CX296421

Overview
NameCX296421
Unique NameCX296421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296421 vs. ExPASy Swiss-Prot
Match: S35E1_DROME (Solute carrier family 35 member E1 homolog OS=Drosophila melanogaster GN=CG14621 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.711e-28
Identity = 71/233 (30.47%), Postives = 121/233 (51.93%), Query Frame = 2
Query:   14 FWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIAQIGPNFVWWVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNTMKRXXXXXXXXXXFHTPVQPVNALGAAIAILGTFIYSQAKQ*T 712
            +++ + P+A+   +  V + +S+ KV VS+ H +K+  P F+V+++R  FGE  P  VY+SLLPII G  +A VTE++F+M+G + A+IS + F  +NIF                  L  +SL I  P  + ++    +A     AI  +    +  + A  +   L N +++  L  ++PLT+++ +  KR             PV  VN +G  +AI+G   Y++AKQ T
Sbjct:   77 YYRLIVPLALGKLLASVTSHISLWKVPVSYAHTVKATMPLFTVVLTRVFFGEKQPTLVYLSLLPIITGVGIATVTEISFDMMGLISALISTMGFSMQNIFSKKVLKDTNIHHLRLLHLLGKLSLFIFLPLWLYMDS---FAVFRHTAIKNLDYRVIALLFADGVLNWLQNIIAFSVLSLVTPLTYAVASASKRIFVIAVSLLILGNPVTWVNCVGMTLAIVGVLCYNRAKQLT 306          
BLAST of CX296421 vs. ExPASy Swiss-Prot
Match: S35E2_MOUSE (Solute carrier family 35 member E2 OS=Mus musculus GN=Slc35e2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.640e-23
Identity = 62/219 (28.31%), Postives = 113/219 (51.60%), Query Frame = 2
Query:   62 VAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIF----XXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIAQIGPNFVWWVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNTMKRXXXXXXXXXXFHTPVQPVNALGAAIAILGTFIYSQAKQ 706
            V   VS+  VAVSF   +KS  P F+V++SR + GE   + V +SL+P++GG AL   TE++FN++GF  A+ +N+    +N+F                  +Y   + ++LLI   +   ++ P +  +G   + +Q   + V  +      +HL +  +Y  + +ISP+TFS+ +T+K           F   +  ++A+G  +  LG  +Y++A+Q
Sbjct:  158 VLGLVSLKNVAVSFAETVKSSAPIFTVIMSRMILGEYTGLLVNLSLIPVMGGLALCTATEISFNILGFSAALSTNIMDCLQNVFSKKLLSGDKYRFSAPELQFYTSAAAVALLI-PAWTFFMDIPVIGRSGKSFSYSQ---DIVLLLLTDGALFHLQSVTAYALMGKISPVTFSVASTVKHALSIWLSIIVFGNKITSLSAIGTILVTLGVLLYNKARQ 372          
BLAST of CX296421 vs. ExPASy Swiss-Prot
Match: S35E1_HUMAN (Solute carrier family 35 member E1 OS=Homo sapiens GN=SLC35E1 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.303e-22
Identity = 68/226 (30.09%), Postives = 106/226 (46.90%), Query Frame = 2
Query:   26 LFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIAQIGPNFVWWVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNTMKRXXXXXXXXXXFHTPVQPVNALGAAIAILGTFIYSQAK 703
            + P+A       V+A VS+ KV VS+ H +K+  P + VL+SR +  E     VY+SL+PII G  LA VTEL+F+M G + A+ + L F  +NIF                  L   ++  + P  + V+      +     + Q  P  +  +A         N +++  L+ +SPL++S+ N  KR             PV   N LG   AILG F+Y++ K
Sbjct:  112 VLPLAFGKYFASVSAHVSIWKVPVSYAHTVKATMPIWVVLLSRIIMKEKQSTKVYLSLIPIISGVLLATVTELSFDMWGLVSALAATLCFSLQNIFSKKVLRDSRIHHLRLLNILGCHAVFFMIPTWVLVDLSAFLVSSDLTYVYQ-WPWTLLLLAVSGFCNFAQNVIAFSILNLVSPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLGMMTAILGVFLYNKTK 336          
