CX296321

Overview
NameCX296321
Unique NameCX296321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_BREBN (50S ribosomal protein L1 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.735e-19
Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = -3
Query:  274 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 543
            PNPK GTVT ++ +A+ E K GK+EYR DK G +H P GKA F  D L+ N  A  +++   KP  AKGVY ++  + S+MGP +R+ +K
Sbjct:  138 PNPKTGTVTFDVTKAVNEIKAGKIEYRVDKAGNIHAPIGKASFDADKLVENLAALTEALNRAKPAAAKGVYMRNVTLSSTMGPGVRVAVK 227          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_BACSK (50S ribosomal protein L1 OS=Bacillus clausii (strain KSM-K16) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.735e-19
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = -3
Query:  283 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 543
            PNPK GTVT ++ +A+EE K GKVEYR DK+G +H+P GK  F    LL NF   ++++   KP  AKG Y K+  + S+MGP IR+
Sbjct:  138 PNPKTGTVTFDVTKAVEEIKAGKVEYRVDKSGNIHVPIGKVSFDTPKLLENFQTIVETLHKVKPAAAKGTYVKNIAVASTMGPGIRV 224          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOTH (50S ribosomal protein L1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.266e-19
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPKAGTVT ++ +AI + K GK+EYR DKT I+H P GK  F  + L+ NF   + +I   KP  AKG Y KS  + S+MGP I++N
Sbjct:  138 PNPKAGTVTMDVAKAIADIKAGKIEYRLDKTNIIHCPIGKVSFGTEKLVDNFRTLMSAIIKAKPAAAKGQYLKSVVVTSTMGPGIKVN 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_HELMI (50S ribosomal protein L1 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.960e-19
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +AI+E K GK+EYR DKTGI+H P GKA F    LL N+   + ++   KP  AKG Y KS  + S+M P +R+N
Sbjct:  138 PNPKTGTVTFDVARAIQEIKAGKIEYRVDKTGIIHAPIGKASFDVQKLLENYQTLLDTLIKAKPAAAKGQYIKSITLSSTMSPGVRVN 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_FERNB (50S ribosomal protein L1 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.960e-19
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = -3
Query:  256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543
            PNPK GTVT +I  A+ EFKKGKVE R DKTG +H P GKA F  D L  N  +A + I + +P G KG + K A + ++MGP I+L++  + + K
Sbjct:  139 PNPKTGTVTEDIAAAVSEFKKGKVEVRTDKTGNLHFPVGKASFEPDKLKENIKSAYEQILSLRPAGVKGHFIKKAVVATTMGPGIKLDLNVLAEGK 234          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOBB (50S ribosomal protein L1 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.960e-19
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK+GTVT ++ +AI E K GKVEYR DKT IVH P GK  F  + L  NF   ++++   KP  AKG Y KS  + S+MGP  ++N  + LD
Sbjct:  136 PNPKSGTVTFDVAKAIAEIKAGKVEYRVDKTSIVHCPIGKKSFGTEKLKENFTTLMEALVKAKPAAAKGQYLKSITVSSTMGPGAKINPTKALD 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOBA (50S ribosomal protein L1 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.960e-19
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK+GTVT ++ +AI E K GKVEYR DKT IVH P GK  F  + L  NF   ++++   KP  AKG Y KS  + S+MGP  ++N  + LD
Sbjct:  136 PNPKSGTVTFDVAKAIAEIKAGKVEYRVDKTSIVHCPIGKKSFGTEKLKENFTTLMEALVKAKPAAAKGQYLKSITVSSTMGPGAKINPTKALD 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ZYMMO (50S ribosomal protein L1 OS=Zymomonas mobilis GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = -3
Query:  268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543
            PNPK GTVT N+  A++  K G+VEYR D+TGI+H   GKA FS +D+  NF A I ++   KP GAKG Y K   I S+MGP + ++I ++
Sbjct:  138 PNPKLGTVTMNVADAVKAAKGGQVEYRVDRTGIIHSGIGKASFSAEDIRANFDALIDALLKAKPAGAKGRYVKKVAISSTMGPGVSIDIADL 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STACT (50S ribosomal protein L1 OS=Staphylococcus carnosus (strain TM300) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPK GTVT ++ +A+EE K GKVEYRA+K GI+H   GK  FS +DL+ NF      I   KP  AKG Y+KS  + ++MGP ++++
Sbjct:  138 PNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIIHASIGKVSFSTEDLVENFNTLQDVIAKAKPASAKGTYFKSVAVTTTMGPGVKVD 225          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_MOOTA (50S ribosomal protein L1 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = -3
Query:  280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543
            PNPKAGTVT +I +A++E K GK+E+R DKT I+H P GKA F    L  NF A + ++   KP  AKG Y KS  + ++MGP IR+N
Sbjct:  138 PNPKAGTVTMDIARAVKEVKAGKIEFRVDKTAIIHAPIGKASFEASKLKENFQALMDALLRAKPATAKGQYLKSVSLATTMGPGIRVN 225          
The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_BREBN1.735e-1946.6750S ribosomal protein L1 OS=Brevibacillus brevis (... [more]
RL1_BACSK1.735e-1949.4350S ribosomal protein L1 OS=Bacillus clausii (stra... [more]
RL1_CLOTH2.266e-1950.0050S ribosomal protein L1 OS=Clostridium thermocell... [more]
RL1_HELMI2.960e-1950.0050S ribosomal protein L1 OS=Heliobacterium modesti... [more]
RL1_FERNB2.960e-1947.9250S ribosomal protein L1 OS=Fervidobacterium nodos... [more]
RL1_CLOBB2.960e-1948.9450S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_CLOBA2.960e-1948.9450S ribosomal protein L1 OS=Clostridium botulinum ... [more]
RL1_ZYMMO3.865e-1948.9150S ribosomal protein L1 OS=Zymomonas mobilis GN=r... [more]
RL1_STACT3.865e-1948.8650S ribosomal protein L1 OS=Staphylococcus carnosu... [more]
RL1_MOOTA3.865e-1951.1450S ribosomal protein L1 OS=Moorella thermoacetica... [more]

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Properties
Property NameValue
Genbank descriptionC05138G11SK FerrChloL1 Citrus clementina cDNA clone C05138G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bp
GCGAGGCCTCGTGCCGAATTCGCACGAGGTTCAGTACGGAAAAAAGCCAT
GCGGTATGCATTTTTCCTTTTTTTTTTATTTGCTACAATCTCATCCACAT
TGATAATCTAGATCTCCTCACCTCACCATAATTCGCTCTCCTACAACTTT
TGCCAAGCAGTGGCAAGCCCTGGCATGGGTATCAAAGAGGCTGACTGAAC
AGTTAAAGATATCATTTACAAAATTTAGTTATGTCGTTTAGAAATTTGAT
GGAAGCTTGTAATCGAGCATTTCTTTTATGTTTAATCGAATGGAAGGTCC
CATTGATGAGCAAATGTAAGCACTTTTCCAGTACACTCCTTTGGCCCCTT
TTGGCTTGTTTGCTTCAATTGATTTAATAGCAGCAAGGAAGTTTATGAGG
AGGTCATCTTCAGAAAAATCAGCTTTCCCAAAAGGTATGTGGACAATCCC
AGTTTTATCTGCTCTATATTCAACTTTTCCCTTCTTGAATTCTTCTATGG
CCTGAGGTATGTTAGTTGTAACAGTACCAGCTTTAGGATTTGGCA
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