CX296321
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_BREBN (50S ribosomal protein L1 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.735e-19 Identity = 42/90 (46.67%), Postives = 59/90 (65.56%), Query Frame = -3 Query: 274 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIK 543 PNPK GTVT ++ +A+ E K GK+EYR DK G +H P GKA F D L+ N A +++ KP AKGVY ++ + S+MGP +R+ +K Sbjct: 138 PNPKTGTVTFDVTKAVNEIKAGKIEYRVDKAGNIHAPIGKASFDADKLVENLAALTEALNRAKPAAAKGVYMRNVTLSSTMGPGVRVAVK 227
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_BACSK (50S ribosomal protein L1 OS=Bacillus clausii (strain KSM-K16) GN=rplA PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.735e-19 Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = -3 Query: 283 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRL 543 PNPK GTVT ++ +A+EE K GKVEYR DK+G +H+P GK F LL NF ++++ KP AKG Y K+ + S+MGP IR+ Sbjct: 138 PNPKTGTVTFDVTKAVEEIKAGKVEYRVDKSGNIHVPIGKVSFDTPKLLENFQTIVETLHKVKPAAAKGTYVKNIAVASTMGPGIRV 224
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOTH (50S ribosomal protein L1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=rplA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.266e-19 Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPKAGTVT ++ +AI + K GK+EYR DKT I+H P GK F + L+ NF + +I KP AKG Y KS + S+MGP I++N Sbjct: 138 PNPKAGTVTMDVAKAIADIKAGKIEYRLDKTNIIHCPIGKVSFGTEKLVDNFRTLMSAIIKAKPAAAKGQYLKSVVVTSTMGPGIKVN 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_HELMI (50S ribosomal protein L1 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplA PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.960e-19 Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVT ++ +AI+E K GK+EYR DKTGI+H P GKA F LL N+ + ++ KP AKG Y KS + S+M P +R+N Sbjct: 138 PNPKTGTVTFDVARAIQEIKAGKIEYRVDKTGIIHAPIGKASFDVQKLLENYQTLLDTLIKAKPAAAKGQYIKSITLSSTMSPGVRVN 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_FERNB (50S ribosomal protein L1 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplA PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.960e-19 Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = -3 Query: 256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543 PNPK GTVT +I A+ EFKKGKVE R DKTG +H P GKA F D L N +A + I + +P G KG + K A + ++MGP I+L++ + + K Sbjct: 139 PNPKTGTVTEDIAAAVSEFKKGKVEVRTDKTGNLHFPVGKASFEPDKLKENIKSAYEQILSLRPAGVKGHFIKKAVVATTMGPGIKLDLNVLAEGK 234
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOBB (50S ribosomal protein L1 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=rplA PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.960e-19 Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPK+GTVT ++ +AI E K GKVEYR DKT IVH P GK F + L NF ++++ KP AKG Y KS + S+MGP ++N + LD Sbjct: 136 PNPKSGTVTFDVAKAIAEIKAGKVEYRVDKTSIVHCPIGKKSFGTEKLKENFTTLMEALVKAKPAAAKGQYLKSITVSSTMGPGAKINPTKALD 229
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CLOBA (50S ribosomal protein L1 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rplA PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.960e-19 Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPK+GTVT ++ +AI E K GKVEYR DKT IVH P GK F + L NF ++++ KP AKG Y KS + S+MGP ++N + LD Sbjct: 136 PNPKSGTVTFDVAKAIAEIKAGKVEYRVDKTSIVHCPIGKKSFGTEKLKENFTTLMEALVKAKPAAAKGQYLKSITVSSTMGPGAKINPTKALD 229
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_ZYMMO (50S ribosomal protein L1 OS=Zymomonas mobilis GN=rplA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19 Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = -3 Query: 268 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEM 543 PNPK GTVT N+ A++ K G+VEYR D+TGI+H GKA FS +D+ NF A I ++ KP GAKG Y K I S+MGP + ++I ++ Sbjct: 138 PNPKLGTVTMNVADAVKAAKGGQVEYRVDRTGIIHSGIGKASFSAEDIRANFDALIDALLKAKPAGAKGRYVKKVAISSTMGPGVSIDIADL 229
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_STACT (50S ribosomal protein L1 OS=Staphylococcus carnosus (strain TM300) GN=rplA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19 Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPK GTVT ++ +A+EE K GKVEYRA+K GI+H GK FS +DL+ NF I KP AKG Y+KS + ++MGP ++++ Sbjct: 138 PNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIIHASIGKVSFSTEDLVENFNTLQDVIAKAKPASAKGTYFKSVAVTTTMGPGVKVD 225
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_MOOTA (50S ribosomal protein L1 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplA PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19 Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = -3 Query: 280 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLN 543 PNPKAGTVT +I +A++E K GK+E+R DKT I+H P GKA F L NF A + ++ KP AKG Y KS + ++MGP IR+N Sbjct: 138 PNPKAGTVTMDIARAVKEVKAGKIEFRVDKTAIIHAPIGKASFEASKLKENFQALMDALLRAKPATAKGQYLKSVSLATTMGPGIRVN 225 The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bpback to top |