BLAST of CX296421 vs. ExPASy Swiss-Prot
Match: S35E1_MOUSE (Solute carrier family 35 member E1 OS=Mus musculus GN=Slc35e1 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.702e-22
Identity = 68/226 (30.09%), Postives = 107/226 (47.35%), Query Frame = 2
Query:   26 LFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIAQIGPNFVWWVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNTMKRXXXXXXXXXXFHTPVQPVNALGAAIAILGTFIYSQAK 703
            + P+A       V+A VS+ KV VS+ H +K+  P + VL+SR +  E     VY+SL+PII G  LA VTEL+F++ G + A+ + L F  +NIF                  L   ++  + P  + V+      +     ++Q  P  +  +A         N +++  L+ ISPL++S+ N  KR             PV   N LG   AILG F+Y++ K
Sbjct:  112 VLPLAFGKYFASVSAHVSIWKVPVSYAHTVKATMPIWVVLLSRIIMKEKQSTKVYLSLVPIISGVLLATVTELSFDVWGLVSALAATLCFSLQNIFSKKVLRDSRIHHLRLLNILGCHAVFFMIPTWVLVDLSTFLVSSDLAYVSQ-WPWTLLLLAVSGFCNFAQNVIAFSILNLISPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLGMMTAILGVFLYNKTK 336          
BLAST of CX296421 vs. ExPASy Swiss-Prot
Match: S35E2_HUMAN (Solute carrier family 35 member E2 OS=Homo sapiens GN=SLC35E2 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 60/219 (27.40%), Postives = 112/219 (51.14%), Query Frame = 2
Query:   62 VAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIF----XXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIAQIGPNFVWWVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNTMKRXXXXXXXXXXFHTPVQPVNALGAAIAILGTFIYSQAKQ 706
            V   VS+  VAVSF   +KS  P F+V++SR + GE   + V +SL+P++GG AL   TE++FN++GF  A+ +N+    +N+F                  +Y   + +++L+        + P +  +G   +  Q   + V  +    + +HL +  +Y  + +ISP+TFS+ +T+K           F   +  ++A+G A+  +G  +Y++A+Q
Sbjct:  158 VLGLVSLKNVAVSFAETVKSSAPIFTVIMSRMILGEYTGLLVNLSLIPVMGGLALCTATEISFNVLGFSAALSTNIMDCLQNVFSKKLLSGDKYRFSAPELQFYTSAAAVAMLV-PARVFFTDVPVIGRSGKSFSYNQ---DVVLLLLTDGVLFHLQSVTAYALMGKISPVTFSVASTVKHALSIWLSVIVFGNKITSLSAVGTALVTVGVLLYNKARQ 372          
BLAST of CX296421 vs. ExPASy Swiss-Prot
Match: S35E1_RAT (Solute carrier family 35 member E1 OS=Rattus norvegicus GN=Slc35e1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.952e-22
Identity = 67/226 (29.65%), Postives = 106/226 (46.90%), Query Frame = 2
Query:   26 LFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIAQIGPNFVWWVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNTMKRXXXXXXXXXXFHTPVQPVNALGAAIAILGTFIYSQAK 703
            + P+A       V+A VS+ KV VS+ H +K+  P + VL+SR +  E     VY+SL+PII G  LA VTEL+F++ G + A+ + L F  +NIF                  L   ++  + P  + V+      +     ++Q  P  +  +          N +++  L+ ISPL++S+ N  KR             PV   N LG   AILG F+Y++ K
Sbjct:  112 VLPLAFGKYFASVSAHVSIWKVPVSYAHTVKATMPIWVVLLSRIIMKEKQSTKVYLSLVPIISGVLLATVTELSFDVWGLVSALAATLCFSLQNIFSKKVLRDSRIHHLRLLNILGCHAVFFMIPTWVLVDLSTFLVSSDLAYVSQ-WPWTLLLLVVSGFCNFAQNVIAFSILNLISPLSYSVANATKRIMVIAVSLIMLRNPVTSTNVLGMMTAILGVFLYNKTK 336          
