CX296321

Overview
NameCX296321
Unique NameCX296321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_DEIGD (50S ribosomal protein L1 OS=Deinococcus geothermalis (strain DSM 11300) GN=rplA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.964e-20
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = -3
Query:  277 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 543
            PNPK+GTV  ++   +   K G++E+R DKTG+VH P GKA F   +L  N+ A + ++EA KP  AKGVY +SAY+ S+MGPSI L +
Sbjct:  139 PNPKSGTVGPDVAGMVRGLKAGRIEFRNDKTGVVHAPIGKASFDPSNLSANYRALLSALEAAKPAAAKGVYLRSAYLTSTMGPSIPLTL 227          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ACIBL (50S ribosomal protein L1 OS=Acidobacteria bacterium (strain Ellin345) GN=rplA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.964e-20
Identity = 45/88 (51.14%), Postives = 57/88 (64.77%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVTT++  A+ E K GKVE+R DKTG+VH+P GK  F  D L+ N    I S+   KP  AKG Y K  Y+ S+MGP I ++
Sbjct:  138 PNPKTGTVTTDVASAVREVKAGKVEFRTDKTGLVHVPVGKISFPPDKLVDNATTLITSVVKAKPSAAKGKYIKGCYLSSTMGPGISID 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PETMO (50S ribosomal protein L1 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20
Identity = 43/92 (46.74%), Postives = 63/92 (68.48%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            P+PKAGTVT ++ QA++EFK GKVE R D+TG +HIP GK  F +DDL  N ++A   +   KP+ +KG + + A I S+MGP I +++  +
Sbjct:  139 PSPKAGTVTDDVAQAVKEFKAGKVEVRNDRTGNIHIPIGKVSFDKDDLKENLISAFDQLTKMKPENSKGKFIRKAVIASTMGPGINIDLSSL 230          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOPS (50S ribosomal protein L1 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK+GTVT ++  AI+E K GKVEYR DKT IVH P GK  F  + L+ NF A + ++   KP  AKG Y KS  + ++MGP  ++N  ++LD
Sbjct:  136 PNPKSGTVTFDVANAIKEIKAGKVEYRVDKTAIVHCPIGKKSFGTEKLVENFKALMDALVKAKPAAAKGQYLKSVSVSATMGPGAKVNPAKVLD 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOPE (50S ribosomal protein L1 OS=Clostridium perfringens GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK+GTVT ++  AI+E K GKVEYR DKT IVH P GK  F  + L+ NF A + ++   KP  AKG Y KS  + ++MGP  ++N  ++LD
Sbjct:  136 PNPKSGTVTFDVANAIKEIKAGKVEYRVDKTAIVHCPIGKKSFGTEKLVENFKALMDALVKAKPAAAKGQYLKSVSVSATMGPGAKVNPAKVLD 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOP1 (50S ribosomal protein L1 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19
Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK+GTVT ++  AI+E K GKVEYR DKT IVH P GK  F  + L+ NF A + ++   KP  AKG Y KS  + ++MGP  ++N  ++LD
Sbjct:  136 PNPKSGTVTFDVANAIKEIKAGKVEYRVDKTAIVHCPIGKKSFGTEKLVENFKALMDALVKAKPAAAKGQYLKSVSVSATMGPGAKVNPAKVLD 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SOLUE (50S ribosomal protein L1 OS=Solibacter usitatus (strain Ellin6076) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19
Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +AI E K GKVE+R DKTGI+H P GK  FS D L+ N  + I ++   KP  AKG Y +SA +CS+MGP + ++
