CX296321
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_DEIGD (50S ribosomal protein L1 OS=Deinococcus geothermalis (strain DSM 11300) GN=rplA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 5.964e-20 Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = -3 Query: 277 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 543 PNPK+GTV ++ + K G++E+R DKTG+VH P GKA F +L N+ A + ++EA KP AKGVY +SAY+ S+MGPSI L + Sbjct: 139 PNPKSGTVGPDVAGMVRGLKAGRIEFRNDKTGVVHAPIGKASFDPSNLSANYRALLSALEAAKPAAAKGVYLRSAYLTSTMGPSIPLTL 227
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ACIBL (50S ribosomal protein L1 OS=Acidobacteria bacterium (strain Ellin345) GN=rplA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 5.964e-20 Identity = 45/88 (51.14%), Postives = 57/88 (64.77%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVTT++ A+ E K GKVE+R DKTG+VH+P GK F D L+ N I S+ KP AKG Y K Y+ S+MGP I ++ Sbjct: 138 PNPKTGTVTTDVASAVREVKAGKVEFRTDKTGLVHVPVGKISFPPDKLVDNATTLITSVVKAKPSAAKGKYIKGCYLSSTMGPGISID 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PETMO (50S ribosomal protein L1 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplA PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 7.789e-20 Identity = 43/92 (46.74%), Postives = 63/92 (68.48%), Query Frame = -3 Query: 268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543 P+PKAGTVT ++ QA++EFK GKVE R D+TG +HIP GK F +DDL N ++A + KP+ +KG + + A I S+MGP I +++ + Sbjct: 139 PSPKAGTVTDDVAQAVKEFKAGKVEVRNDRTGNIHIPIGKVSFDKDDLKENLISAFDQLTKMKPENSKGKFIRKAVIASTMGPGINIDLSSL 230
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOPS (50S ribosomal protein L1 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19 Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPK+GTVT ++ AI+E K GKVEYR DKT IVH P GK F + L+ NF A + ++ KP AKG Y KS + ++MGP ++N ++LD Sbjct: 136 PNPKSGTVTFDVANAIKEIKAGKVEYRVDKTAIVHCPIGKKSFGTEKLVENFKALMDALVKAKPAAAKGQYLKSVSVSATMGPGAKVNPAKVLD 229
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOPE (50S ribosomal protein L1 OS=Clostridium perfringens GN=rplA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19 Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPK+GTVT ++ AI+E K GKVEYR DKT IVH P GK F + L+ NF A + ++ KP AKG Y KS + ++MGP ++N ++LD Sbjct: 136 PNPKSGTVTFDVANAIKEIKAGKVEYRVDKTAIVHCPIGKKSFGTEKLVENFKALMDALVKAKPAAAKGQYLKSVSVSATMGPGAKVNPAKVLD 229
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOP1 (50S ribosomal protein L1 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.017e-19 Identity = 46/94 (48.94%), Postives = 62/94 (65.96%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPK+GTVT ++ AI+E K GKVEYR DKT IVH P GK F + L+ NF A + ++ KP AKG Y KS + ++MGP ++N ++LD Sbjct: 136 PNPKSGTVTFDVANAIKEIKAGKVEYRVDKTAIVHCPIGKKSFGTEKLVENFKALMDALVKAKPAAAKGQYLKSVSVSATMGPGAKVNPAKVLD 229
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SOLUE (50S ribosomal protein L1 OS=Solibacter usitatus (strain Ellin6076) GN=rplA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19 Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVT ++ +AI E K GKVE+R DKTGI+H P GK FS D L+ N + I ++ KP AKG Y +SA +CS+MGP + ++ Sbjct: 139 PNPKTGTVTVDVAKAIAEIKAGKVEFRVDKTGIIHAPVGKISFSADKLVENASSLIAAVIKAKPAVAKGKYVRSATVCSTMGPGVAID 226
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLONN (50S ribosomal protein L1 OS=Clostridium novyi (strain NT) GN=rplA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19 Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = -3 Query: 265 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 543 PNPK+GTVT ++ +AI + K GKVEYR DKT I+H+P GK F E+ L N+ +++I KP AKG Y KS I S+MGP +++N ++L Sbjct: 139 PNPKSGTVTFDVAKAIADIKAGKVEYRLDKTAIIHVPIGKKSFGEEKLAENYNVLMEAIVKAKPAAAKGQYIKSLSISSTMGPGVKINPAKVL 231
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOCE (50S ribosomal protein L1 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rplA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19 Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPKAGTV+ ++ +AI + K GK+EYR DKT I+H P GKA F + L+ NF + +I KP AKG Y KS + S+MGP I++N Sbjct: 138 PNPKAGTVSMDVAKAIADIKAGKIEYRLDKTNIIHCPIGKASFGNEKLMDNFRTLLGAIIKAKPAAAKGQYLKSVVVTSTMGPGIKIN 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_BACWK (50S ribosomal protein L1 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.329e-19 Identity = 41/92 (44.57%), Postives = 60/92 (65.22%), Query Frame = -3 Query: 268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543 PNPK GTVT ++ +A+ E K GKVEYR DK G +H+P GK F + L+ NF +++ KP AKG Y K+A + S+MGP +R+++ + Sbjct: 138 PNPKTGTVTFDVTKAVNEIKAGKVEYRVDKAGNIHVPIGKVSFEDAKLVENFKTIADTLQKAKPAAAKGTYMKNATVASTMGPGVRVDVSTL 229 The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bpback to top |