BLAST of CX296421 vs. ExPASy Swiss-Prot
Match: YG1B_SCHPO (Putative transporter C83.11 OS=Schizosaccharomyces pombe GN=SPBC83.11 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.863e-15
Identity = 54/228 (23.68%), Postives = 104/228 (45.61%), Query Frame = 2
Query:   32 PVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLFGETLPMPVYMSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFXXXXXXXXXXXXXNYYACLSMMSLLILTPFAIAVEGPQMWAAGWQKAIA---QIGPNFVWWVAAQSIFYHLYNQVSYMSLDQISPLTFSIGNTMKRXXXXXXXXXXFHTPVQPVNALGAAIAILGTFIYSQAKQ 706
            P+++    GHV  +++ +K+ VS  H +K+  P F+VL  RF+F        Y SL+P+  G  LA   EL+ +++G + A+IS   FV +NIF             +     + ++LL+ +     +    +W   +Q+  A   ++G      +    + +   N +++  L  ISP+ +SI + +KR          F          G  +  +G ++Y ++K+
Sbjct:   75 PLSIFQIGGHVFGSLATTKIPVSTVHTVKALSPLFTVLAYRFMFRHVYSAMTYFSLVPLTFGVTLACSFELSADIVGLLYALISTCIFVSQNIFGSKIFMEAKSHSTHTKKHYNKLNLLLYSSGVAFIVMIPVWL--YQEGFAYLPEVGSPVFLNLIYNGLSHFFQNILAFTLLSIISPVAYSIASLIKRIFVIVVSIIWFQQATNFTQGSGIFLTAIGLWLYDRSKK 300          
The following BLAST results are available for this feature:
BLAST of CX296421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
S35E1_DROME2.711e-2830.47Solute carrier family 35 member E1 homolog OS=Dros... [more]
S35E2_MOUSE7.640e-2328.31Solute carrier family 35 member E2 OS=Mus musculus... [more]
S35E1_HUMAN1.303e-2230.09Solute carrier family 35 member E1 OS=Homo sapiens... [more]
S35E1_MOUSE1.702e-2230.09Solute carrier family 35 member E1 OS=Mus musculus... [more]
S35E2_HUMAN3.792e-2227.40Solute carrier family 35 member E2 OS=Homo sapiens... [more]
S35E1_RAT4.952e-2229.65Solute carrier family 35 member E1 OS=Rattus norve... [more]
YG1B_SCHPO5.863e-1523.68Putative transporter C83.11 OS=Schizosaccharomyces... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05140F06SK FerrChloL1 Citrus clementina cDNA clone C05140F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296421 ID=CX296421; Name=CX296421; organism=Citrus clementina; type=EST; length=718bp
AGGCGATCTTGAGTTCTGGAAGAGTTTGTTTCCTGTTGCAGTGGCACATA
CAATTGGGCATGTAGCAGCAACCGTAAGTATGTCAAAAGTTGCAGTTTCA
TTCACTCACATCATCAAGAGTGGTGAGCCTGCATTCAGTGTATTGGTTTC
AAGGTTCTTGTTCGGTGAGACACTTCCCATGCCGGTTTATATGTCACTCC
TGCCGATTATTGGAGGCTGTGCCCTTGCTGCTGTTACAGAGCTCAACTTC
AACATGATTGGATTTATGGGAGCTATGATATCGAATTTGGCATTCGTGTT
TCGGAACATTTTCTCCAAGAAAGGGATGAAGGGAAAGTCTGTTGGTGGGA
TGAACTATTATGCTTGTTTGTCTATGATGTCTCTTTTGATTCTCACACCA
TTTGCAATTGCTGTGGAGGGCCCTCAGATGTGGGCTGCTGGCTGGCAAAA
GGCTATTGCTCAAATTGGTCCCAACTTTGTGTGGTGGGTAGCGGCACAGA
GTATCTTCTATCACTTGTACAACCAAGTTTCATACATGTCTCTCGATCAA
ATTTCTCCATTGACATTCAGCATTGGCAACACAATGAAGCGAATCTCTGT
CATAGTCTCCTCCATCATCATCTTCCACACGCCAGTTCAACCCGTCAATG
CTCTTGGAGCCGCCATTGCAATACTCGGCACCTTCATCTATTCACAGGCA
AAGCAGTGAACGTGTGAA
back to top