CX296349

Overview
NameCX296349
Unique NameCX296349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: ACDB_BACSU (Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmgC PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.467e-25
Identity = 59/166 (35.54%), Postives = 99/166 (59.64%), Query Frame = 2
Query:  164 QLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 661
            Q+  ++ V  FAR+ IAP A  +++++ FP    L K MG   L GI  P++          + +A+ EISR S +VG+    H+++  N ++  G+  QK KY+P L SG+H+GA A++EP++GSD   ++  A + +G Y++NG+K++ TNG  A   + +A T
Sbjct:    7 QVMMRKMVRDFARKEIAPAAEIMEKTDEFP--FQLIKKMGKHGLMGIPVPEQYGGAGADVVSYILAIHEISRISAAVGVILSVHTSVGTNPILYFGNEEQKMKYIPNLASGDHLGAFALTEPHSGSDAGSLRTTAIKKNGKYLLNGSKIFITNGGAADIYITFALT 170          
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: ACDA_BACSU (Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=acdA PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.267e-25
Identity = 61/163 (37.42%), Postives = 94/163 (57.67%), Query Frame = 2
Query:  176 KESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 664
            ++ V  FA+  +AP AA+ D+   F  D  L++ M N  L GI  P++          + IA+EE+S+   S G++  AH +LC   L   G+  QK +YL +L  GE +GA A++E  +GSD   MK  A+R+   Y++NG+K++ TNG VA   +V+A TD
Sbjct:   13 RKLVRDFAKHEVAPTAAERDEQERF--DRELFREMANLGLTGIPWPEDYGGIGSDYLAYVIAVEELSKVCASTGVTLSAHISLCSWPLFAFGTEEQKTEYLTQLALGEKIGAFALTEAGSGSDAGSMKTTAERIGDDYVLNGSKVFITNGGVADIYIVFAVTD 173          
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: FADE_BACSU (Probable acyl-CoA dehydrogenase OS=Bacillus subtilis GN=fadE PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.678e-21
Identity = 62/173 (35.84%), Postives = 84/173 (48.55%), Query Frame = 2
Query:  152 FDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTD 664
            F D      ++   +  +++ P    I+ ++ F   V L K  G   L G   P+E            +  E+ SRA GS  LSYGAH  +    +V  GS  QK KYLP L SGE + A A++EP +GSD +G K  A   + G  Y++ G K W TN   A   VVYAK D
Sbjct:   30 FTDEHKMIAKTTEDYIEQDVLPHIDDIE-NHQFEHSVRLLKKAGELGLLGADVPEEYGGLGLDKISSALITEKFSRA-GSFSLSYGAHVGIGSLPIVFFGSEEQKKKYLPGLASGEKIAAYALTEPGSGSDALGAKTTAVLNEAGTHYVLTGEKQWITNSAFADVFVVYAKVD 200          
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: ACADS_PONAB (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=ACADS PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.050e-20
Identity = 55/174 (31.61%), Postives = 85/174 (48.85%), Query Frame = 2
Query:  143 SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 664
            S+   +T     ++   FA + + P AA++D+ + FP      K MG   L  +  P+E          + IAMEEISR   S G+    +++L +  +++ GS  QK K++    SG+ +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A TD
Sbjct:   31 SVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFP--AAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQKWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTD 202          
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: ACADS_MOUSE (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acads PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.050e-20
Identity = 53/174 (30.46%), Postives = 87/174 (50.00%), Query Frame = 2
Query:  143 SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 664
            S+   +T    +++   FA + + P AA++D+ + FP      K MG   L  +  P+E          + IA+EEISRA  S G+    +++L +  +++ GS  QK +++    +G+ +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A TD
Sbjct:   31 SVELPETHQMLRQTCRDFAEKELVPIAAQLDREHLFP--TAQVKKMGELGLLAMDVPEELSGAGLGYLAYSIALEEISRACASTGVIMSVNNSLYLGPILKFGSAQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTD 202          
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: ACADS_RAT (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acads PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.208e-20
Identity = 52/174 (29.89%), Postives = 87/174 (50.00%), Query Frame = 2
Query:  143 SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 664
            S+   +T    +++   FA + + P AA++D+ + FP   +  K MG   L  +  P+E          + IA+EEISR   S G+    +++L +  +++ GS  QK +++    +G+ +G  A+SEP  GSD       A      +++NG K W TN   A   VV+A TD
Sbjct:   31 SVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFP--TSQVKKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTD 202          
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: ACADS_BOVIN (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADS PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.208e-20
Identity = 55/175 (31.43%), Postives = 90/175 (51.43%), Query Frame = 2
Query:  143 SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG-GYIINGNKMWCTNGPVAQTLVVYAKTD 664
