACTTTTCCAGTACACTCCTTTGGCCCCTT
TTGGCTTGTTTGCTTCAATTGATTTAATAGCAGCAAGGAAGTTTATGAGG
AGGTCATCTTCAGAAAAATCAGCTTTCCCAAAAGGTATGTGGACAATCCC
AGTTTTATCTGCTCTATATTCAACTTTTCCCTTCTTGAATTCTTCTATGG
CCTGAGGTATGTTAGTTGTAACAGTACCAGCTTTAGGATTTGGCA
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