Sbjct:  139 PNPKTGTVTVDVAKAIAEIKAGKVEFRVDKTGIIHAPVGKISFSADKLVENASSLIAAVIKAKPAVAKGKYVRSATVCSTMGPGVAID 226          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLONN (50S ribosomal protein L1 OS=Clostridium novyi (strain NT) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = -3
Query:  265 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 543
            PNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK  F E+ L  N+   +++I   KP  AKG Y KS  I S+MGP +++N  ++L
Sbjct:  139 PNPKSGTVTFDVAKAIADIKAGKVEYRLDKTAIIHVPIGKKSFGEEKLAENYNVLMEAIVKAKPAAAKGQYIKSLSISSTMGPGVKINPAKVL 231          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOCE (50S ribosomal protein L1 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPKAGTV+ ++ +AI + K GK+EYR DKT I+H P GKA F  + L+ NF   + +I   KP  AKG Y KS  + S+MGP I++N
Sbjct:  138 PNPKAGTVSMDVAKAIADIKAGKIEYRLDKTNIIHCPIGKASFGNEKLMDNFRTLLGAIIKAKPAAAKGQYLKSVVVTSTMGPGIKIN 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_BACWK (50S ribosomal protein L1 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19
Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPK GTVT ++ +A+ E K GKVEYR DK G +H+P GK  F +  L+ NF     +++  KP  AKG Y K+A + S+MGP +R+++  +
Sbjct:  138 PNPKTGTVTFDVTKAVNEIKAGKVEYRVDKAGNIHVPIGKVSFEDAKLVENFKTIADTLQKAKPAAAKGTYMKNATVASTMGPGVRVDVSTL 229          
The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_DEIGD5.964e-2049.4450S ribosomal protein L1 OS=Deinococcus geothermal... [more]
RL1_ACIBL5.964e-2051.1450S ribosomal protein L1 OS=Acidobacteria bacteriu... [more]
RL1_PETMO7.789e-2046.7450S ribosomal protein L1 OS=Petrotoga mobilis (str... [more]
RL1_CLOPS1.017e-1948.9450S ribosomal protein L1 OS=Clostridium perfringen... [more]
RL1_CLOPE1.017e-1948.9450S ribosomal protein L1 OS=Clostridium perfringen... [more]
RL1_CLOP11.017e-1948.9450S ribosomal protein L1 OS=Clostridium perfringen... [more]
RL1_SOLUE1.329e-1951.1450S ribosomal protein L1 OS=Solibacter usitatus (s... [more]
RL1_CLONN1.329e-1948.3950S ribosomal protein L1 OS=Clostridium novyi (str... [more]
RL1_CLOCE1.329e-1950.0050S ribosomal protein L1 OS=Clostridium cellulolyt... [more]
RL1_BACWK1.329e-1944.5750S ribosomal protein L1 OS=Bacillus weihenstephan... [more]

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Properties
Property NameValue
Genbank descriptionC05138G11SK FerrChloL1 Citrus clementina cDNA clone C05138G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bp
GCGAGGCCTCGTGCCGAATTCGCACGAGGTTCAGTACGGAAAAAAGCCAT
GCGGTATGCATTTTTCCTTTTTTTTTTATTTGCTACAATCTCATCCACAT
TGATAATCTAGATCTCCTCACCTCACCATAATTCGCTCTCCTACAACTTT
TGCCAAGCAGTGGCAAGCCCTGGCATGGGTATCAAAGAGGCTGACTGAAC
AGTTAAAGATATCATTTACAAAATTTAGTTATGTCGTTTAGAAATTTGAT
GGAAGCTTGTAATCGAGCATTTCTTTTATGTTTAATCGAATGGAAGGTCC
CATTGATGAGCAAATGTAAGCACTTTTCCAGTACACTCCTTTGGCCCCTT
TTGGCTTGTTTGCTTCAATTGATTTAATAGCAGCAAGGAAGTTTATGAGG
AGGTCATCTTCAGAAAAATCAGCTTTCCCAAAAGGTATGTGGACAATCCC
AGTTTTATCTGCTCTATATTCAACTTTTCCCTTCTTGAATTCTTCTATGG
CCTGAGGTATGTTAGTTGTAACAGTACCAGCTTTAGGATTTGGCA
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