            S+   +T    +++   FA + + P AA++D+ + FP      K MG   L  +  P+E          + IAMEEISR   S G+    +++L +  +++ G+  QK +++    SG+ +G  A+SEP  GSD  G      R DG  ++++G K W TN   A  +VV+A TD
Sbjct:   31 SVELPETHQMLRQTCRDFAEKELFPIAAQVDKEHRFP--AAQVKKMGELGLMAMNVPEELSGAGLDYLAYSIAMEEISRGCASTGVIMSVNNSLYLGPILKFGTKEQKQQWVAPFTSGDKIGCFALSEPGNGSD-AGAAATTARADGDSWVLSGTKAWITNAWEASAVVVFASTD 202          
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: ACADS_PIG (Short-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Sus scrofa GN=ACADS PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.571e-19
Identity = 54/174 (31.03%), Postives = 86/174 (49.43%), Query Frame = 2
Query:  143 SLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 664
            S+   +T    +++   FA + + P AA++D+ + FP+     K MG   L  +  P+E          + IAMEEISR   S G+    ++ L +  +++ GS  QK +++    SG+ VG  A+SEP  GSD       A      ++++G K W TN   A   VV+A TD
Sbjct:   31 SVELPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQV--KKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNFLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDAGAAATTAQADHDSWVLSGTKAWITNAWEASAAVVFASTD 202          
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: ACADM_DROME (Probable medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG12262 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.051e-19
Identity = 63/180 (35.00%), Postives = 92/180 (51.11%), Query Frame = 2
Query:  134 SSTSLLFDDTQLQFKESVGQFARENIAPRAAKIDQSNSFPQDV--NLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAH-SNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 664
            + TS    + QLQ +E   +F RE I P AA+ D+S  +P  +    W+L G  N H    P +           C++ EE+  A G  G+      S L    ++  G+  QK KYL +L+    V A  ++EP AGSDV G+K +A++    ++ING KMW TNG VA    V A+T+
Sbjct:   31 NGTSFALTEDQLQLQELARKFTREEIIPVAAQYDKSGEYPWPIIKKAWEL-GLMNNH---IPADIGGLDLDVFTTCLSAEEL--AYGCTGIMTALEASGLGQTPVILSGNKEQKKKYLGRLLEEPLVAAYCVTEPGAGSDVSGIKTRAEKKGDEWVINGQKMWITNGGVANWYFVLARTN 204          
BLAST of CX296349 vs. ExPASy Swiss-Prot
Match: ACAD9_HUMAN (Acyl-CoA dehydrogenase family member 9, mitochondrial OS=Homo sapiens GN=ACAD9 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.051e-19
Identity = 65/200 (32.50%), Postives = 98/200 (49.00%), Query Frame = 2
Query:   80 RSLCASFFTKKQKHSAAFSSTSLLFDDTQL--QFKESVGQFARENIAPRAAKIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG--GYIINGNKMWCTNGPVAQTLVVYAKTDI 667
            R+     F  K K    F    +  D+     QF   V +F  E +  R  KIDQ    P D  L KL  +  L G+  P+E          +   + EI    GS+ ++  AH  + +  ++  G+  QK KYLPKL SGEH+ A  ++EP +GSD   ++ +A   +    YI+NG+K+W TNG +A    V+AKT++
Sbjct:   37 RAFAKELFLGKIKKKEVFPFPEVSQDELNEINQFLGPVEKFFTEEVDSR--KIDQEGKIP-DETLEKLK-SLGLFGLQVPEEYGGLGFSNTMYS-RLGEIISMDGSITVTLAAHQAIGLKGIILAGTEEQKAKYLPKLASGEHIAAFCLTEPASGSDAASIRSRATLSEDKKHYILNGSKVWITNGGLANIFTVFAKTEV 231          
The following BLAST results are available for this feature:
BLAST of CX296349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ACDB_BACSU1.467e-2535.54Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=mmg... [more]
ACDA_BACSU4.267e-2537.42Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=acd... [more]
FADE_BACSU1.678e-2135.84Probable acyl-CoA dehydrogenase OS=Bacillus subtil... [more]
ACADS_PONAB7.050e-2031.61Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADS_MOUSE7.050e-2030.46Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADS_RAT9.208e-2029.89Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADS_BOVIN9.208e-2031.43Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADS_PIG1.571e-1931.03Short-chain specific acyl-CoA dehydrogenase, mitoc... [more]
ACADM_DROME2.051e-1935.00Probable medium-chain specific acyl-CoA dehydrogen... [more]
ACAD9_HUMAN2.051e-1932.50Acyl-CoA dehydrogenase family member 9, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionC05139D04SK FerrChloL1 Citrus clementina cDNA clone C05139D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296349 ID=CX296349; Name=CX296349; organism=Citrus clementina; type=EST; length=674bp
GACGAGGCCTCGTGCCGAATTCGGCACGAGGAAAAAGGGAAAAAGGTAAG
AGAGAAGAATGCAGAGGCTCTTGGGTGCACGGTCTCTCTGTGCTTCGTTC
TTTACGAAGAAGCAGAAACATTCGGCTGCTTTCTCCTCCACTTCTCTGCT
CTTTGATGACACTCAATTACAGTTTAAAGAAAGTGTGGGGCAATTTGCGC
GAGAAAACATTGCTCCTCGTGCGGCAAAAATTGACCAATCAAATTCGTTC
CCACAGGATGTTAATTTATGGAAACTCATGGGAAATTTCAATCTCCATGG
AATAACAGCTCCACAGGAATACGGAGGGCTTGGACTTGGTTACTTGTATC
ATTGCATAGCAATGGAAGAAATTAGCCGTGCGTCGGGGTCTGTTGGTCTC
TCTTACGGTGCCCATTCTAATTTGTGCATCAATCAATTGGTGAGACATGG
AAGCCCTGCTCAGAAAGACAAGTACTTGCCCAAGCTCATTAGCGGAGAAC
ATGTAGGTGCTCTTGCCATGAGTGAACCCAACGCTGGCTCTGATGTTGTT
GGCATGAAATGCAAAGCTGATCGCGTAGATGGGGGTTATATTATAAATGG
GAACAAGATGTGGTGCACCAATGGTCCAGTTGCTCAGACGTTGGTTGTTT
ACGCAAAAACAGACATTAAAGCTG
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